CmoCh16G008950 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G008950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPutative aminoacrylate peracid reductase RutC
LocationCmo_Chr16 : 5194913 .. 5197262 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCATCCACTCACTCACTGCCAATTAAACTGTAGACGTATGGCTTACTGCACGTCTCACACCTTCCAAATTCCGGCCTCCAACGTCATTTCACGGCCGCGCACTGTCACTCCCTCTGTCGGCGCCGCCGTGTCCTTGTGGCGCCGCCCTTCATCTATTCCATCTATTTCAAACCGCAACATGTCCTTCAAATGCCACGCCATTTCCAAGTGTAATGGTACTACGCTCTCACTTACATCGATATGTTTTTAAAATTTTTCGTTTTTTGAAACGGGATTTTCGATCTTTTGATTAGATTAGAGATATATAATTTTTTTTAATAGTCGAATTATGTTGATATTAACAATTGACATTTTTCAACAATTGTCCTTCCAAGTCTAATTTTGCAATTTGTAGTTTCTAAAAGCTTTGAATCTCATTTCAACACTTAACTACATAAATGCGGACACAATCATTACAATTCCTTAATCAAGTCTAATGTTCAATTTGAGGATAAAAATTGACCCATATAATAAATTTAAAATCTAAGAGTAAAAATTGGTTTTTTCCTCCCAAACATTTTTCTATCACGATATCAATGGTCATCTAACATTTTCTGTGACAGATATCACACCTATTATAACCGAAGAGGCTCCAGAAGCATTAGGGCCATATTCTCAAGGCATCATAGCCAACAACTTTATATTTGTGTCTGGCTCCCTAGGTCTTATTCCCGAGGTAGCTTCATCATTTTATGATTTTATTTATTGTTACGTTCTACTTTACGTGTAGATTATGTGAATTTTTTAAATGTCTAATCCAACATAACTCAAGTGTTTAGGTCTACTTACATGTATTTGTAGATTAGTAGTTTCGAATTTCGTGTATGTGTATGCACTTTCTATGAGGTCTAATTGAGTGTGTATGTTTATGATTTAATACAGACAGGAGAATTAATTTCCGATCACGTTGGAGACCAAACTGTGCAGGTATTATTTGTTTATTTTTTTCATTAGATCTTGTTGTGCTTTGTAGACCCAAAAGTTTTATAAAAATAAATGTTAGAAAATGAAATGAAATATGATTACGCAGGCCCTCAAAAATATAGGAGCAATATTGAAAGCTGGAGGTGCGGACTATAATAGAGTGGTTAAGACAACTATTATGTATGAAACCCTTTTTCGTATATTTTGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTGTCTTGAAACCTACATTTTTACAACAATTCTTTGTTGCAGGCTGGCTGATGTAGCAGACTTTGCATTAGTGAATGAAATTTATGCTCGATGTAAGTTCTTTTCTTTCATTTTTTTGTAATTTTTTTAGTGTAGAAAATGAAACTGAGAGGAGTTCTTGGTCTTTTTTACAGACTTCTCCGAGAAACCTTTTCCAGCTCGGTCAACATTTCAGGTTGGAGCGTTGCCCAAAAATGCCAAGATTGAAATCGATGCAATAGCTTTGGTTTAAACTGTAGTACCTCGACCTGACATGAGCACGGGTTGTGAAGTATCTGATATATTAGTATGGTTTTAAATTTAATAAGTTGGAGATGGCTAAATAGAGGAAGATCCCAAATTAGATGAGGGTTTCTTGCTGGTTGTTACCAACATTATTGTAATAATTTTATTATCTCATGGACATATGCTTTTTAAGCTGTGGAAATAGAGCTAATAAAAGATATTGTTGCCTTGTTTTATGTGGGGGCCTTTCTCATGCTACCATGGTTACTCCTGCAAAATTTCT

