CmoCh04G010310 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G010310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Putative aminoacrylate peracid reductase RutC
Location	Cmo_Chr04 : 5159300 .. 5163562 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTTTATTAATTTAGCCTATTTAATTCAACAGACATAATAGTGACAAAACCAATGGACTAAAATGACTAATTTTGAACCAATTTAAAAGGGATGAGAACTAATTTTTAATATTTTACTTTGCATTATGTTTATACCATTTATTTATGTTGGATTGTTAAATGATGTATTTGTTTGTACTCACATTTTGCATTAAGTAGTGAGTTAATTAAATTTTAAATTAATTTCTTAATATAGATTAAGCTTCGTGTATATCATAATATAATTCAAATATTTTGAGTATGGTAAAAAAATTATTTCCGTATTTTTAAACTTTATCCAATATATTTGATAATTCTAGATTTTGCTTGGAATAAACTTTTTAAGTAATTCTAATTTTTATTATTCTATTTGGATATCTTTTACCTTATATGCTCTTTTTTTGGTTATACTTTAGAAGGGTAATTCAAAGATGCGACTATTTTTATTCGTTTTATTTAAAAGTGAAATTAAATAAAATTAACCACTGAATATTAAAACAATATATCTAAGATACTTACCGTGGTAAAAACATTTATTTAATTTTTTACGTGTAAGGCTGTCTAACTTATTAAAGAAAATAGAGAAAGAATAAATAATAATAATAATAATAATTTAATTAATTTGACATTTAAATATTTTAAAATAGAGAAATATAAATTAAATCGTTGATACACTTGAGAAATTTAATTAATATAACTATAAAGTTTTTATAGACATGAAATAATGCTTATTGTCTCTGTCGCTGCGAGAAGCCCACTAAACTGCATAATTATGATTCGCACACTACTGCATTGGCTTTACTCGATATAATTCGCCCGTGGGTTTCAGTCGTTCAACTAATTGGCACGCAATAACCTGCTCGAACAGTCTATCAACAGTCAATTGGTATAGGGTCAAACGGAATACAACAGAGGGTGCAAATTGATACACTTATATATTATAAAAAGTCCAATGCTCGAATTGATACAATTTAAGCTTAGGGTATATGTCGATTTTTTTGCCTCGTCCAAAATATTGGATTGTACTCCAAACCGAAAAAAAAAAAAAAAAAAATTTGTCCCATAATTTATTTATACATTTTTTATTTTTTATATTTACAATTTTATTGTTTTACTTAAACAACAATATTTAAATACACTAAACTTTTATTCAATTTTTTTTCTTAAAATAATTTAAAAATATTTATAAAAATTGAAATGGGGGCAGAAATTGTAGATGCTAAAATTGGATGCTTTGGCATTAGGTATTTATTTATTACGTACTGAAAAGGAGACGTTTTTTTGTGCATTGCAAAGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGGTGCTCAGTGCGAAGAGTGAGGAGGAAAGCAGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTACGCCCTCGTTTTTCTGCTTATTTCCGATCGATTCCTCTTTTTTCGTCGATCAATTTTCGCTATGGATTAGTGATTGCGGTTTTGTGTTGTACTTGACTCTTGTTTTGTCGAAACCTCGATGGATTTTGTAGGGTTTAGTTTGTGTTTCAGCTCAGTAGCTATTAGAACTTTGAAATCTGAGCGTTCTTTGCGATTAGGTATAAGCTTGGTGATTATTCTATTCACAGCGTTAACTTAGATTGGAGGATCTTTTTGGTATCCCCGCTTATGTAGAAGGGTCTCCTTGTCCCTTGGTCCGCTAGGCTGTTTTGGTCGCTTAGGCGTATTTATTCAATGAACGTGTTGAATTCTTTCCTATACATATACATATAAAGTAATGCGGAAGATAATTCTTTGGAGGCTTTCTTTTTCATAGCTGTAGATGAAAATTCTAACTTTCGGGAAGAATCAAATAATTTTTCTTTTCTAATTTTCTTTTTTATGAATGCTTATAACAGATGCATAACCACCCCTTACTAATTATTTCTTGTGTGGCAGGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGGTAGCTTCATCACTTTATTATTGTTATTTTCTATTTGATAGTGTTTATGATTTGATTAAAGGAATGTTTGGGAGTGGTTTCTCTTATATCATGCCGTTTTGAGTGGTACAAGATGATTTTGGCTATTCCAAAATCACTCCAATTCATTCCCTAAGTGGGTTTTTGGATGCCGACTTGGGCATAGCTTGGAAGGTTGAATATTTTAAAATATTGGTATGAAAAAAAAAGAAAAAAAAAAAAATACAGAAGGATGGAGTGGGTTTCAGTGTGTGCGCATGTTCGTATTATTGTGCTGCCTAATAGGGTGTTTATCTTCATGTTCCAATACAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTAATGTTCATTTAGTAGGGTAGTTGATCGTATCATGTCCATGTAAATTAAACTTTTGAGCTGGATATAAAAAATTATAAGTCAATGGAATTTGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTACGAACTTTTGGCCTCTTTTCTTTCTGATCATAATATCTTCTCTCTTTAATTTAAATAAGATCTGAATAACTAAGGAGTTGATGGTAATTGTTTTAAAACATGGTTTTCTGCTTTTGTATACTTTTAAGAACAATTTTTTGAGTGACTTATTAAAGTTAAGATAATTGTCCACAACAAACACTATTTACTAGTTATTCTGCTTGGTTCTATTTTCCATTTTTATGTTTATTCTATTTATCTAACCTTATGCTTTAACCCCGTACACTTTGTACTAAAAATCATTTGTCTGTTTCATTAGTTTTGCATAATTCATTTCAGAAACTTGACAAAGTATACCTTTTGCTAATTTACTTGATGAGTAGATTCACGAAAGTATTTAAAGCTAGATCAAGATGTAAGTCATTCTTTGAGTTCAAAAATTGATAAGGCTTTCGTTAAATAAATTGTTATAATTAAATTTATAACAATTTAATCCTACCATGAAAAATCTCATAAAAACTAAGTGCCAGTTTTTATATGTAATGATTTAGACTTTCTAACTTATAAACACATTTGGTCTCTTTTTAGTTTTTTAATTTATATATGTAAGAAATTCCATTCCATCCTTATAGTATTTTCCACAGTAAGAGACTAAATGGTCTCTTGAAAAACTTGACTAAACTATTCTAAGTTTTCAAGTATAGGGACTAATGGTTACATATATAAGTTGAGAGATTGAATTGTTTGAAACTAAACTGTTACAAACTAAAACATAGAGACTAAATTGTTACTTTTATTGAAGTTCAAGGACCAAAAGTGTTTTTAACATCCACTTAGTAATCTTTCTAGTATTGAAAAGTGTCTTTCAGAACATTCTCATGTTTTTCCTGTGATTCAGTTCTTTCTTCGCAAATCTTTCCTGCAGGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATGTAAGTTTCGTTAAACTGAACCTTTAACCTCTGTCTTATCTAATACCGAGCATTTAATTTAGATATGCCTTTATGATCACTCTCTGTCCCCATTACGGTTCAACTTTAGTTTCTAGAATATAGTTATTTAAGTGAGTTCGAAAAATTACAACTTGGATTAATTTTGTATATTATTCTACTTGGTGAAAATGATAAACTTTTCTTTTTCGTGTTCTATCTGGCTGTGTACTACTTGGTGGTCTGGTTATTTTGGGTCCATGTTTCATTTACTGAAGGATAATTTATGTCCTGGTGAAGTTGTGATTCTATCTACGCTGCTTTGATATATTCTCTTGAGATAAGGTTGCATTCTTCATTTTTACAGATTCAAAGCTCAAGTTGAGAGTGTTTTCACATTGTTTTGTTTGCCACTTTTTATGCAGACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

