CmoCh18G013560 (gene) Cucurbita moschata (Rifu)

NameCmoCh18G013560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTranscription factor
LocationCmo_Chr18 : 12775025 .. 12776019 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCCAGCGCCAAACTACACCCACACGACTTTGACTTTGAGTGGCCATATCACCAACATCTTTTCCCCTTCGACCACGAGTAAGAACAAACCATCTAAATTGATAGATACAGTTCAATTTGTTAACACAAGTCTAAAGGATTCAACTTTACGTGTTGGGTTCATTTTAAATTGATTTGTCTTTGATGGGTCTTGCTCAATTTTGGTTTTCTCATTTTCCACAGAGCACTAGAGCTTCCTCCATTAGATGTGGATGCATCCTTCGACTTCAACTCGCTTTCCTTACCATTCCATTGGGACGATATTTCCGAGTTGGAGGCTGAAATTTTGTGGTTGGACAAACACATGATACCAGTTACACCACTTAATGATGAGGACATGTTGGCTGTTGATGAGACGAAGGCGGAGAGAATGGTGAAATTAAAAGACAACGACGGAACGAGTAGGGAGTTGCAGGAGGAGACAAGGGTGATTGAAACAGGGCTTTCAAGTTGTAAAGAAAACGAAGAAGAAGAAGAGTGTGAAAGGAGGATGAGATTAATAATGAGAAACGGGAGGAGAAAGAGTAAAGTGTTGGGATTGGACGAGATTCAAAAGCACTTTGATATCCCAATAACAGAGGCCGCAAAAGCGATGAATGTGGGTTTGACAGTGCTTAAAAGGAGGTGCAGAGAACTTCATATAATGAGATGGCCTCATAGAAAGCTCAAGAGCTTGAACTCTCTCATTACAAATGTCCAGGTTTGTATGTATACACATCCACATTCTATATGTCTATTGATTCAAGTTCTTAGGACGCTCAACGTCGGTGCAATTTGGAAGTGCAGGAGATGGGGTTGACAAATGAGATAAAAGGGTTGGAGGAGCACAAGAGGCTTGTGGAGGAACTCCCAGATACGGACCTCACTCACAGAACCAGAAGGCTCAGGCAAGCCTGTTTCAAAGCCAATTACAAGAAGAAGCGAAGGTCCAATGTTGCCGCTCTTCGCTGA

mRNA sequence

ATGGAGCCCAGCGCCAAACTACACCCACACGACTTTGACTTTGAGTGGCCATATCACCAACATCTTTTCCCCTTCGACCACGAAGCACTAGAGCTTCCTCCATTAGATGTGGATGCATCCTTCGACTTCAACTCGCTTTCCTTACCATTCCATTGGGACGATATTTCCGAGTTGGAGGCTGAAATTTTGTGGTTGGACAAACACATGATACCAGTTACACCACTTAATGATGAGGACATGTTGGCTGTTGATGAGACGAAGGCGGAGAGAATGGTGAAATTAAAAGACAACGACGGAACGAGTAGGGAGTTGCAGGAGGAGACAAGGGTGATTGAAACAGGGCTTTCAAGTTGTAAAGAAAACGAAGAAGAAGAAGAGTGTGAAAGGAGGATGAGATTAATAATGAGAAACGGGAGGAGAAAGAGTAAAGTGTTGGGATTGGACGAGATTCAAAAGCACTTTGATATCCCAATAACAGAGGCCGCAAAAGCGATGAATGTGGGTTTGACAGTGCTTAAAAGGAGGTGCAGAGAACTTCATATAATGAGATGGCCTCATAGAAAGCTCAAGAGCTTGAACTCTCTCATTACAAATGTCCAGGAGATGGGGTTGACAAATGAGATAAAAGGGTTGGAGGAGCACAAGAGGCTTGTGGAGGAACTCCCAGATACGGACCTCACTCACAGAACCAGAAGGCTCAGGCAAGCCTGTTTCAAAGCCAATTACAAGAAGAAGCGAAGGTCCAATGTTGCCGCTCTTCGCTGA

Coding sequence (CDS)

ATGGAGCCCAGCGCCAAACTACACCCACACGACTTTGACTTTGAGTGGCCATATCACCAACATCTTTTCCCCTTCGACCACGAAGCACTAGAGCTTCCTCCATTAGATGTGGATGCATCCTTCGACTTCAACTCGCTTTCCTTACCATTCCATTGGGACGATATTTCCGAGTTGGAGGCTGAAATTTTGTGGTTGGACAAACACATGATACCAGTTACACCACTTAATGATGAGGACATGTTGGCTGTTGATGAGACGAAGGCGGAGAGAATGGTGAAATTAAAAGACAACGACGGAACGAGTAGGGAGTTGCAGGAGGAGACAAGGGTGATTGAAACAGGGCTTTCAAGTTGTAAAGAAAACGAAGAAGAAGAAGAGTGTGAAAGGAGGATGAGATTAATAATGAGAAACGGGAGGAGAAAGAGTAAAGTGTTGGGATTGGACGAGATTCAAAAGCACTTTGATATCCCAATAACAGAGGCCGCAAAAGCGATGAATGTGGGTTTGACAGTGCTTAAAAGGAGGTGCAGAGAACTTCATATAATGAGATGGCCTCATAGAAAGCTCAAGAGCTTGAACTCTCTCATTACAAATGTCCAGGAGATGGGGTTGACAAATGAGATAAAAGGGTTGGAGGAGCACAAGAGGCTTGTGGAGGAACTCCCAGATACGGACCTCACTCACAGAACCAGAAGGCTCAGGCAAGCCTGTTTCAAAGCCAATTACAAGAAGAAGCGAAGGTCCAATGTTGCCGCTCTTCGCTGA
BLAST of CmoCh18G013560 vs. Swiss-Prot
Match: RKD4_ARATH (Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.7e-31
Identity = 63/108 (58.33%), Postives = 87/108 (80.56%), Query Frame = 1