mRNA sequence

CTCATCCACTCACTCACTGCCAATTAAACTGTAGACGTATGGCTTACTGCACGTCTCACACCTTCCAAATTCCGGCCTCCAACGTCATTTCACGGCCGCGCACTGTCACTCCCTCTGTCGGCGCCGCCGTGTCCTTGTGGCGCCGCCCTTCATCTATTCCATCTATTTCAAACCGCAACATGTCCTTCAAATGCCACGCCATTTCCAAGTGTAATGATATCACACCTATTATAACCGAAGAGGCTCCAGAAGCATTAGGGCCATATTCTCAAGGCATCATAGCCAACAACTTTATATTTGTGTCTGGCTCCCTAGGTCTTATTCCCGAGACAGGAGAATTAATTTCCGATCACGTTGGAGACCAAACTGTGCAGGCCCTCAAAAATATAGGAGCAATATTGAAAGCTGGAGGTGCGGACTATAATAGAGTGGTTAAGACAACTATTATGCTGGCTGATGTAGCAGACTTTGCATTAGTGAATGAAATTTATGCTCGATACTTCTCCGAGAAACCTTTTCCAGCTCGGTCAACATTTCAGGTTGGAGCGTTGCCCAAAAATGCCAAGATTGAAATCGATGCAATAGCTTTGGTTTAAACTGTAGTACCTCGACCTGACATGAGCACGGGTTGTGAAGTATCTGATATATTAGTATGGTTTTAAATTTAATAAGTTGGAGATGGCTAAATAGAGGAAGATCCCAAATTAGATGAGGGTTTCTTGCTGGTTGTTACCAACATTATTGTAATAATTTTATTATCTCATGGACATATGCTTTTTAAGCTGTGGAAATAGAGCTAATAAAAGATATTGTTGCCTTGTTTTATGTGGGGGCCTTTCTCATGCTACCATGGTTACTCCTGCAAAATTTCT

Coding sequence (CDS)

ATGGCTTACTGCACGTCTCACACCTTCCAAATTCCGGCCTCCAACGTCATTTCACGGCCGCGCACTGTCACTCCCTCTGTCGGCGCCGCCGTGTCCTTGTGGCGCCGCCCTTCATCTATTCCATCTATTTCAAACCGCAACATGTCCTTCAAATGCCACGCCATTTCCAAGTGTAATGATATCACACCTATTATAACCGAAGAGGCTCCAGAAGCATTAGGGCCATATTCTCAAGGCATCATAGCCAACAACTTTATATTTGTGTCTGGCTCCCTAGGTCTTATTCCCGAGACAGGAGAATTAATTTCCGATCACGTTGGAGACCAAACTGTGCAGGCCCTCAAAAATATAGGAGCAATATTGAAAGCTGGAGGTGCGGACTATAATAGAGTGGTTAAGACAACTATTATGCTGGCTGATGTAGCAGACTTTGCATTAGTGAATGAAATTTATGCTCGATACTTCTCCGAGAAACCTTTTCCAGCTCGGTCAACATTTCAGGTTGGAGCGTTGCCCAAAAATGCCAAGATTGAAATCGATGCAATAGCTTTGGTTTAA
Homology
[Close]
BLAST of CmoCh16G008950 vs. Swiss-Prot
Match: RIDA_ARATH (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.8e-41
Identity = 94/155 (60.65%), Postives = 114/155 (73.55%), Query Frame = 1 

Query: 29  AAVSLWRRPSSIPSISNRNMSFKCHAISKCNDITPIITEEAPEALGPYSQGIIANNFIFV 88
           A VSL+R  S  P  ++ ++S    A S   ++  + TE+AP ALGPYSQ I ANN +F+
Sbjct: 38  AGVSLFRMSSRSPPFASLSVS----ASSVKKEV--VSTEKAPAALGPYSQAIKANNLVFL 97