mRNA sequence

ATGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGGTGCTCAGTGCGAAGAGTGAGGAGGAAAGCAGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

Coding sequence (CDS)

ATGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGGTGCTCAGTGCGAAGAGTGAGGAGGAAAGCAGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

Homology

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BLAST of CmoCh04G010310 vs. Swiss-Prot
Match: RIDA_ARATH (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.8e-66
Identity = 139/190 (73.16%), Postives = 157/190 (82.63%), Query Frame = 1


Query: 30  MAWCAARALHMPALDI-TALRS-KTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSI 89
           M W   R+++ P LD+ TALRS +TPL A GVGCA+ AG +L R SS   R  PFASLS+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSS---RSPPFASLSV 60

Query: 90  STDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 149
           S  +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ +E QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 150 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 209
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY KYFP+P+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 210 KVEIECIATL 217
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

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BLAST of CmoCh04G010310 vs. Swiss-Prot
Match: UK114_HUMAN (Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.5e-32
Identity = 63/123 (51.22%), Postives = 91/123 (73.98%), Query Frame = 1


Query: 92  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 151
           I+  + T KAP A+GPYSQA+  +  +++SG +G++P +G+ VS  +  + +Q LKNMGE
Sbjct: 5   IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGE 64

Query: 152 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 211
           ILKA G  +++VVKTT++LAD+ DF  VNEIY +YF S  PAR+ YQVAALP  +++EIE
Sbjct: 65  ILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIE 124

Query: 212 CIA 215
            +A
Sbjct: 125 AVA 127

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BLAST of CmoCh04G010310 vs. Swiss-Prot
Match: YSD2_CAEEL (RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 5.9e-32
Identity = 66/122 (54.10%), Postives = 90/122 (73.77%), Query Frame = 1


Query: 93  KEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEI 152
           ++ + +  AP A+GPYSQA++A N +++SG LGL+P+TG      +E QT Q LKN+GE+
Sbjct: 41  RQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVE-QTHQSLKNLGEV 100

Query: 153 LKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIEC 212
           LKA GA Y +VVKTT++L ++ DF  VNE+YG+YF SP PAR+ YQVAALP    VEIE 
Sbjct: 101 LKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEA 160

Query: 213 IA 215
           +A
Sbjct: 161 VA 161

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BLAST of CmoCh04G010310 vs. Swiss-Prot
Match: UK114_MOUSE (Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-31
Identity = 64/123 (52.03%), Postives = 91/123 (73.98%), Query Frame = 1


Query: 92  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 151
           I++ + T KAPAA+GPYSQA++ +  +++SG +GL+P +G+ V   +  + +Q LKN+GE
Sbjct: 5   IRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGE 64

Query: 152 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 211
           ILKA G  +++VVKTT++LAD+ DF  VNEIY  YF    PAR+ YQVAALP  ++VEIE
Sbjct: 65  ILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIE 124

Query: 212 CIA 215
            IA
Sbjct: 125 AIA 127

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BLAST of CmoCh04G010310 vs. Swiss-Prot
Match: Y944_HELPY (RutC family protein HP_0944 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0944 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.6e-31
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 1


Query: 92  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 151
           +KE + +  AP A+GPYSQAI  N+L+FVSG LG++  TG+F   DI  QT Q ++N+  
Sbjct: 1   MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKA 60

Query: 152 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 211
           ILK  G G  SVVKTTI+L  L DF  VN IYG YF  P PAR+T+QVA LP DA VEIE
Sbjct: 61  ILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFTEPYPARATFQVAKLPKDALVEIE 120

Query: 212 CIA 215
            IA
Sbjct: 121 AIA 123

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BLAST of CmoCh04G010310 vs. TrEMBL
Match: A0A0A0L2Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077580 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.4e-87
Identity = 169/187 (90.37%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAAR  HMPA D+TALRSK+PLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGG+ YSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. TrEMBL
Match: W9R0G1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 4.7e-76
Identity = 154/188 (81.91%), Postives = 167/188 (88.83%), Query Frame = 1


Query: 30  MAWCAARALHMPALDITALRSKTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSIST 89
           MAWCAAR  +MPA ++ ALR +TPL A GVGCAS+AG+TL RSSS SKR  PFA L IST
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSS-SKRSAPFACLGIST 60

Query: 90  DASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKN 149
           D+  KEAVKT+KAPAALGPYSQAIKANN L+VSGVLGL PETGKF+SD++E QTEQVLKN
Sbjct: 61  DSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 150 MGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKV 209
           MGEILKAGGA YSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTYQVAALPLDAK+
Sbjct: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKI 180