Query: 139 RRKSKVLGLDEIQKHFDIPITEAAKAMNVGLTVLKRRCRELHIMRWPHRKLKSLNSLITN 198
           +++   L + EI++ FD PI +AAK +NVGLTVLK+RCREL I RWPHRKLKSLNSLI N
Sbjct: 142 KKRQDKLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKN 201

Query: 199 VQEMGLTNEIKGLEEHKRLVEELPDTDLTHRTRRLRQACFKANYKKKR 247
           ++ +G+  E+K LEEH+ L+E+ PD +L+  T++LRQACFKANYK+++
Sbjct: 202 LKNVGMEEEVKNLEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRRK 249

BLAST of CmoCh18G013560 vs. Swiss-Prot
Match: RKD2_ARATH (Protein RKD2 OS=Arabidopsis thaliana GN=RKD2 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27
Identity = 86/241 (35.68%), Postives = 129/241 (53.53%), Query Frame = 1

Query: 22  LFPFDHEALELPPLDVDASFDFNSLSLPFHWDDISELEAEILWLDKHMIPVTPLNDEDML 81
           LF ++ + L L       +F F + SLP    D+  L  ++L            N     
Sbjct: 30  LFDWEEDLLALQENSGSQAFPFTTTSLPL--PDLEPLSEDVL------------NSYSSA 89

Query: 82  AVDETKAERMVKLKDNDGTSRELQEETRVIETGLSSCKENEEEEECERRMRLIMRNGRRK 141
           + +ET+  R       DG S E + E   ++      K NE   E   R+   +      
Sbjct: 90  SWNETEQNR------GDGASSEKKRENGTVKETTKKRKINERHREHSVRIISDITTYTTS 149

Query: 142 SK--VLGLDEIQKHFDIPITEAAKAMNVGLTVLKRRCRELHIMRWPHRKLKSLNSLITNV 201
           S    L  + + ++F +PIT+AA A+NVGLT+LKRRCREL I RWPHRKL SLN+LI+NV
Sbjct: 150 SAPTTLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLISNV 209

Query: 202 QEM----------GLTNEIKGLEEHKRLVEELPDTDLTHRTRRLRQACFKANYKKKRRSN 251
           +E+           L + ++ LE+ KR +E+LPD +   +T+RLRQACFKAN+K+K++ +
Sbjct: 210 KELQKMEGEENAEKLQDALEMLEKEKRTIEDLPDLEFKDKTKRLRQACFKANHKRKKKRS 250

BLAST of CmoCh18G013560 vs. Swiss-Prot
Match: RKD1_ARATH (Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-25
Identity = 70/163 (42.94%), Postives = 101/163 (61.96%), Query Frame = 1

Query: 99  GTSRELQEETRVIETGLSSCKENEEEEECERRMRLIMRNGRRKSKVLGLDEIQKHFDIPI 158
           G++    EET  +       K++E     +RR R    +    SK L  + I  +F +PI
Sbjct: 85  GSASWTAEETMFVS---DFAKKSETTTTKKRRCREECFSSCSVSKTLSKETISLYFYMPI 144

Query: 159 TEAAKAMNVGLTVLKRRCRELHIMRWPHRKLKSLNSLITNVQEM----------GLTNEI 218
           T+AA+ +N+GLT+LK+RCREL I RWPHRKL SL  LI+NV+E+           L N +
Sbjct: 145 TQAARELNIGLTLLKKRCRELGIKRWPHRKLMSLQKLISNVKELEKMEGEENEDKLRNAL 204

Query: 219 KGLEEHKRLVEELPDTDLTHRTRRLRQACFKANYKKKRRSNVA 252
           + LE+ K+ +E+LPD     +T+RLRQACFKAN+K+KRRS ++
Sbjct: 205 EKLEKEKKTIEKLPDLKFEDKTKRLRQACFKANHKRKRRSGMS 244

BLAST of CmoCh18G013560 vs. Swiss-Prot
Match: RKD3_ARATH (Protein RKD3 OS=Arabidopsis thaliana GN=RKD3 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 59/136 (43.38%), Postives = 93/136 (68.38%), Query Frame = 1

Query: 125 EECERRMRLIMRNGRRKSKVLG---LDEIQKHFDIPITEAAKAMNVGLTVLKRRCRELHI 184
           +E   + R+IM+   R+  V+     + ++++F +PIT+AAK +N+G+T+LK+RCREL I
Sbjct: 136 KEKTSQKRIIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGI 195

Query: 185 MRWPHRKLKSLNSLITNVQEM-----------GLTNEIKGLEEHKRLVEELPDTDLTHRT 244
            RWPHRKL SLN+LI N++++            L N ++ LE  K+++EE+PD +   +T
Sbjct: 196 PRWPHRKLTSLNALIANLKDLLGNTKGRTPKSKLRNALELLEMEKKMIEEVPDLEFGDKT 255