Query: 89  SGSLGLIPETGELISDHVGDQTVQALKNIGAILKAGGADYNRVVKTTIMLADVADFALVN 148
           SG LGLIPETG+ +S+ V DQT Q LKN+G ILKA GADY+ VVKTTIMLAD+ADF  VN
Sbjct: 98  SGVLGLIPETGKFVSESVEDQTEQVLKNMGEILKASGADYSSVVKTTIMLADLADFKTVN 157

Query: 149 EIYARYFSEKPFPARSTFQVGALPKNAKIEIDAIA 184
           EIYA+YF   P PARST+QV ALP NAKIEI+ IA
Sbjct: 158 EIYAKYF-PAPSPARSTYQVAALPLNAKIEIECIA 185

[Close]
BLAST of CmoCh16G008950 vs. Swiss-Prot
Match: YSD2_CAEEL (RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 138.7 bits (348), Expect = 6.6e-32
Identity = 67/121 (55.37%), Postives = 93/121 (76.86%), Query Frame = 1 

Query: 64  IITEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQALKNIGAILKA 123
           I +  AP A+GPYSQ + A N I++SGSLGL P+TG+L  + V +QT Q+LKN+G +LKA
Sbjct: 44  ISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDL-KEGVVEQTHQSLKNLGEVLKA 103

Query: 124 GGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKNAKIEIDAIA 183
            GADY  VVKTT++L ++ADFA VNE+Y +YF + P+PAR+ +QV ALPK   +EI+A+A
Sbjct: 104 AGADYGNVVKTTVLLQNIADFAAVNEVYGQYF-KSPYPARAAYQVAALPKGGLVEIEAVA 162

Query: 184 L 185
           +
Sbjct: 164 I 162

[Close]
BLAST of CmoCh16G008950 vs. Swiss-Prot
Match: UK114_HUMAN (Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.9e-31
Identity = 63/121 (52.07%), Postives = 90/121 (74.38%), Query Frame = 1 

Query: 64  IITEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQALKNIGAILKA 123
           I T +AP A+GPYSQ ++ +  I++SG +G+ P +G+L+S  V ++  QALKN+G ILKA
Sbjct: 9   ISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKA 68

Query: 124 GGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKNAKIEIDAIA 183
            G D+  VVKTT++LAD+ DF  VNEIY +YF    FPAR+ +QV ALPK ++IEI+A+A
Sbjct: 69  AGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSN-FPARAAYQVAALPKGSRIEIEAVA 128

Query: 184 L 185
           +
Sbjct: 129 I 128

[Close]
BLAST of CmoCh16G008950 vs. Swiss-Prot
Match: UK114_BOVIN (Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3)

HSP 1 Score: 132.1 bits (331), Expect = 6.2e-30
Identity = 60/121 (49.59%), Postives = 88/121 (72.73%), Query Frame = 1 

Query: 64  IITEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQALKNIGAILKA 123
           I T +AP A+GPYSQ ++ +  I++SG LG+ P +G+L+   V ++  QAL NIG ILKA
Sbjct: 9   ISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVAEEAKQALTNIGEILKA 68

Query: 124 GGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKNAKIEIDAIA 183
            G D+  VVK T++LAD+ DF+ VN++Y +YF +  FPAR+ +QV ALPK  ++EI+AIA
Sbjct: 69  AGCDFTNVVKATVLLADINDFSTVNDVYKQYF-QSSFPARAAYQVAALPKGGRVEIEAIA 128

Query: 184 L 185
           +
Sbjct: 129 V 128

[Close]
BLAST of CmoCh16G008950 vs. Swiss-Prot
Match: UK114_CAPHI (Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 SV=3)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-29
Identity = 60/121 (49.59%), Postives = 88/121 (72.73%), Query Frame = 1 

Query: 64  IITEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQALKNIGAILKA 123
           I T +AP A+GPYSQ ++ +  I++SG LG+ P +G+L+   V ++  QAL NIG ILKA
Sbjct: 9   ISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALTNIGEILKA 68