Query: 210 EIECIATL 217
           EIECIA L
Sbjct: 181 EIECIAAL 187

[Close]

BLAST of CmoCh04G010310 vs. TrEMBL
Match: M5WJ62_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012000mg PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 8.8e-75
Identity = 148/187 (79.14%), Postives = 166/187 (88.77%), Query Frame = 1


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAAR+LH+P +D+ ALR++ PLAVGVG AS AG+TL RSS++SK    FA L+ISTD
Sbjct: 1   MAWCAARSLHLPTIDLGALRTRAPLAVGVGFASAAGSTLWRSSASSKPSSRFACLAISTD 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
           A IKEAV TDKAPAALGPYSQAIKANN + VSGVLGL PETGKF+S+++E QTEQVLKNM
Sbjct: 61  ARIKEAVHTDKAPAALGPYSQAIKANNFVHVSGVLGLIPETGKFISENVEDQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKA GA YSSVVKTTI+LADLKDFKKVNEIY KYFPSPAPARST+QVAALPLDAK+E
Sbjct: 121 GEILKASGANYSSVVKTTILLADLKDFKKVNEIYAKYFPSPAPARSTFQVAALPLDAKIE 180

Query: 210 IECIATL 217
           IECIA L
Sbjct: 181 IECIAAL 187

[Close]

BLAST of CmoCh04G010310 vs. TrEMBL
Match: A0A151U2B8_CAJCA (Ribonuclease UK114 family OS=Cajanus cajan GN=KK1_006029 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 8.8e-75
Identity = 146/186 (78.49%), Postives = 163/186 (87.63%), Query Frame = 1


Query: 31  AWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTDA 90
           +WC+AR  H+PA+D  A RS+  LA GVGC SVAGT+  RSSS+ KR +PF  LSIS+D 
Sbjct: 3   SWCSARCFHIPAMDAGAFRSRASLAAGVGCLSVAGTSFWRSSSSPKRSLPFTCLSISSDT 62

Query: 91  SIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMG 150
            IKE+V+T+ APAALGPYSQAIK+NNLLFVSGVLGL PETGKFVSD++E QTEQ+LKNMG
Sbjct: 63  RIKESVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDNVEDQTEQLLKNMG 122

Query: 151 EILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEI 210
           EILKAGGA YSSVVKTTIMLADLKDFKKVNEIY KYFPSP PARSTYQVAALPLDAK+EI
Sbjct: 123 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPFPARSTYQVAALPLDAKIEI 182

Query: 211 ECIATL 217
           ECIATL
Sbjct: 183 ECIATL 188

[Close]

BLAST of CmoCh04G010310 vs. TrEMBL
Match: D7T8C3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00390 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.4e-74
Identity = 150/188 (79.79%), Postives = 166/188 (88.30%), Query Frame = 1


Query: 30  MAW-CAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSIST 89
           MAW  AAR  +MPA+D+ ALR + PLAVG+GCASVA T+L RSSS+S R  P A LSIST
Sbjct: 1   MAWSAAARTFNMPAIDVGALRRRGPLAVGIGCASVATTSLWRSSSSSLRSKPLACLSIST 60

Query: 90  DASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKN 149
           D SIK+AV+TDKAPAALGPYSQAIKANNL+FVSGVLGL PETGKF+SD++E QTEQVLKN
Sbjct: 61  DTSIKQAVQTDKAPAALGPYSQAIKANNLVFVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 150 MGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKV 209
           MGEILKA GA YSSVVKTTIMLADLKDFKKVNEIY KYF +PAPARSTYQVAALPLDA++
Sbjct: 121 MGEILKASGASYSSVVKTTIMLADLKDFKKVNEIYAKYFHAPAPARSTYQVAALPLDARI 180

Query: 210 EIECIATL 217
           EIECIA L
Sbjct: 181 EIECIAAL 188

[Close]

BLAST of CmoCh04G010310 vs. TAIR10
Match: AT3G20390.1 (AT3G20390.1 endoribonuclease L-PSP family protein)