Query: 245 RRLRQACFKANYKKKR 247
           +RLRQACFKA YK++R
Sbjct: 256 KRLRQACFKAKYKRRR 271

BLAST of CmoCh18G013560 vs. Swiss-Prot
Match: RKD5_ARATH (Protein RKD5 OS=Arabidopsis thaliana GN=RKD5 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.9e-14
Identity = 60/182 (32.97%), Postives = 96/182 (52.75%), Query Frame = 1

Query: 84  DETKAERMVKLKD-NDGTSRELQEETRVIETGLSSCKENE--EEEECERRMRLIMRNGRR 143
           D  K  ++V  +D N     E + E  V E    S  EN+  E+ E + +  ++ +  R 
Sbjct: 175 DLPKPRKLVLKQDLNCLPDSETESEESVNEKTEHSEFENDKTEQSESDAKTEILKKKKRT 234

Query: 144 KSK---VLGLDEIQKHFDIPITEAAKAMNVGLTVLKRRCRELHIMRWPHRKLKSLNSLIT 203
            S+    L L+E+ K+FD+ I EA++ + VGLTVLK++CRE  I RWPHRK+KSL+ LI 
Sbjct: 235 PSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSLDCLIH 294

Query: 204 NVQE-------------MGLTNEIKGLEEHKRLVEELPDTDLTHRTRRLRQACFKANYKK 247
           ++Q              M +  + + LE  KR + + P  ++   T++ RQ  FK  ++ 
Sbjct: 295 DLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQENFKKRHRA 354

BLAST of CmoCh18G013560 vs. TrEMBL
Match: E5GBA6_CUCME (Transcription factor OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-53
Identity = 136/253 (53.75%), Postives = 165/253 (65.22%), Query Frame = 1

Query: 12  FDFEWPYHQHLFPFDHEALELPPLDVDASFDFNSLSL-PFHWDDISELEAEILWLDKHMI 71
           FDFEW  H+ LFP  +E  ELPPLD D   D NS SL PFH                   
Sbjct: 15  FDFEW-LHEDLFPLHNELDELPPLDNDELLDVNSRSLLPFH------------------- 74

Query: 72  PVTPLNDEDMLAVDETKAER---MVKLKDNDGTSRELQEETRVIETGLSSCKENEEEEEC 131
               L+D D+L  D     R   MV+++ N  +S   +EE            E EEEEE 
Sbjct: 75  ----LDDNDVLEFDSEFLSRELEMVEIERNGFSSTWKEEE------------EEEEEEEG 134

Query: 132 ERRMRLIMRNG----RRKSKVLGLDEIQKHFDIPITEAAKAMNVGLTVLKRRCRELHIMR 191
           E+R+RL+  N     R+ S VLGL+EI+K+F IPI++AAK MNVGLTVLKRRCR+L+IMR
Sbjct: 135 EKRLRLMGNNNGNKRRKGSFVLGLEEIRKYFHIPISKAAKEMNVGLTVLKRRCRQLNIMR 194

Query: 192 WPHRKLKSLNSLITNVQEMGLTNEIKGLEEHKRLVEELPDTDLTHRTRRLRQACFKANYK 251
           WPHRK KSLNSLI NV+EMGLTNE+KGLEEHKRL+EE+P+ DLTH  +RLRQACFKANYK
Sbjct: 195 WPHRKHKSLNSLIQNVKEMGLTNEVKGLEEHKRLLEEMPNMDLTHTVKRLRQACFKANYK 231

Query: 252 KKRR---SNVAAL 254
           K RR   +N+A+L
Sbjct: 255 KNRRLRSNNIASL 231

BLAST of CmoCh18G013560 vs. TrEMBL
Match: A0A0A0L6Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239240 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 5.5e-52
Identity = 132/270 (48.89%), Postives = 169/270 (62.59%), Query Frame = 1

Query: 12  FDFEWPYHQHLFPFDHEALELPPLDVDASFDFNSLS--LPFHWDDISELEAEILWLDKHM 71
           FDFEW  H+ LFPF +E  ELPPLD D   D NS    L FH  D + LE E  +L + M
Sbjct: 14  FDFEW-LHEDLFPFHNELDELPPLDKDEFLDVNSSGSLLSFHLVDNNVLEFESEFLSREM 73

Query: 72  IPVTPLN-------------------DEDMLAVDETKAERMVKLKDNDGTSRELQEETRV 131
             +                       +E+    +E + E   + ++ +    E +EE   
Sbjct: 74  DEIERKGLPSSTWKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 133

Query: 132 IETGLSSCKENEEEEECERRMRLIMRNG----RRKSKVLGLDEIQKHFDIPITEAAKAMN 191
            E      +E EEEEE E+R+RL+  N     R++S VLGL+EI+K++ IPI+EAAK MN
Sbjct: 134 EEEEEEEEEEEEEEEEGEKRLRLMRNNNGNKRRKRSFVLGLEEIKKYYHIPISEAAKEMN 193

Query: 192 VGLTVLKRRCRELHIMRWPHRKLKSLNSLITNVQEMGLTNEIKGLEEHKRLVEELPDTDL 251
           VGLTVLKRRCR+L+IMRWPHRKLKS NSLI NV+EMGLTNE+KGLEE KRL+ E P+ DL
Sbjct: 194 VGLTVLKRRCRQLNIMRWPHRKLKSYNSLIQNVKEMGLTNEVKGLEEQKRLLVESPNMDL 253

