Cucsa.060000 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.060000
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	endoribonuclease L-PSP family protein
Location	scaffold00621 : 551925 .. 558796 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACACTAGTTAGTGAGCGGCTGAGTGCGAAGAGTGAGGACAGCTACACCCAGACGATCAGGGAGAAGAGCGATGGCTTGGTGTGCGGCTAGGACCTTTCACATGCCGGCGTTCGACGTCACTGCACTGCGTTCCAAGTCTCCCTTGGCCGTCGGCGTTGGTTGTGTATCGGTGGCCGGAACCACCTTGTGGCGATCTTCCTCAACTTCCAAGCGTCAAATTCCATTCGCCTCCCTCGGCATTTCCACCAGTTCTAGTACGCTCTCACTTTTCTGCTTTTTCCTTCGCTTTCTAGTCGCTCGTCCATCAAATTTTTGTTGCGGATTATCGATTGCTTTTCTCTGTTTGCATTTCCCGAAATCTCGATGGATTTTGTAGGGTTTATTTTGTGTTTCAGCTGAATGGTTATTGCAATTTTGAAATAGGGCATTTCTATGCGATTAGGTTTAAGCTTGGTGAGGGAATGTTGTTGACTGACGTTCTTCCCATTTCTAAGTAAGAAAATTTGTCATTTTGGAAAATTATTGTAGTTTGTTCGAAATGTACAGCTAATTTTGAGTTCTTTTCATCTTAAATTTAGAACCTACTTGCAAGTATTGGAGATGCTATAAAATGGTATATTTCTCACATAATCTCTGGGCGTTTGATGAGTGGGAATAATTAGCGGGGGACAAACACGAGGACTGTGTTAGGATTTCACTCTTAAAAACAATAAGAATCTGTTAGGCCGCCAATCATTCACAAATATAAAAGGAGGGGCAGAAAGGTCAATAGCCCGCAAATAAATGGTTGAGAAATTATTGGGGAAATTTTTTtGACATGTGGGGCCACAGGTAGAGGAGAGATATAAATAGAATGTTATAAAGGATAGTTGTAGGGAGAGCTTATTTTGACTAAAAAGCTGCTGGAGCTTAGAAAAGAGCTTTCCAGCCCTCTTTAAGGCGCTGGATATATTCTTGTATTTTTGCTTGGTTATTTTCTTGCTGAAATGATCTTGTGACTTCTTATTTTGGTAAAGTAATATGAATAATATAGAGTGCTGTCTCTGTTTTTAGCCTTTTGTTAGGATTATTTTGTTATCTTAAGGTTCTCTTTCAAAGTAATGATGGCTAAGTCTCTTTCTTTAAGCATCTTTTCTACAACATTATTTGGTGATCTCTTTTCTCCATTCGAAATCAAAGGGGGTGGTGGTTTGCTGAACACTAGTTGGAATGGAGTGGTTTTTGTTGATGCATGCAATGTGATATTGTACCATAATTCTGCCTATGGGATAAAATTGTGCCACTCGTTGGGTTGTTCATTGCAAAAGCATCTTAGTTATGTTTATGTTTCAAGGCACCTGTTGACTCTCAGTTTGGCCATCCGTTTGAGAATGGAAGGTTGTGCTTCTTTTTAAAGTAGTGCCCACATTGGTAAATAGCTCCTTCCAAAAATTGCTTAAAAATATTTTGTCTCGGTCAGTAATAATAGATTTAGGAACACATGCTTTCTTACCATTCTGTCTATAAAGGTTTCAGCCACTTGCTGAGAAAGGGTGCTTTAGGGTCACAAAGTAAGCATACTTACTTAACTTGTCCACCGCCACCATGATTACATTCACATTCCTAGACATAGGTAGACCCTACATGAAGTCCATAAACCAGTCTTCAAGTATGAGTTTTGGCAATGGAATTGGCTGCAATAGACCTACTGGTAGCGTTGATTAAGTCTTGTTTCTTTGGCAAATGTCACATTGTTTCTTTGCCAAATGTCACATTGTTCCTCATAGTTCTTTATATCAGTCTTCATCACTTCCCAATGAACTCCCCAATCATTCGTTTGTATGTTTTTAAGAACCCGGAGTGTCCTCCCAATATGAAGTCATGGAAAGTATGTAATAGTGTTGGTATCAATGATGAGTGTTTAGAAATCACCAATCTCCTCTTATAAAGCAGCCTACCATTTAACCATTGATACTTAGTATTTTCCTCCAGATTCTTCTTGACAGGTTCAACGATCTTTTGTAGTTCAAATCCTTTTCAACTTCCTTCAACACTACTTATATATCAATGACCCCGGGTGTAGTTATTACAGTTAACTCCGTTGATTGCTCCTCGGTTTGTTCTAATCTTGATAGGGCATCAACACCCTTGTTCTACTGGCTGGTACAAAATTTCGAAGTCGTAGCCTAGCAACATAGGGAGCCATCTTTAGAATTGAGGTTGTACCTCTCTTTGCTCTAATAGAAACTTGAGTGCCTCTTGATCTGAGATGATGGTGAATCTCCTCCCTAATACATAATGTCTCCATTTTTTGACTGCTAAGACCATGACCATTAGCTCCCTTTCATAGACTGATGTTGCTTGGTCCGGGGGTGAAAGCTTTTGGCTCAAGAAGGCAATGGGGTGTCTGTTATGTGGCAAAATTGCTCTCAAACCTATCCCAAATGCGTCAATCTCAATAACAAATGGCAACGACCGATCCAACAATTCTAAAACTGGAATGGAAACCATGGGTTTATTAACTGCTCAAAAGCTTTCGTTGCCTCATCATTCCATTTAAACGCATTCTTCTGTAAGGGCTTTGTCAGTGGTGCTGCAATCTCACCATAACTCCTTACAAATCTTCTGTAATAGCCAGTTTTTCCAAGGAAACAATTCTATAACATCCTTTGGTTGTGGCCGATTCATTCATTATCACTTAAATCTTATCTTCATCTGCCTCAACCTCCTTGGTAGAGATCCATTGACCTAGGTATTGTATTCTCTAATGGGCTATGGCACACTTCTGGTTTGCAAACAGTTGGTTATCCCTTAGAATGGCAAAGACCATTCCCAATTGTTTCTCATGCTCTGTTACATTCGTGCTATATTCCAGAATATCATAAAAAAAaCTAATACAAAACACCTCATGAAGGACGGAATACCTTAATACAAAATATAATAAAGGAGGTGTCCATATTTATAAGGCCTTACAGTAATAGGTCCCTATCCTGGTATAGTTAAAATGCGACGATCAACTTCCCTCTTGGGTTGTAGTCCAGGTGGGAGGGCAAAAATATCCTCATACTGCCGGAGGAGGAACTTAATCATTGGAAGATCTTCGTTTtCCCTTTTTCAACTTTCTCTTCATCCTAAATTGGCTCTTCCTCCACTTTTTCCCATGTTTGAGTGATAAGGGAGCACTCTGCCTTGATTAGTGATAGGTCCCTCTCAATATAATTGGCTTGTTTCCTACCCTAAACGACATTGTCAAGGTTGGCCAATGTATTCCCATAAAGCCTGTGATGCACAACCACTGCATTCCCAAAATGATATCCACCTTTCCTAACTCTACTGCCAAAAAGTCAGCAATGGTAGTCAACTCAGGCAACTTCACTTTCACCCTCTTGCATAACCCTCTTCCTTTTTAGTCTGATCCATCCCCAATAGTCGCCTCGAAAGCAATACCTTCAACAATTGCTCCTTGGTGAATAAAATTATGAGTGGCCCCACTGTCGATCAATATTATCACTTCCCCATCCTTCACTAAACCTCTGAGTTTCATAGTCCCCTTAGCTGAGAATCCCATAATCGTTCTTAATTCAATCTCTGCACCTGTTGGAACTTCTATCTTCTTTGAGGATTAGTTTGCAGCCCCTCCTAAACCTTGATTACTCAACTCTACTGCAACCAGTTTGAAGGCCAAGTTTCTGTCATTTACCAATTGAGCTTCCTCATACATGCCTCCAAGGTCTGTGAGTATCTACTCGCTACTTCTGCATGCAGGCAGAGAAGGTTCTAGCCCAGTTACAAAAGCATCCATAAGTATACTTTCAGCCATGTCAGGTAGAGGGGCCGAATATTTAAATTTTTTTTtACATAGTCATTGTAAGATCGATAAGTATACTTTCACCTATGGCTGTAAACTGTACTGAAAATTCATAGAGCAAGGAGCTGAGTGCAAATGAGTGGCTGATTAAATGGAAAAACCTACCAGAAATTGAAGCTACTTGGGAGTCAGTCTGCCAAATGAACCAACAGTTTCCCCAACTTCCACCTTGAGGACAAGGTGAATGTGGAACCAAGAGTATTATAAGACCTCTGATTATTCATCAATATAAAAGGAAGGGTAAGAAAATAATTATGCAGGGGACAGAGCTAGGAGAGAGAAATGGAGAAAGGAATGATGCTGGTGGGGCCACGAATGATGAGGAGTATAAATAGAATAATTTAGGGATTGGTGAGGTTAGGTTTTATATAGAAAAAGTCTGCTTTCCCTAAAGGAGAAGCTGCCAGCCTCCCAAAGAAGCTGGACTGTTTGGTGTGTTATTTCCTAGTTTTTTtCTTGTTATTTTCTTAATATTTCCTTGTATAAACTTGAGGTTTATTGAATATAATCAAATCACATAGTCCTGTCTCTGTTTCTACCCTTTTTGTTGGGATTATTACTGTTTAAAGAGGAAAATCGTAACAGATTATTATGGGAAATCTTAATTTTTAATTTTATCAAACAGCTTAAACAACGTATGAAAAAATTGGAGAGCTTTTTTTAATTCATAATCTAGTTGTATTGGAGAAAATAGTTCTTCTGTAAAGGCTCTGTTTTGGATAGTTGTAGATGATGATTCTTCCTTGGGGGAACAATGAATAGTTGTTCCTTCCTAATTGTTTCTGTTGAATGTTTATGACTGATGCATAATCACCTGGTCCACCCCGTAATATCAACTTCTTGTGTGGAAGGTATCAAGGAAGCTGTTCAGACTGACAAGGCTCCAGCGGCATTAGGGCCGTATTCTCAAGCTATCAAAGCCAACAACCTTCTGTTTGTGTCTGGTGTCCTGGGTCTAAATCCTGAGGTAGCTTCATCTAATTGTTATTGTTATTTTCTATTTGATTGTGCTTATGAGTGAGTAGATTAAGTGGGTTTTtGGATGCTAACCCGAGCATAGGTTGAAAGGTTGAAAGCAGAAACATAAGGTTAAAGTGGGTTTCTGTATGTGCACATTTTTAAGTTGCCTAATGGACTGTGTTTTTATGTTCTAATGTAGACGGGGAAATTTGTCTCAGATGACGTTGAAGACCAAACGGAGCAGGTATGTTGATTATGGTGCCTGCTCGCTCGTATCACGTTTGATCTGAATATCATAAATTCTGAGTGAATGAAATTTACAGGTCCTCAAAAATATGGGCGAAATATTGAAAGCTGGAGGTTCCGGCTATTCTTCCGTGGTTAAGACGACTATTATGTATGGAATTTTGGCCCCTTTTCTTGATGACCATAATAACCTTGCTCTATTAATATCTGAGAACTAGGGAATTGTTTAGTAGTTGTTTCAAAAAATGGTTTTATGTTTTTGTCTACCCAATCCCATCTACTTACAAGTTTTTCTGAGGGTGTAGATTCTATTTTATTCTACTTATCAAACCTTTTGTCTTAGCCTTTCAATTTTGTGATAAATATCATCTGTCTTATTAATTTTGTATAATTTATTCAATAGAAAGTCGACAAAATATACCTTTTGCCATTTTACATTTTTACTTGATGAGTAGATGTTGACGTGAAAAAGTATTTGAAAGCGAGTTCAACATGTAGTAAGTCATATGTAGTTGTAGGTGTTCAAAATGGATAAAGATTCGATAAAAAaTAAATTAACTGAAAATTTATGTGGGGACTAGAACATTTGAAATTGCGGACTTAAAAAGAATGGGTATGGAAGTTTATGTACAAAAATATACTTTAAACCTATTGCAAGAAATTGTCATCTGTTATGAGACAACTACTTTTAGAAGACATTTTATAGACATTGTTTTCAATAAAATAGTTATTCTAAAAGTAATGAAGACATCTCTCAGAAAACTCCCATATTTTTGTTTTtATTAAGTTCTTTCACAAATTTTCTTGCAGGTTGGCTGATCTGAAGGATTTCAAGAAAGTTAACGAGATATATGCTAAATGTAAGTTTTGCTAAACTGAACCTCTAATCTCTCTATTATCAAGTGCCGAGCTTGTACCTTAGATATGTCTGTATGATCTCTCCGTCTCCATTACGGTTCAACTTTAGTTTCTAGAGTACAGTTTATTTGAGTGAACTTGGAAATTTCAATTTCAACGAATTTTGAACGTGATTCTACTTGGAGAGAAAGATGAACTTTTCTTTGCAACAATTTACTTGGCCGACTTGCTGATTACTTTGATACATTGATATGTAGTTTTCTTTTGGGTCAATTATTGCGGGTCGGATTCCAATAGCTAGATAAAAATGTATTTATTGTTCATGGATTGACCTAGGGATAAAAAGAGTGAGGACATGAACTCGTTTTGAGGGCTAGTTATGGTAGCCAACTACCTAGGATTTAATATTCAATAAATTTCCTTGACACCTAAATGTTGTAAGGTAAAACTGGTTATCTTGTAAGATTAGTCAAAATGCATGTAAATTGACATGAATGCATAGGTGCACTTTTTCATTTTGTTTTCTTGGCTACTTTTTATTGTAGATTTTCCGTCCCCTGCTCCAGCTCGGTCGACATATGAGGTTGCAAGATTGCCTTTGGATGCTAAGGTCGAAATTGAGTGCATCGCTACACTTTGAACGCCTCTGACCTAATTTGAGGTACCCCAGTTTTCGAGACAGAATAAAATAATAAAATGGAGATACCAATCACAGCACAGGAACACTGGCTCTTGTTTTCGCTTAGGCTTTTCTTGTTATAGTATCGTAAGTGGTTGACATGAACATTAAGGTTAAACGTGCTTTTTGCCATTGAAAATCAAAGTTAGATGAACCATTTTGATCGATGAGATTACATGAATGCCTTCTTACATGAAATGTTAATATATTCAAATATTAAAATAATGTATACATGCTGCAAAATTCGAAAGGTGAACACAAAGGGGAAATATTTATATT