HSP 1 Score: 252.3 bits (643), Expect = 2.7e-67
Identity = 139/190 (73.16%), Postives = 157/190 (82.63%), Query Frame = 1


Query: 30  MAWCAARALHMPALDI-TALRS-KTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSI 89
           M W   R+++ P LD+ TALRS +TPL A GVGCA+ AG +L R SS   R  PFASLS+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSS---RSPPFASLSV 60

Query: 90  STDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 149
           S  +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ +E QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 150 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 209
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY KYFP+P+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 210 KVEIECIATL 217
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. NCBI nr
Match: gi|659126883|ref|XP_008463412.1| (PREDICTED: ribonuclease UK114-like [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 1.5e-88
Identity = 172/187 (91.98%), Postives = 178/187 (95.19%), Query Frame = 1


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCA R+ HMPA D+TALRSKTPLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSD++E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. NCBI nr
Match: gi|449470455|ref|XP_004152932.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 4.9e-87
Identity = 169/187 (90.37%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAAR  HMPA D+TALRSK+PLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGG+ YSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 210 IECIATL 217
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmoCh04G010310 vs. NCBI nr
Match: gi|1009110922|ref|XP_015898337.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 302.4 bits (773), Expect = 6.5e-79
Identity = 155/187 (82.89%), Postives = 169/187 (90.37%), Query Frame = 1


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAWCAAR  ++PA+D+ ALR++ PLAVGVG ASVAG+ + RSSS+ KR  PFA L ISTD
Sbjct: 1   MAWCAARTFNVPAIDVGALRTRAPLAVGVGFASVAGSNIWRSSSSMKRSAPFACLGISTD 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
             IKEAVKTDKAPAALGPYSQAIKANN L+VSGVLGL PETGKFVSD++E QTEQVLKNM
Sbjct: 61  TRIKEAVKTDKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFVSDNVEDQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTYQVAALPLDAK+E
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKIE 180

Query: 210 IECIATL 217
           IECIA+L
Sbjct: 181 IECIASL 187

[Close]

BLAST of CmoCh04G010310 vs. NCBI nr
Match: gi|703083218|ref|XP_010092158.1| (hypothetical protein L484_017847 [Morus notabilis])

HSP 1 Score: 292.4 bits (747), Expect = 6.7e-76
Identity = 154/188 (81.91%), Postives = 167/188 (88.83%), Query Frame = 1


Query: 30  MAWCAARALHMPALDITALRSKTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSIST 89
           MAWCAAR  +MPA ++ ALR +TPL A GVGCAS+AG+TL RSSS SKR  PFA L IST
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSS-SKRSAPFACLGIST 60

Query: 90  DASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKN 149
           D+  KEAVKT+KAPAALGPYSQAIKANN L+VSGVLGL PETGKF+SD++E QTEQVLKN
Sbjct: 61  DSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 150 MGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKV 209
           MGEILKAGGA YSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTYQVAALPLDAK+
Sbjct: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKI 180

Query: 210 EIECIATL 217
           EIECIA L
Sbjct: 181 EIECIAAL 187

[Close]

BLAST of CmoCh04G010310 vs. NCBI nr
Match: gi|470116422|ref|XP_004294381.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 290.0 bits (741), Expect = 3.3e-75
Identity = 150/187 (80.21%), Postives = 164/187 (87.70%), Query Frame = 1


Query: 30  MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 89
           MAW AAR+ HMP +D+ ALR++ PLAVGVGCASVAG+ L RSS +SK    FA L+ STD
Sbjct: 1   MAWTAARSFHMPTIDMAALRTRAPLAVGVGCASVAGSGLWRSSISSKPSSRFACLATSTD 60

Query: 90  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 149
             IKEAVKTDKAPAALGPYSQAIKANN+L+VSG LGL PETGKFVSDD+EGQTEQVLKNM
Sbjct: 61  TRIKEAVKTDKAPAALGPYSQAIKANNVLYVSGCLGLIPETGKFVSDDVEGQTEQVLKNM 120