Query: 252 THRTRRLRQACFKANYKKKRR---SNVAAL 254
           TH T+RLRQACFK  Y+K RR   +N+A+L
Sbjct: 254 THTTKRLRQACFKDKYRKNRRLRSNNIASL 282

BLAST of CmoCh18G013560 vs. TrEMBL
Match: A0A067JSK1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23923 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-40
Identity = 94/142 (66.20%), Postives = 114/142 (80.28%), Query Frame = 1

Query: 106 EETRVIETGLSSCKENEEEEECERRMRLIMRNGRRKSKVLGLDEIQKHFDIPITEAAKAM 165
           + T +++       EN EEE   RR+R    NGR+ S  L ++EI+K+FD+PIT+AAK M
Sbjct: 77  DSTLLLDNPYDRYCENVEEE---RRLR----NGRKMSVPLEMEEIKKYFDLPITKAAKEM 136

Query: 166 NVGLTVLKRRCRELHIMRWPHRKLKSLNSLITNVQEMGLTNEIKGLEEHKRLVEELPDTD 225
           NVGLTVLK+RCREL+IMRWPHRKLKSLNSLI NV+EMGL NEI  LEE KRLVE++PDT+
Sbjct: 137 NVGLTVLKKRCRELNIMRWPHRKLKSLNSLINNVKEMGLNNEIAMLEEDKRLVEDVPDTE 196

Query: 226 LTHRTRRLRQACFKANYKKKRR 248
           LT RT+RLRQACFKANYKKKR+
Sbjct: 197 LTERTKRLRQACFKANYKKKRK 211

BLAST of CmoCh18G013560 vs. TrEMBL
Match: B9IDP6_POPTR (RWP-RK domain-containing family protein OS=Populus trichocarpa GN=POPTR_0015s01410g PE=4 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-39
Identity = 90/134 (67.16%), Postives = 111/134 (82.84%), Query Frame = 1

Query: 116 SSCKENEEEEECERRMRLIMRNGRRKSKVLGLDEIQKHFDIPITEAAKAMNVGLTVLKRR 175
           SS KE EEEEE  R+M     +GR++S  LGL+EIQKHF++PIT+AA+ M VGLTVLK+R
Sbjct: 124 SSVKEEEEEEEESRKM-----SGRKRSVALGLEEIQKHFNMPITQAAREMKVGLTVLKKR 183

Query: 176 CRELHIMRWPHRKLKSLNSLITNVQEMGLTN-EIKGLEEHKRLVEELPDTDLTHRTRRLR 235
           CREL IMRWPHRK+KSLNSLI NV+EMGL+  +   LEEHKRL+E+LPD +LT RT++LR
Sbjct: 184 CRELKIMRWPHRKIKSLNSLINNVKEMGLSEYDTIMLEEHKRLIEKLPDLELTERTKKLR 243

Query: 236 QACFKANYKKKRRS 249
           QACFKANYK++R S
Sbjct: 244 QACFKANYKRRRLS 252

BLAST of CmoCh18G013560 vs. TrEMBL
Match: A0A061G154_THECC (RWP-RK domain-containing protein, putative OS=Theobroma cacao GN=TCM_015430 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 114/248 (45.97%), Postives = 153/248 (61.69%), Query Frame = 1

Query: 13  DFEWPYHQHLFPFDHEALELPPLDVDASFDFN-----SLSLP-----FHWDDISELEAEI 72
           DF+W ++    PF   ALEL P  VD  +DFN     SL+ P       + D  ++  + 
Sbjct: 16  DFDW-FNFEENPFG-TALELLPFVVDGFYDFNDYNFNSLAPPGRINYVEFKDFEDISGDF 75

Query: 73  LWLDKHMIPVTPLNDEDMLAVDETKAERMV-KLKDNDGTSREL---QEETRVIETGLSSC 132
              +       P   ED+L VD    + MV  L    G    +    E   VI++   + 
Sbjct: 76  ALFEN--TSTLPSLHEDIL-VDAKPLKAMVGPLGQYCGNITNIGGSSETLTVIQSDYGAS 135

Query: 133 KENEEEEECERRMRLIMRNGRRKSKVLGLDEIQKHFDIPITEAAKAMNVGLTVLKRRCRE 192
             + E+    RR+     +GR+++  L LDEIQK+FD PI++AAK MNVGLTVLK+RCRE
Sbjct: 136 SGHGEQ----RRI-----SGRKRTAPLELDEIQKYFDFPISKAAKEMNVGLTVLKKRCRE 195

Query: 193 LHIMRWPHRKLKSLNSLITNVQEMGLTNEIKGLEEHKRLVEELPDTDLTHRTRRLRQACF 247
           L+IMRWPHRK+KSL +LI NV+E+GLTNEI  LE+HKRL+E+LPD +LT RT++LRQACF
Sbjct: 196 LNIMRWPHRKIKSLTALINNVKELGLTNEIMMLEDHKRLLEKLPDMELTERTKKLRQACF 249

BLAST of CmoCh18G013560 vs. TAIR10
Match: AT5G53040.1 (AT5G53040.1 RWP-RK domain-containing protein)

HSP 1 Score: 135.6 bits (340), Expect = 4.3e-32
Identity = 63/108 (58.33%), Postives = 87/108 (80.56%), Query Frame = 1