Query: 124 GGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKNAKIEIDAIA 183
            G D+  VVK T++LAD+ DF+ VN++Y +YF +  FPAR+ +QV ALPK  ++EI+AIA
Sbjct: 69  AGCDFTNVVKATVLLADINDFSAVNDVYKQYF-QSSFPARAAYQVAALPKGGRVEIEAIA 128

Query: 184 L 185
           +
Sbjct: 129 V 128

[Close]
BLAST of CmoCh16G008950 vs. TrEMBL
Match: A0RZC7_CUCSA (Plastid-lipid associated protein OS=Cucumis sativus GN=CHRD PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 4.3e-70
Identity = 138/187 (73.80%), Postives = 158/187 (84.49%), Query Frame = 1 

Query: 1   MAYCTSHTFQIPASNVISRPRTVTPSVGAAVSLWRRPS-SIPSISNRNMSFKCHAISKCN 60
           MA   +HT QIPAS  I+R R++TPS G AVSLWRRPS +IPSIS+  MSFKCHAISKC 
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60

Query: 61  -DITPIITEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQALKNIG 120
            +I  I T+ APEALGPYSQGIIANN ++VSGSLGLIPETG+LISD VG+QT QALKN+G
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKNAKIE 180
           AIL+AGGADY+RV+KTTIMLA+VADF LVNEIY +YF   P PARSTF  GALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIALV 186
           IDAIA++
Sbjct: 181 IDAIAVL 187

[Close]
BLAST of CmoCh16G008950 vs. TrEMBL
Match: A0A0A0L6A5_CUCSA (Plastid-lipid associated protein OS=Cucumis sativus GN=Csa_3G076580 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-69
Identity = 138/187 (73.80%), Postives = 158/187 (84.49%), Query Frame = 1 

Query: 1   MAYCTSHTFQIPASNVISRPRTVTPSVGAAVSLWRRPS-SIPSISNRNMSFKCHAISKCN 60
           MA   +HT QIPAS  I+R R++TPS   AVSLWRRPS +IPSIS+R MSFKCHAISKC 
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSASTAVSLWRRPSPAIPSISSRQMSFKCHAISKCT 60

Query: 61  -DITPIITEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQALKNIG 120
            +I  I T+ APEALGPYSQGIIANN ++VSGSLGLIPETG+LISD VG+QT QALKN+G
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKNAKIE 180
           AIL+AGGADY+RV+KTTIMLA+VADF LVNEIY +YF   P PARSTF  GALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNCPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIALV 186
           IDAIA++
Sbjct: 181 IDAIAVL 187

[Close]
BLAST of CmoCh16G008950 vs. TrEMBL
Match: W9R0G1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.8e-43
Identity = 107/191 (56.02%), Postives = 130/191 (68.06%), Query Frame = 1 

Query: 1   MAYCTSHTFQIPASNVIS-RPRTVTPSVG------AAVSLWRRPSSIPSISNRNMSFKCH 60
           MA+C + TF +PA+ + + R RT   + G      A  +LWR  SS      R+  F C 
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSSS-----KRSAPFACL 60

Query: 61  AISKCNDITPII-TEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQ 120
            IS  +     + TE+AP ALGPYSQ I ANNF++VSG LGLIPETG+ ISD+V DQT Q
Sbjct: 61  GISTDSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQ 120

Query: 121 ALKNIGAILKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALP 180
            LKN+G ILKAGGA Y+ VVKTTIMLAD+ DF  VNEIYA+YF   P PARST+QV ALP
Sbjct: 121 VLKNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYF-PSPAPARSTYQVAALP 180

Query: 181 KNAKIEIDAIA 184
            +AKIEI+ IA
Sbjct: 181 LDAKIEIECIA 185

[Close]
BLAST of CmoCh16G008950 vs. TrEMBL
Match: C6T4P6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G291100 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-42
Identity = 104/191 (54.45%), Postives = 128/191 (67.02%), Query Frame = 1 