mRNA sequence

CAAACACTAGTTAGTGAGCGGCTGAGTGCGAAGAGTGAGGACAGCTACACCCAGACGATCAGGGAGAAGAGCGATGGCTTGGTGTGCGGCTAGGACCTTTCACATGCCGGCGTTCGACGTCACTGCACTGCGTTCCAAGTCTCCCTTGGCCGTCGGCGTTGGTTGTGTATCGGTGGCCGGAACCACCTTGTGGCGATCTTCCTCAACTTCCAAGCGTCAAATTCCATTCGCCTCCCTCGGCATTTCCACCAGTTCTAGTATCAAGGAAGCTGTTCAGACTGACAAGGCTCCAGCGGCATTAGGGCCGTATTCTCAAGCTATCAAAGCCAACAACCTTCTGTTTGTGTCTGGTGTCCTGGGTCTAAATCCTGAGACGGGGAAATTTGTCTCAGATGACGTTGAAGACCAAACGGAGCAGGTCCTCAAAAATATGGGCGAAATATTGAAAGCTGGAGGTTCCGGCTATTCTTCCGTGGTTAAGACGACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTTAACGAGATATATGCTAAATATTTTCCGTCCCCTGCTCCAGCTCGGTCGACATATGAGGTTGCAAGATTGCCTTTGGATGCTAAGGTCGAAATTGAGTGCATCGCTACACTTTGAACGCCTCTGACCTAATTTGAGGTACCCCAGTTTTCGAGACAGAATAAAATAATAAAATGGAGATACCAATCACAGCACAGGAACACTGGCTCTTGTTTTCGCTTAGGCTTTTCTTGTTATAGTATCGTAAGTGGTTGACATGAACATTAAGGTTAAACGTGCTTTTTGCCATTGAAAATCAAAGTTAGATGAACCATTTTGATCGATGAGATTACATGAATGCCTTCTTACATGAAATGTTAATATATTCAAATATTAAAATAATGTATACATGCTGCAAAATTCGAAAGGTGAACACAAAGGGGAAATATTTATATT