Query: 139 RRKSKVLGLDEIQKHFDIPITEAAKAMNVGLTVLKRRCRELHIMRWPHRKLKSLNSLITN 198
           +++   L + EI++ FD PI +AAK +NVGLTVLK+RCREL I RWPHRKLKSLNSLI N
Sbjct: 142 KKRQDKLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKN 201

Query: 199 VQEMGLTNEIKGLEEHKRLVEELPDTDLTHRTRRLRQACFKANYKKKR 247
           ++ +G+  E+K LEEH+ L+E+ PD +L+  T++LRQACFKANYK+++
Sbjct: 202 LKNVGMEEEVKNLEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRRK 249

BLAST of CmoCh18G013560 vs. TAIR10
Match: AT1G74480.1 (AT1G74480.1 RWP-RK domain-containing protein)

HSP 1 Score: 124.8 bits (312), Expect = 7.7e-29
Identity = 86/241 (35.68%), Postives = 129/241 (53.53%), Query Frame = 1

Query: 22  LFPFDHEALELPPLDVDASFDFNSLSLPFHWDDISELEAEILWLDKHMIPVTPLNDEDML 81
           LF ++ + L L       +F F + SLP    D+  L  ++L            N     
Sbjct: 30  LFDWEEDLLALQENSGSQAFPFTTTSLPL--PDLEPLSEDVL------------NSYSSA 89

Query: 82  AVDETKAERMVKLKDNDGTSRELQEETRVIETGLSSCKENEEEEECERRMRLIMRNGRRK 141
           + +ET+  R       DG S E + E   ++      K NE   E   R+   +      
Sbjct: 90  SWNETEQNR------GDGASSEKKRENGTVKETTKKRKINERHREHSVRIISDITTYTTS 149

Query: 142 SK--VLGLDEIQKHFDIPITEAAKAMNVGLTVLKRRCRELHIMRWPHRKLKSLNSLITNV 201
           S    L  + + ++F +PIT+AA A+NVGLT+LKRRCREL I RWPHRKL SLN+LI+NV
Sbjct: 150 SAPTTLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLISNV 209

Query: 202 QEM----------GLTNEIKGLEEHKRLVEELPDTDLTHRTRRLRQACFKANYKKKRRSN 251
           +E+           L + ++ LE+ KR +E+LPD +   +T+RLRQACFKAN+K+K++ +
Sbjct: 210 KELQKMEGEENAEKLQDALEMLEKEKRTIEDLPDLEFKDKTKRLRQACFKANHKRKKKRS 250

BLAST of CmoCh18G013560 vs. TAIR10
Match: AT1G18790.1 (AT1G18790.1 RWP-RK domain-containing protein)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-26
Identity = 70/163 (42.94%), Postives = 101/163 (61.96%), Query Frame = 1

Query: 99  GTSRELQEETRVIETGLSSCKENEEEEECERRMRLIMRNGRRKSKVLGLDEIQKHFDIPI 158
           G++    EET  +       K++E     +RR R    +    SK L  + I  +F +PI
Sbjct: 85  GSASWTAEETMFVS---DFAKKSETTTTKKRRCREECFSSCSVSKTLSKETISLYFYMPI 144

Query: 159 TEAAKAMNVGLTVLKRRCRELHIMRWPHRKLKSLNSLITNVQEM----------GLTNEI 218
           T+AA+ +N+GLT+LK+RCREL I RWPHRKL SL  LI+NV+E+           L N +
Sbjct: 145 TQAARELNIGLTLLKKRCRELGIKRWPHRKLMSLQKLISNVKELEKMEGEENEDKLRNAL 204

Query: 219 KGLEEHKRLVEELPDTDLTHRTRRLRQACFKANYKKKRRSNVA 252
           + LE+ K+ +E+LPD     +T+RLRQACFKAN+K+KRRS ++
Sbjct: 205 EKLEKEKKTIEKLPDLKFEDKTKRLRQACFKANHKRKRRSGMS 244

BLAST of CmoCh18G013560 vs. TAIR10
Match: AT5G66990.1 (AT5G66990.1 RWP-RK domain-containing protein)

HSP 1 Score: 111.7 bits (278), Expect = 6.7e-25
Identity = 59/136 (43.38%), Postives = 93/136 (68.38%), Query Frame = 1

Query: 125 EECERRMRLIMRNGRRKSKVLG---LDEIQKHFDIPITEAAKAMNVGLTVLKRRCRELHI 184
           +E   + R+IM+   R+  V+     + ++++F +PIT+AAK +N+G+T+LK+RCREL I
Sbjct: 136 KEKTSQKRIIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGI 195

Query: 185 MRWPHRKLKSLNSLITNVQEM-----------GLTNEIKGLEEHKRLVEELPDTDLTHRT 244
            RWPHRKL SLN+LI N++++            L N ++ LE  K+++EE+PD +   +T
Sbjct: 196 PRWPHRKLTSLNALIANLKDLLGNTKGRTPKSKLRNALELLEMEKKMIEEVPDLEFGDKT 255

Query: 245 RRLRQACFKANYKKKR 247
           +RLRQACFKA YK++R
Sbjct: 256 KRLRQACFKAKYKRRR 271

BLAST of CmoCh18G013560 vs. TAIR10
Match: AT4G35590.1 (AT4G35590.1 RWP-RK domain-containing protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-15
Identity = 60/182 (32.97%), Postives = 96/182 (52.75%), Query Frame = 1