Query: 2   AYCTSHTFQIPA--SNVISRPRTVTPSVG----AAVSLWRRPSSIPSISNRNMSFKCHAI 61
           ++C + +FQIPA   + +    ++   VG    A  S WR  SS      R++ F C +I
Sbjct: 3   SWCGARSFQIPAMEDSALRNRASLAAGVGCLSVAGTSFWRSSSS----PKRSLPFTCLSI 62

Query: 62  SKCNDITPII-TEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQAL 121
           S    I   + TE AP ALGPYSQ I +NN IFVSG LGL+PETG+ +SD V DQT Q L
Sbjct: 63  SSDTRIKESVQTEGAPAALGPYSQAIKSNNLIFVSGVLGLVPETGKFVSDDVEDQTEQLL 122

Query: 122 KNIGAILKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKN 181
           KN+G ILKAGGA Y+ VVKTTIMLAD+ DF  VNEIYA+YF   PFPARST+QV ALP +
Sbjct: 123 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYF-PSPFPARSTYQVAALPLD 182

Query: 182 AKIEIDAIALV 186
           AKIEI+ IA +
Sbjct: 183 AKIEIECIATI 188

[Close]
BLAST of CmoCh16G008950 vs. TrEMBL
Match: I3SSA5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-42
Identity = 107/189 (56.61%), Postives = 125/189 (66.14%), Query Frame = 1 

Query: 2   AYCTSHTFQIPASNVIS-RPRT-----VTPSVGAAVSLWRRPSSIPSISNRNMSFKCHAI 61
           ++C +  F IPA N  + R RT       PS  AA S WR PS     S R   F C +I
Sbjct: 3   SFCAATCFHIPAINGSALRNRTSLAIATRPSSPAAASFWRSPSP----SKRPSPFTCLSI 62

Query: 62  SKCNDITPII-TEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQAL 121
           S    I   + TE AP ALGPYSQ    NN +FVSG LGL+PETG+ ISD+V +QT Q L
Sbjct: 63  SSDARIKEAVHTERAPAALGPYSQANKVNNLLFVSGVLGLVPETGKFISDNVEEQTEQLL 122

Query: 122 KNIGAILKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKN 181
           KN+G ILKAGGA Y+ VVKTTIMLAD+ DF  VNEIYA+YF   PFPARST+QV ALP +
Sbjct: 123 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYF-PSPFPARSTYQVAALPLD 182

Query: 182 AKIEIDAIA 184
           AKIEI+ IA
Sbjct: 183 AKIEIECIA 186

[Close]
BLAST of CmoCh16G008950 vs. TAIR10
Match: AT3G20390.1 (AT3G20390.1 endoribonuclease L-PSP family protein)

HSP 1 Score: 168.3 bits (425), Expect = 4.4e-42
Identity = 94/155 (60.65%), Postives = 114/155 (73.55%), Query Frame = 1 

Query: 29  AAVSLWRRPSSIPSISNRNMSFKCHAISKCNDITPIITEEAPEALGPYSQGIIANNFIFV 88
           A VSL+R  S  P  ++ ++S    A S   ++  + TE+AP ALGPYSQ I ANN +F+
Sbjct: 38  AGVSLFRMSSRSPPFASLSVS----ASSVKKEV--VSTEKAPAALGPYSQAIKANNLVFL 97

Query: 89  SGSLGLIPETGELISDHVGDQTVQALKNIGAILKAGGADYNRVVKTTIMLADVADFALVN 148
           SG LGLIPETG+ +S+ V DQT Q LKN+G ILKA GADY+ VVKTTIMLAD+ADF  VN
Sbjct: 98  SGVLGLIPETGKFVSESVEDQTEQVLKNMGEILKASGADYSSVVKTTIMLADLADFKTVN 157