Coding sequence (CDS)

ATGGCTTGGTGTGCGGCTAGGACCTTTCACATGCCGGCGTTCGACGTCACTGCACTGCGTTCCAAGTCTCCCTTGGCCGTCGGCGTTGGTTGTGTATCGGTGGCCGGAACCACCTTGTGGCGATCTTCCTCAACTTCCAAGCGTCAAATTCCATTCGCCTCCCTCGGCATTTCCACCAGTTCTAGTATCAAGGAAGCTGTTCAGACTGACAAGGCTCCAGCGGCATTAGGGCCGTATTCTCAAGCTATCAAAGCCAACAACCTTCTGTTTGTGTCTGGTGTCCTGGGTCTAAATCCTGAGACGGGGAAATTTGTCTCAGATGACGTTGAAGACCAAACGGAGCAGGTCCTCAAAAATATGGGCGAAATATTGAAAGCTGGAGGTTCCGGCTATTCTTCCGTGGTTAAGACGACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTTAACGAGATATATGCTAAATATTTTCCGTCCCCTGCTCCAGCTCGGTCGACATATGAGGTTGCAAGATTGCCTTTGGATGCTAAGGTCGAAATTGAGTGCATCGCTACACTTTGA

Protein sequence

MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTSSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNMGEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVEIECIATL*

Homology

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BLAST of Cucsa.060000 vs. Swiss-Prot
Match: RIDA_ARATH (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.4e-66
Identity = 137/190 (72.11%), Postives = 156/190 (82.11%), Query Frame = 1


Query: 1   MAWCAARTFHMPAFDV-TALRS-KSPL-AVGVGCVSVAGTTLWRSSSTSKRQIPFASLGI 60
           M W   R+ + P  D+ TALRS ++PL A GVGC + AG +L+R SS S    PFASL +
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSSRSP---PFASLSV 60

Query: 61  STSSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVL 120
           S SS  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ VEDQTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 121 KNMGEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDA 180
           KNMGEILKA G+ YSSVVKTTIMLADL DFK VNEIYAKYFP+P+PARSTY+VA LPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 181 KVEIECIATL 188
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

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BLAST of Cucsa.060000 vs. Swiss-Prot
Match: UK114_HUMAN (Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-32
Identity = 64/126 (50.79%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 60  SSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKN 119
           SS I+  + T KAP A+GPYSQA+  +  +++SG +G++P +G+ VS  V ++ +Q LKN
Sbjct: 2   SSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKN 61

Query: 120 MGEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKV 179
           MGEILKA G  +++VVKTT++LAD+ DF  VNEIY +YF S  PAR+ Y+VA LP  +++
Sbjct: 62  MGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRI 121

Query: 180 EIECIA 186
           EIE +A
Sbjct: 122 EIEAVA 127

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BLAST of Cucsa.060000 vs. Swiss-Prot
Match: UK114_MOUSE (Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 139.4 bits (350), Expect = 4.0e-32
Identity = 65/126 (51.59%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 60  SSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKN 119
           SS I++ + T KAPAA+GPYSQA++ +  +++SG +GL+P +G+ V   V ++ +Q LKN
Sbjct: 2   SSIIRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKN 61