Query: 84  DETKAERMVKLKD-NDGTSRELQEETRVIETGLSSCKENE--EEEECERRMRLIMRNGRR 143
           D  K  ++V  +D N     E + E  V E    S  EN+  E+ E + +  ++ +  R 
Sbjct: 175 DLPKPRKLVLKQDLNCLPDSETESEESVNEKTEHSEFENDKTEQSESDAKTEILKKKKRT 234

Query: 144 KSK---VLGLDEIQKHFDIPITEAAKAMNVGLTVLKRRCRELHIMRWPHRKLKSLNSLIT 203
            S+    L L+E+ K+FD+ I EA++ + VGLTVLK++CRE  I RWPHRK+KSL+ LI 
Sbjct: 235 PSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSLDCLIH 294

Query: 204 NVQE-------------MGLTNEIKGLEEHKRLVEELPDTDLTHRTRRLRQACFKANYKK 247
           ++Q              M +  + + LE  KR + + P  ++   T++ RQ  FK  ++ 
Sbjct: 295 DLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQENFKKRHRA 354

BLAST of CmoCh18G013560 vs. NCBI nr
Match: gi|659133656|ref|XP_008466842.1| (PREDICTED: protein RKD4 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 2.5e-53
Identity = 136/253 (53.75%), Postives = 165/253 (65.22%), Query Frame = 1

Query: 12  FDFEWPYHQHLFPFDHEALELPPLDVDASFDFNSLSL-PFHWDDISELEAEILWLDKHMI 71
           FDFEW  H+ LFP  +E  ELPPLD D   D NS SL PFH                   
Sbjct: 15  FDFEW-LHEDLFPLHNELDELPPLDNDELLDVNSRSLLPFH------------------- 74

Query: 72  PVTPLNDEDMLAVDETKAER---MVKLKDNDGTSRELQEETRVIETGLSSCKENEEEEEC 131
               L+D D+L  D     R   MV+++ N  +S   +EE            E EEEEE 
Sbjct: 75  ----LDDNDVLEFDSEFLSRELEMVEIERNGFSSTWKEEE------------EEEEEEEG 134

Query: 132 ERRMRLIMRNG----RRKSKVLGLDEIQKHFDIPITEAAKAMNVGLTVLKRRCRELHIMR 191
           E+R+RL+  N     R+ S VLGL+EI+K+F IPI++AAK MNVGLTVLKRRCR+L+IMR
Sbjct: 135 EKRLRLMGNNNGNKRRKGSFVLGLEEIRKYFHIPISKAAKEMNVGLTVLKRRCRQLNIMR 194

Query: 192 WPHRKLKSLNSLITNVQEMGLTNEIKGLEEHKRLVEELPDTDLTHRTRRLRQACFKANYK 251
           WPHRK KSLNSLI NV+EMGLTNE+KGLEEHKRL+EE+P+ DLTH  +RLRQACFKANYK
Sbjct: 195 WPHRKHKSLNSLIQNVKEMGLTNEVKGLEEHKRLLEEMPNMDLTHTVKRLRQACFKANYK 231

Query: 252 KKRR---SNVAAL 254
           K RR   +N+A+L
Sbjct: 255 KNRRLRSNNIASL 231

BLAST of CmoCh18G013560 vs. NCBI nr
Match: gi|700202527|gb|KGN57660.1| (hypothetical protein Csa_3G239240 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 7.9e-52
Identity = 132/270 (48.89%), Postives = 169/270 (62.59%), Query Frame = 1

Query: 12  FDFEWPYHQHLFPFDHEALELPPLDVDASFDFNSLS--LPFHWDDISELEAEILWLDKHM 71
           FDFEW  H+ LFPF +E  ELPPLD D   D NS    L FH  D + LE E  +L + M
Sbjct: 14  FDFEW-LHEDLFPFHNELDELPPLDKDEFLDVNSSGSLLSFHLVDNNVLEFESEFLSREM 73

Query: 72  IPVTPLN-------------------DEDMLAVDETKAERMVKLKDNDGTSRELQEETRV 131
             +                       +E+    +E + E   + ++ +    E +EE   
Sbjct: 74  DEIERKGLPSSTWKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 133

Query: 132 IETGLSSCKENEEEEECERRMRLIMRNG----RRKSKVLGLDEIQKHFDIPITEAAKAMN 191
            E      +E EEEEE E+R+RL+  N     R++S VLGL+EI+K++ IPI+EAAK MN
Sbjct: 134 EEEEEEEEEEEEEEEEGEKRLRLMRNNNGNKRRKRSFVLGLEEIKKYYHIPISEAAKEMN 193

Query: 192 VGLTVLKRRCRELHIMRWPHRKLKSLNSLITNVQEMGLTNEIKGLEEHKRLVEELPDTDL 251
           VGLTVLKRRCR+L+IMRWPHRKLKS NSLI NV+EMGLTNE+KGLEE KRL+ E P+ DL
Sbjct: 194 VGLTVLKRRCRQLNIMRWPHRKLKSYNSLIQNVKEMGLTNEVKGLEEQKRLLVESPNMDL 253

Query: 252 THRTRRLRQACFKANYKKKRR---SNVAAL 254
           TH T+RLRQACFK  Y+K RR   +N+A+L
Sbjct: 254 THTTKRLRQACFKDKYRKNRRLRSNNIASL 282

BLAST of CmoCh18G013560 vs. NCBI nr
Match: gi|802732773|ref|XP_012086468.1| (PREDICTED: protein RKD4 [Jatropha curcas])