Query: 149 EIYARYFSEKPFPARSTFQVGALPKNAKIEIDAIA 184
           EIYA+YF   P PARST+QV ALP NAKIEI+ IA
Sbjct: 158 EIYAKYF-PAPSPARSTYQVAALPLNAKIEIECIA 185

[Close]
BLAST of CmoCh16G008950 vs. NCBI nr
Match: gi|525507246|ref|NP_001267661.1| (chordin [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 6.1e-70
Identity = 138/187 (73.80%), Postives = 158/187 (84.49%), Query Frame = 1 

Query: 1   MAYCTSHTFQIPASNVISRPRTVTPSVGAAVSLWRRPS-SIPSISNRNMSFKCHAISKCN 60
           MA   +HT QIPAS  I+R R++TPS G AVSLWRRPS +IPSIS+  MSFKCHAISKC 
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60

Query: 61  -DITPIITEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQALKNIG 120
            +I  I T+ APEALGPYSQGIIANN ++VSGSLGLIPETG+LISD VG+QT QALKN+G
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKNAKIE 180
           AIL+AGGADY+RV+KTTIMLA+VADF LVNEIY +YF   P PARSTF  GALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIALV 186
           IDAIA++
Sbjct: 181 IDAIAVL 187

[Close]
BLAST of CmoCh16G008950 vs. NCBI nr
Match: gi|700200989|gb|KGN56122.1| (Plastid-lipid associated protein [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 1.8e-69
Identity = 138/187 (73.80%), Postives = 158/187 (84.49%), Query Frame = 1 

Query: 1   MAYCTSHTFQIPASNVISRPRTVTPSVGAAVSLWRRPS-SIPSISNRNMSFKCHAISKCN 60
           MA   +HT QIPAS  I+R R++TPS   AVSLWRRPS +IPSIS+R MSFKCHAISKC 
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSASTAVSLWRRPSPAIPSISSRQMSFKCHAISKCT 60

Query: 61  -DITPIITEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQALKNIG 120
            +I  I T+ APEALGPYSQGIIANN ++VSGSLGLIPETG+LISD VG+QT QALKN+G
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKNAKIE 180
           AIL+AGGADY+RV+KTTIMLA+VADF LVNEIY +YF   P PARSTF  GALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNCPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIALV 186
           IDAIA++
Sbjct: 181 IDAIAVL 187

[Close]
BLAST of CmoCh16G008950 vs. NCBI nr
Match: gi|659126881|ref|XP_008463411.1| (PREDICTED: ribonuclease UK114-like [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 1.5e-68
Identity = 139/187 (74.33%), Postives = 157/187 (83.96%), Query Frame = 1 

Query: 1   MAYCTSHTFQIPASNVISRPRTVTPSVGAAVSLWRRP-SSIPSISNRNMSFKCHAISKCN 60
           MA   +HT QIPAS  I+R R+ TPS G AVSLWRRP  +IPSIS+R MSFKC AISKC 
Sbjct: 1   MAMSAAHTLQIPASTAITRGRSFTPSAGTAVSLWRRPLPAIPSISSRQMSFKCLAISKCT 60

Query: 61  -DITPIITEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQALKNIG 120
            +I  I T+ APEALGPYSQGIIANN ++VSGSLGLIP+TGELISD VG+QT QALKN+G
Sbjct: 61  TEIKGIATDNAPEALGPYSQGIIANNILYVSGSLGLIPKTGELISDDVGEQTEQALKNVG 120

Query: 121 AILKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPKNAKIE 180
           AIL+AGGADY+RVVKTTIMLA+VADF LVNEIYA+YF   P PARSTF  GALPKNAKIE
Sbjct: 121 AILRAGGADYDRVVKTTIMLANVADFTLVNEIYAKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIALV 186
           IDAIA++
Sbjct: 181 IDAIAVL 187