Query: 120 MGEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKV 179
           +GEILKA G  +++VVKTT++LAD+ DF  VNEIY  YF    PAR+ Y+VA LP  ++V
Sbjct: 62  LGEILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRV 121

Query: 180 EIECIA 186
           EIE IA
Sbjct: 122 EIEAIA 127

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BLAST of Cucsa.060000 vs. Swiss-Prot
Match: UK114_RAT (Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 7.5e-31
Identity = 63/126 (50.00%), Postives = 91/126 (72.22%), Query Frame = 1


Query: 60  SSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKN 119
           SS I++ + T KAPAA+G YSQA+  +  ++VSG +G++P +G+ V   V ++ +Q LKN
Sbjct: 2   SSIIRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKN 61

Query: 120 MGEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKV 179
           +GEILKA G  +++VVKTT++LAD+ DF  VNEIY  YF    PAR+ Y+VA LP  +++
Sbjct: 62  LGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRI 121

Query: 180 EIECIA 186
           EIE IA
Sbjct: 122 EIEAIA 127

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BLAST of Cucsa.060000 vs. Swiss-Prot
Match: UK114_BOVIN (Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3)

HSP 1 Score: 133.7 bits (335), Expect = 2.2e-30
Identity = 61/126 (48.41%), Postives = 91/126 (72.22%), Query Frame = 1


Query: 60  SSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKN 119
           SS +++ + T KAPAA+GPYSQA+  +  +++SG LG++P +G+ V   V ++ +Q L N
Sbjct: 2   SSLVRKIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVAEEAKQALTN 61

Query: 120 MGEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKV 179
           +GEILKA G  +++VVK T++LAD+ DF  VN++Y +YF S  PAR+ Y+VA LP   +V
Sbjct: 62  IGEILKAAGCDFTNVVKATVLLADINDFSTVNDVYKQYFQSSFPARAAYQVAALPKGGRV 121

Query: 180 EIECIA 186
           EIE IA
Sbjct: 122 EIEAIA 127

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BLAST of Cucsa.060000 vs. TrEMBL
Match: A0A0A0L2Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077580 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 6.4e-98
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60
           MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120
           SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180
           GEILKAGGS YSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

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BLAST of Cucsa.060000 vs. TrEMBL
Match: W9R0G1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 3.0e-79
Identity = 155/188 (82.45%), Postives = 170/188 (90.43%), Query Frame = 1


Query: 1   MAWCAARTFHMPAFDVTALRSKSPLAV-GVGCVSVAGTTLWRSSSTSKRQIPFASLGIST 60
           MAWCAARTF+MPA ++ ALR ++PLA  GVGC S+AG+TLWRSSS SKR  PFA LGIST
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSS-SKRSAPFACLGIST 60

Query: 61  SSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKN 120
            S  KEAV+T+KAPAALGPYSQAIKANN L+VSGVLGL PETGKF+SD+VEDQTEQVLKN
Sbjct: 61  DSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 121 MGEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKV 180
           MGEILKAGG+ YSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTY+VA LPLDAK+
Sbjct: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKI 180

Query: 181 EIECIATL 188
           EIECIA L
Sbjct: 181 EIECIAAL 187

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BLAST of Cucsa.060000 vs. TrEMBL
Match: A0A151U2B8_CAJCA (Ribonuclease UK114 family OS=Cajanus cajan GN=KK1_006029 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 4.3e-78
Identity = 147/186 (79.03%), Postives = 166/186 (89.25%), Query Frame = 1


Query: 2   AWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTSS 61
           +WC+AR FH+PA D  A RS++ LA GVGC+SVAGT+ WRSSS+ KR +PF  L IS+ +
Sbjct: 3   SWCSARCFHIPAMDAGAFRSRASLAAGVGCLSVAGTSFWRSSSSPKRSLPFTCLSISSDT 62

Query: 62  SIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNMG 121
            IKE+VQT+ APAALGPYSQAIK+NNLLFVSGVLGL PETGKFVSD+VEDQTEQ+LKNMG
Sbjct: 63  RIKESVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDNVEDQTEQLLKNMG 122

Query: 122 EILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVEI 181
           EILKAGG+ YSSVVKTTIMLADLKDFKKVNEIYAKYFPSP PARSTY+VA LPLDAK+EI
Sbjct: 123 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPFPARSTYQVAALPLDAKIEI 182

Query: 182 ECIATL 188
           ECIATL
Sbjct: 183 ECIATL 188

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BLAST of Cucsa.060000 vs. TrEMBL
Match: D7T8C3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00390 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.2e-77
Identity = 152/188 (80.85%), Postives = 167/188 (88.83%), Query Frame = 1


Query: 1   MAW-CAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGIST 60
           MAW  AARTF+MPA DV ALR + PLAVG+GC SVA T+LWRSSS+S R  P A L IST
Sbjct: 1   MAWSAAARTFNMPAIDVGALRRRGPLAVGIGCASVATTSLWRSSSSSLRSKPLACLSIST 60

Query: 61  SSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKN 120
            +SIK+AVQTDKAPAALGPYSQAIKANNL+FVSGVLGL PETGKF+SD+VEDQTEQVLKN
Sbjct: 61  DTSIKQAVQTDKAPAALGPYSQAIKANNLVFVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 121 MGEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKV 180
           MGEILKA G+ YSSVVKTTIMLADLKDFKKVNEIYAKYF +PAPARSTY+VA LPLDA++
Sbjct: 121 MGEILKASGASYSSVVKTTIMLADLKDFKKVNEIYAKYFHAPAPARSTYQVAALPLDARI 180

Query: 181 EIECIATL 188
           EIECIA L
Sbjct: 181 EIECIAAL 188

[Close]

BLAST of Cucsa.060000 vs. TrEMBL
Match: C6T4P6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G291100 PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.8e-77
Identity = 144/186 (77.42%), Postives = 167/186 (89.78%), Query Frame = 1


Query: 2   AWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTSS 61
           +WC AR+F +PA + +ALR+++ LA GVGC+SVAGT+ WRSSS+ KR +PF  L IS+ +
Sbjct: 3   SWCGARSFQIPAMEDSALRNRASLAAGVGCLSVAGTSFWRSSSSPKRSLPFTCLSISSDT 62

Query: 62  SIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNMG 121
            IKE+VQT+ APAALGPYSQAIK+NNL+FVSGVLGL PETGKFVSDDVEDQTEQ+LKNMG
Sbjct: 63  RIKESVQTEGAPAALGPYSQAIKSNNLIFVSGVLGLVPETGKFVSDDVEDQTEQLLKNMG 122

Query: 122 EILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVEI 181
           EILKAGG+ YSSVVKTTIMLADLKDFKKVNEIYAKYFPSP PARSTY+VA LPLDAK+EI
Sbjct: 123 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPFPARSTYQVAALPLDAKIEI 182

Query: 182 ECIATL 188
           ECIAT+
Sbjct: 183 ECIATI 188

[Close]

BLAST of Cucsa.060000 vs. TAIR10
Match: AT3G20390.1 (AT3G20390.1 endoribonuclease L-PSP family protein)

HSP 1 Score: 253.8 bits (647), Expect = 8.1e-68
Identity = 137/190 (72.11%), Postives = 156/190 (82.11%), Query Frame = 1


Query: 1   MAWCAARTFHMPAFDV-TALRS-KSPL-AVGVGCVSVAGTTLWRSSSTSKRQIPFASLGI 60
           M W   R+ + P  D+ TALRS ++PL A GVGC + AG +L+R SS S    PFASL +
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSSRSP---PFASLSV 60

Query: 61  STSSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVL 120
           S SS  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ VEDQTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 121 KNMGEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDA 180
           KNMGEILKA G+ YSSVVKTTIMLADL DFK VNEIYAKYFP+P+PARSTY+VA LPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 181 KVEIECIATL 188
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

[Close]

BLAST of Cucsa.060000 vs. NCBI nr
Match: gi|449470455|ref|XP_004152932.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus])