HSP 1 Score: 174.1 bits (440), Expect = 3.1e-40
Identity = 94/142 (66.20%), Postives = 114/142 (80.28%), Query Frame = 1

Query: 106 EETRVIETGLSSCKENEEEEECERRMRLIMRNGRRKSKVLGLDEIQKHFDIPITEAAKAM 165
           + T +++       EN EEE   RR+R    NGR+ S  L ++EI+K+FD+PIT+AAK M
Sbjct: 77  DSTLLLDNPYDRYCENVEEE---RRLR----NGRKMSVPLEMEEIKKYFDLPITKAAKEM 136

Query: 166 NVGLTVLKRRCRELHIMRWPHRKLKSLNSLITNVQEMGLTNEIKGLEEHKRLVEELPDTD 225
           NVGLTVLK+RCREL+IMRWPHRKLKSLNSLI NV+EMGL NEI  LEE KRLVE++PDT+
Sbjct: 137 NVGLTVLKKRCRELNIMRWPHRKLKSLNSLINNVKEMGLNNEIAMLEEDKRLVEDVPDTE 196

Query: 226 LTHRTRRLRQACFKANYKKKRR 248
           LT RT+RLRQACFKANYKKKR+
Sbjct: 197 LTERTKRLRQACFKANYKKKRK 211

BLAST of CmoCh18G013560 vs. NCBI nr
Match: gi|566205376|ref|XP_002321399.2| (RWP-RK domain-containing family protein [Populus trichocarpa])

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-39
Identity = 90/134 (67.16%), Postives = 111/134 (82.84%), Query Frame = 1

Query: 116 SSCKENEEEEECERRMRLIMRNGRRKSKVLGLDEIQKHFDIPITEAAKAMNVGLTVLKRR 175
           SS KE EEEEE  R+M     +GR++S  LGL+EIQKHF++PIT+AA+ M VGLTVLK+R
Sbjct: 124 SSVKEEEEEEEESRKM-----SGRKRSVALGLEEIQKHFNMPITQAAREMKVGLTVLKKR 183

Query: 176 CRELHIMRWPHRKLKSLNSLITNVQEMGLTN-EIKGLEEHKRLVEELPDTDLTHRTRRLR 235
           CREL IMRWPHRK+KSLNSLI NV+EMGL+  +   LEEHKRL+E+LPD +LT RT++LR
Sbjct: 184 CRELKIMRWPHRKIKSLNSLINNVKEMGLSEYDTIMLEEHKRLIEKLPDLELTERTKKLR 243

Query: 236 QACFKANYKKKRRS 249
           QACFKANYK++R S
Sbjct: 244 QACFKANYKRRRLS 252

BLAST of CmoCh18G013560 vs. NCBI nr
Match: gi|694321765|ref|XP_009352035.1| (PREDICTED: protein RKD4-like [Pyrus x bretschneideri])

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-39
Identity = 115/263 (43.73%), Postives = 154/263 (58.56%), Query Frame = 1

Query: 3   PSAKLHPHDFDFEWPYHQHLFPFDHEALELPPLDVDASFDFNSLSLPFHWD--------- 62
           P  +  PH+F+   PY+Q   P   ++  L  L ++    F S  LP  ++         
Sbjct: 12  PKIETDPHEFNSSIPYYQD--PCQDQSAALESLRLENFSQFTSPPLPLQYNPNQLPQMGS 71

Query: 63  -DISELEAEILWLDKHMIPVTPLNDEDMLAVDE----TKAERMVKLKDNDGTSRELQEET 122
            D  +L      LD   +P +P + E    VDE    T AE +V      G S ++    
Sbjct: 72  QDFEDLGIWDYILDDAALP-SPFDYE---VVDENPLTTMAESIVCSNSVSGDSGDV---F 131

Query: 123 RVIETGLSSCKENEEEE-----ECERRMRLIMRNGRRKSKVLGLDEIQKHFDIPITEAAK 182
           R+++ G+ S  + + E       C +RM          +  L LDEIQK+FD+PIT+AAK
Sbjct: 132 RMLDWGMESWGKYDGEGMTKNGSCSKRM---------SAAPLELDEIQKYFDVPITQAAK 191

Query: 183 AMNVGLTVLKRRCRELHIMRWPHRKLKSLNSLITNVQEMGLTNEIKGLEEHKRLVEELPD 242
            + VGLTVLKRRCREL+IMRWPHRKL+SLN+LI NV+ MGLTNE++ LEEHKRL+E+LPD
Sbjct: 192 ELKVGLTVLKRRCRELNIMRWPHRKLRSLNALIENVKGMGLTNELRMLEEHKRLLEQLPD 251