[Close]
BLAST of CmoCh16G008950 vs. NCBI nr
Match: gi|703083218|ref|XP_010092158.1| (hypothetical protein L484_017847 [Morus notabilis])

HSP 1 Score: 182.2 bits (461), Expect = 8.4e-43
Identity = 107/191 (56.02%), Postives = 130/191 (68.06%), Query Frame = 1 

Query: 1   MAYCTSHTFQIPASNVIS-RPRTVTPSVG------AAVSLWRRPSSIPSISNRNMSFKCH 60
           MA+C + TF +PA+ + + R RT   + G      A  +LWR  SS      R+  F C 
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSSS-----KRSAPFACL 60

Query: 61  AISKCNDITPII-TEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQ 120
            IS  +     + TE+AP ALGPYSQ I ANNF++VSG LGLIPETG+ ISD+V DQT Q
Sbjct: 61  GISTDSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQ 120

Query: 121 ALKNIGAILKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALP 180
            LKN+G ILKAGGA Y+ VVKTTIMLAD+ DF  VNEIYA+YF   P PARST+QV ALP
Sbjct: 121 VLKNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYF-PSPAPARSTYQVAALP 180

Query: 181 KNAKIEIDAIA 184
            +AKIEI+ IA
Sbjct: 181 LDAKIEIECIA 185

[Close]
BLAST of CmoCh16G008950 vs. NCBI nr
Match: gi|1009110922|ref|XP_015898337.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 182.2 bits (461), Expect = 8.4e-43
Identity = 104/190 (54.74%), Postives = 129/190 (67.89%), Query Frame = 1 

Query: 1   MAYCTSHTFQIPASNVISRPRTVTPSVG------AAVSLWRRPSSIPSISNRNMSFKCHA 60
           MA+C + TF +PA +V +       +VG      A  ++WR  SS+     R+  F C  
Sbjct: 1   MAWCAARTFNVPAIDVGALRTRAPLAVGVGFASVAGSNIWRSSSSM----KRSAPFACLG 60

Query: 61  ISKCNDITPII-TEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTVQA 120
           IS    I   + T++AP ALGPYSQ I ANNF++VSG LGLIPETG+ +SD+V DQT Q 
Sbjct: 61  ISTDTRIKEAVKTDKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFVSDNVEDQTEQV 120

Query: 121 LKNIGAILKAGGADYNRVVKTTIMLADVADFALVNEIYARYFSEKPFPARSTFQVGALPK 180
           LKN+G ILKAGGA Y+ VVKTTIMLAD+ DF  VNEIYA+YF   P PARST+QV ALP 
Sbjct: 121 LKNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYAKYF-PSPAPARSTYQVAALPL 180