Query: 150 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 209
           GEILKA GA YSSVVKTTI+LADLKDFK VNEIY KYFPSPAPARST+QVAALPLDAK+E
Sbjct: 121 GEILKASGADYSSVVKTTILLADLKDFKAVNEIYAKYFPSPAPARSTFQVAALPLDAKIE 180

Query: 210 IECIATL 217
           IECIA L
Sbjct: 181 IECIAAL 187

The following BLAST results are available for this feature:

BLAST of CmoCh04G010310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIDA_ARATH	4.8e-66	73.16	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA...	[more]
UK114_HUMAN	4.5e-32	51.22	Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1	[more]
YSD2_CAEEL	5.9e-32	54.10	RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3	[more]
UK114_MOUSE	1.0e-31	52.03	Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3	[more]
Y944_HELPY	8.6e-31	56.91	RutC family protein HP_0944 OS=Helicobacter pylori (strain ATCC 700392 / 26695) ...	[more]

BLAST of CmoCh04G010310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2Z6_CUCSA	3.4e-87	90.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077580 PE=4 SV=1	[more]
W9R0G1_9ROSA	4.7e-76	81.91	Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1	[more]
M5WJ62_PRUPE	8.8e-75	79.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012000mg PE=4 SV=1	[more]
A0A151U2B8_CAJCA	8.8e-75	78.49	Ribonuclease UK114 family OS=Cajanus cajan GN=KK1_006029 PE=4 SV=1	[more]
D7T8C3_VITVI	7.4e-74	79.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00390 PE=4 SV=...	[more]

BLAST of CmoCh04G010310 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20390.1	2.7e-67	73.16	endoribonuclease L-PSP family protein	[more]

BLAST of CmoCh04G010310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126883\|ref\|XP_008463412.1\|	1.5e-88	91.98	PREDICTED: ribonuclease UK114-like [Cucumis melo]	[more]
gi\|449470455\|ref\|XP_004152932.1\|	4.9e-87	90.37	PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus]	[more]
gi\|1009110922\|ref\|XP_015898337.1\|	6.5e-79	82.89	PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Ziziphus jujuba]	[more]
gi\|703083218\|ref\|XP_010092158.1\|	6.7e-76	81.91	hypothetical protein L484_017847 [Morus notabilis]	[more]
gi\|470116422\|ref\|XP_004294381.1\|	3.3e-75	80.21	PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Fragaria vesca subs...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006056	RidA
IPR006175	YjgF/YER057c/UK114
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like
IPR019897	RidA_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009082	branched-chain amino acid biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0019239	deaminase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G010310.1	CmoCh04G010310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006056	RidA family	TIGRFAMs	TIGR00004	TIGR00004	coord: 93..215 score: 1.8
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	TRANSLATION INITIATION INHIBITOR	coord: 47..216 score: 2.0
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 99..215 score: 5.5
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	GENE3D	G3DSA:3.30.1330.40		coord: 93..215 score: 2.7
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	unknown	SSF55298	YjgF-like	coord: 94..216 score: 7.07
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 192..210 scor
None	No IPR available	PANTHER	PTHR11803:SF13	RIBONUCLEASE UK114	coord: 47..216 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G010310	Cucsa.060000	Cucumber (Gy14) v1	cgycmoB0076
CmoCh04G010310	CmaCh04G009580	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G010310	Lsi05G005890	Bottle gourd (USVL1VR-Ls)	cmolsiB684
CmoCh04G010310	Cp4.1LG01g08100	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G010310	Carg00072	Silver-seed gourd	carcmoB0923

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G010310	CmoCh16G008950	Cucurbita moschata (Rifu)	cmocmoB290

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G010310	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G010310	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G010310	Melon (DHL92) v3.5.1	cmomeB684
CmoCh04G010310	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G010310	Watermelon (97103) v1	cmowmB653
CmoCh04G010310	Cucurbita pepo (Zucchini)	cmocpeB644
CmoCh04G010310	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G010310	Melon (DHL92) v3.6.1	cmomedB776
CmoCh04G010310	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G010310	Watermelon (97103) v2	cmowmbB689
CmoCh04G010310	Wax gourd	cmowgoB0817
CmoCh04G010310	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh04G010310	Cucurbita maxima (Rimu)	cmacmoB337