Query: 243 TDLTHRTRRLRQACFKANYKKKR 247
            +L  R +RLRQACFKANYKKKR
Sbjct: 252 MELPERAKRLRQACFKANYKKKR 256

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RKD4_ARATH7.7e-3158.33Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1[more]
RKD2_ARATH1.4e-2735.68Protein RKD2 OS=Arabidopsis thaliana GN=RKD2 PE=2 SV=1[more]
RKD1_ARATH2.2e-2542.94Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1[more]
RKD3_ARATH1.2e-2343.38Protein RKD3 OS=Arabidopsis thaliana GN=RKD3 PE=3 SV=1[more]
RKD5_ARATH2.9e-1432.97Protein RKD5 OS=Arabidopsis thaliana GN=RKD5 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
E5GBA6_CUCME1.7e-5353.75Transcription factor OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0L6Q6_CUCSA5.5e-5248.89Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239240 PE=4 SV=1[more]
A0A067JSK1_JATCU2.2e-4066.20Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23923 PE=4 SV=1[more]
B9IDP6_POPTR1.4e-3967.16RWP-RK domain-containing family protein OS=Populus trichocarpa GN=POPTR_0015s014... [more]
A0A061G154_THECC2.0e-3845.97RWP-RK domain-containing protein, putative OS=Theobroma cacao GN=TCM_015430 PE=4... [more]
Match NameE-valueIdentityDescription
AT5G53040.14.3e-3258.33 RWP-RK domain-containing protein[more]
AT1G74480.17.7e-2935.68 RWP-RK domain-containing protein[more]
AT1G18790.11.2e-2642.94 RWP-RK domain-containing protein[more]
AT5G66990.16.7e-2543.38 RWP-RK domain-containing protein[more]
AT4G35590.11.7e-1532.97 RWP-RK domain-containing protein[more]
Match NameE-valueIdentityDescription
gi|659133656|ref|XP_008466842.1|2.5e-5353.75PREDICTED: protein RKD4 [Cucumis melo][more]
gi|700202527|gb|KGN57660.1|7.9e-5248.89hypothetical protein Csa_3G239240 [Cucumis sativus][more]
gi|802732773|ref|XP_012086468.1|3.1e-4066.20PREDICTED: protein RKD4 [Jatropha curcas][more]
gi|566205376|ref|XP_002321399.2|2.0e-3967.16RWP-RK domain-containing family protein [Populus trichocarpa][more]
gi|694321765|ref|XP_009352035.1|2.0e-3943.73PREDICTED: protein RKD4-like [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003035RWP-RK_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009790 embryo development
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G013560.1CmoCh18G013560.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003035RWP-RK domainPFAMPF02042RWP-RKcoord: 145..192
score: 1.4
IPR003035RWP-RK domainPROFILEPS51519RWP_RKcoord: 130..214
score: 16
NoneNo IPR availableunknownCoilCoilcoord: 253..254
scor
NoneNo IPR availablePANTHERPTHR10270SOX TRANSCRIPTION FACTORcoord: 116..248
score: 1.7
NoneNo IPR availablePANTHERPTHR10270:SF230SUBFAMILY NOT NAMEDcoord: 116..248
score: 1.7

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G013560Cucumber (Chinese Long) v3cmocucB0480
CmoCh18G013560Cucumber (Chinese Long) v3cmocucB0490
CmoCh18G013560Watermelon (97103) v2cmowmbB385
CmoCh18G013560Watermelon (97103) v2cmowmbB404
CmoCh18G013560Wax gourdcmowgoB0499
CmoCh18G013560Wax gourdcmowgoB0504
CmoCh18G013560Cucurbita moschata (Rifu)cmocmoB243
CmoCh18G013560Cucurbita moschata (Rifu)cmocmoB275
CmoCh18G013560Cucurbita moschata (Rifu)cmocmoB274
CmoCh18G013560Cucurbita moschata (Rifu)cmocmoB333
CmoCh18G013560Cucumber (Gy14) v1cgycmoB0008
CmoCh18G013560Cucumber (Gy14) v1cgycmoB0602
CmoCh18G013560Cucurbita maxima (Rimu)cmacmoB292
CmoCh18G013560Cucurbita maxima (Rimu)cmacmoB326
CmoCh18G013560Cucurbita maxima (Rimu)cmacmoB327
CmoCh18G013560Cucurbita maxima (Rimu)cmacmoB591
CmoCh18G013560Wild cucumber (PI 183967)cmocpiB414
CmoCh18G013560Wild cucumber (PI 183967)cmocpiB405
CmoCh18G013560Cucumber (Chinese Long) v2cmocuB401
CmoCh18G013560Cucumber (Chinese Long) v2cmocuB409
CmoCh18G013560Melon (DHL92) v3.5.1cmomeB341
CmoCh18G013560Melon (DHL92) v3.5.1cmomeB369
CmoCh18G013560Watermelon (Charleston Gray)cmowcgB344
CmoCh18G013560Watermelon (Charleston Gray)cmowcgB359
CmoCh18G013560Watermelon (97103) v1cmowmB369
CmoCh18G013560Watermelon (97103) v1cmowmB380
CmoCh18G013560Cucurbita pepo (Zucchini)cmocpeB384
CmoCh18G013560Cucurbita pepo (Zucchini)cmocpeB385
CmoCh18G013560Cucurbita pepo (Zucchini)cmocpeB386
CmoCh18G013560Cucurbita pepo (Zucchini)cmocpeB414
CmoCh18G013560Bottle gourd (USVL1VR-Ls)cmolsiB373
CmoCh18G013560Bottle gourd (USVL1VR-Ls)cmolsiB351
CmoCh18G013560Bottle gourd (USVL1VR-Ls)cmolsiB370
CmoCh18G013560Cucumber (Gy14) v2cgybcmoB326
CmoCh18G013560Cucumber (Gy14) v2cgybcmoB607
CmoCh18G013560Melon (DHL92) v3.6.1cmomedB390
CmoCh18G013560Melon (DHL92) v3.6.1cmomedB422
CmoCh18G013560Silver-seed gourdcarcmoB0693
CmoCh18G013560Silver-seed gourdcarcmoB1327
CmoCh18G013560Silver-seed gourdcarcmoB1328