Query: 181 NAKIEIDAIA 184
           +AKIEI+ IA
Sbjct: 181 DAKIEIECIA 185

The following BLAST results are available for this feature:
BLAST of CmoCh16G008950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RIDA_ARATH7.8e-4160.65Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA... [more]
YSD2_CAEEL6.6e-3255.37RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3[more]
UK114_HUMAN1.9e-3152.07Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1[more]
UK114_BOVIN6.2e-3049.59Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3[more]
UK114_CAPHI1.4e-2949.59Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 SV=3[more]
BLAST of CmoCh16G008950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0RZC7_CUCSA4.3e-7073.80Plastid-lipid associated protein OS=Cucumis sativus GN=CHRD PE=2 SV=1[more]
A0A0A0L6A5_CUCSA1.2e-6973.80Plastid-lipid associated protein OS=Cucumis sativus GN=Csa_3G076580 PE=4 SV=1[more]
W9R0G1_9ROSA5.8e-4356.02Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1[more]
C6T4P6_SOYBN1.7e-4254.45Uncharacterized protein OS=Glycine max GN=GLYMA_02G291100 PE=2 SV=1[more]
I3SSA5_LOTJA2.9e-4256.61Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of CmoCh16G008950 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G20390.14.4e-4260.65 endoribonuclease L-PSP family protein[more]
BLAST of CmoCh16G008950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|525507246|ref|NP_001267661.1|6.1e-7073.80chordin [Cucumis sativus][more]
gi|700200989|gb|KGN56122.1|1.8e-6973.80Plastid-lipid associated protein [Cucumis sativus][more]
gi|659126881|ref|XP_008463411.1|1.5e-6874.33PREDICTED: ribonuclease UK114-like [Cucumis melo][more]
gi|703083218|ref|XP_010092158.1|8.4e-4356.02hypothetical protein L484_017847 [Morus notabilis][more]
gi|1009110922|ref|XP_015898337.1|8.4e-4354.74PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006056RidA
IPR006175YjgF/YER057c/UK114
IPR013813Endoribonuclease L-PSP/chorismate mutase-like
IPR019897RidA_CS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0009082 branched-chain amino acid biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009579 thylakoid
cellular_component GO:0005773 vacuole
molecular_function GO:0019239 deaminase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G008950.1CmoCh16G008950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006056RidA familyTIGRFAMsTIGR00004TIGR00004coord: 63..184
score: 1.1
IPR006175YjgF/YER057c/UK114 familyPANTHERPTHR11803TRANSLATION INITIATION INHIBITORcoord: 61..185
score: 2.7
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 67..184
score: 2.3
IPR013813Endoribonuclease L-PSP/chorismate mutase-likeGENE3DG3DSA:3.30.1330.40coord: 63..184
score: 6.9
IPR013813Endoribonuclease L-PSP/chorismate mutase-likeunknownSSF55298YjgF-likecoord: 62..185
score: 2.36
IPR019897RidA, conserved sitePROSITEPS01094UPF0076coord: 161..179
scor
NoneNo IPR availablePANTHERPTHR11803:SF13RIBONUCLEASE UK114coord: 61..185
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G008950Cucsa.060000Cucumber (Gy14) v1cgycmoB0075
CmoCh16G008950CmaCh16G008660Cucurbita maxima (Rimu)cmacmoB324
CmoCh16G008950CmaCh04G009580Cucurbita maxima (Rimu)cmacmoB704
CmoCh16G008950Cla005315Watermelon (97103) v1cmowmB289
CmoCh16G008950Csa3G076580Cucumber (Chinese Long) v2cmocuB309
CmoCh16G008950MELO3C025369Melon (DHL92) v3.5.1cmomeB283
CmoCh16G008950ClCG10G005350Watermelon (Charleston Gray)cmowcgB274
CmoCh16G008950CSPI03G05070Wild cucumber (PI 183967)cmocpiB317
CmoCh16G008950Lsi05G005890Bottle gourd (USVL1VR-Ls)cmolsiB301
CmoCh16G008950Cp4.1LG14g07300Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G008950Cp4.1LG01g08100Cucurbita pepo (Zucchini)cmocpeB317
CmoCh16G008950MELO3C025369.2Melon (DHL92) v3.6.1cmomedB322
CmoCh16G008950CsaV3_3G005070Cucumber (Chinese Long) v3cmocucB0372
CmoCh16G008950Cla97C10G189600Watermelon (97103) v2cmowmbB317
CmoCh16G008950Bhi11G000476Wax gourdcmowgoB0406
CmoCh16G008950CsGy3G005140Cucumber (Gy14) v2cgybcmoB303
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G008950CmoCh04G010310Cucurbita moschata (Rifu)cmocmoB290
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G008950Silver-seed gourdcarcmoB0920
CmoCh16G008950Silver-seed gourdcarcmoB0921
CmoCh16G008950Cucurbita moschata (Rifu)cmocmoB285
CmoCh16G008950Cucurbita maxima (Rimu)cmacmoB700
CmoCh16G008950Melon (DHL92) v3.5.1cmomeB293
CmoCh16G008950Cucurbita pepo (Zucchini)cmocpeB312