HSP 1 Score: 364.8 bits (935), Expect = 9.2e-98
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60
           MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120
           SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180
           GEILKAGGS YSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Cucsa.060000 vs. NCBI nr
Match: gi|659126883|ref|XP_008463412.1| (PREDICTED: ribonuclease UK114-like [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 4.7e-94
Identity = 178/187 (95.19%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60
           MAWCA R+FHMPAFDVTALRSK+PLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120
           SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSD+VEDQTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180
           GEILKAGG+ YSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Cucsa.060000 vs. NCBI nr
Match: gi|1009110922|ref|XP_015898337.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 314.3 bits (804), Expect = 1.4e-82
Identity = 157/187 (83.96%), Postives = 173/187 (92.51%), Query Frame = 1


Query: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60
           MAWCAARTF++PA DV ALR+++PLAVGVG  SVAG+ +WRSSS+ KR  PFA LGIST 
Sbjct: 1   MAWCAARTFNVPAIDVGALRTRAPLAVGVGFASVAGSNIWRSSSSMKRSAPFACLGISTD 60

Query: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120
           + IKEAV+TDKAPAALGPYSQAIKANN L+VSGVLGL PETGKFVSD+VEDQTEQVLKNM
Sbjct: 61  TRIKEAVKTDKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180
           GEILKAGG+GYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTY+VA LPLDAK+E
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKIE 180

Query: 181 IECIATL 188
           IECIA+L
Sbjct: 181 IECIASL 187

[Close]

BLAST of Cucsa.060000 vs. NCBI nr
Match: gi|703083218|ref|XP_010092158.1| (hypothetical protein L484_017847 [Morus notabilis])

HSP 1 Score: 302.8 bits (774), Expect = 4.3e-79
Identity = 155/188 (82.45%), Postives = 170/188 (90.43%), Query Frame = 1


Query: 1   MAWCAARTFHMPAFDVTALRSKSPLAV-GVGCVSVAGTTLWRSSSTSKRQIPFASLGIST 60
           MAWCAARTF+MPA ++ ALR ++PLA  GVGC S+AG+TLWRSSS SKR  PFA LGIST
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSS-SKRSAPFACLGIST 60

Query: 61  SSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKN 120
            S  KEAV+T+KAPAALGPYSQAIKANN L+VSGVLGL PETGKF+SD+VEDQTEQVLKN
Sbjct: 61  DSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 121 MGEILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKV 180
           MGEILKAGG+ YSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTY+VA LPLDAK+
Sbjct: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKI 180

Query: 181 EIECIATL 188
           EIECIA L
Sbjct: 181 EIECIAAL 187

[Close]

BLAST of Cucsa.060000 vs. NCBI nr
Match: gi|1012362221|gb|KYP73404.1| (Ribonuclease UK114 family [Cajanus cajan])

HSP 1 Score: 298.9 bits (764), Expect = 6.2e-78
Identity = 147/186 (79.03%), Postives = 166/186 (89.25%), Query Frame = 1


Query: 2   AWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTSS 61
           +WC+AR FH+PA D  A RS++ LA GVGC+SVAGT+ WRSSS+ KR +PF  L IS+ +
Sbjct: 3   SWCSARCFHIPAMDAGAFRSRASLAAGVGCLSVAGTSFWRSSSSPKRSLPFTCLSISSDT 62

Query: 62  SIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNMG 121
            IKE+VQT+ APAALGPYSQAIK+NNLLFVSGVLGL PETGKFVSD+VEDQTEQ+LKNMG
Sbjct: 63  RIKESVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDNVEDQTEQLLKNMG 122

Query: 122 EILKAGGSGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVEI 181
           EILKAGG+ YSSVVKTTIMLADLKDFKKVNEIYAKYFPSP PARSTY+VA LPLDAK+EI
Sbjct: 123 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPFPARSTYQVAALPLDAKIEI 182

Query: 182 ECIATL 188
           ECIATL
Sbjct: 183 ECIATL 188

The following BLAST results are available for this feature:

BLAST of Cucsa.060000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIDA_ARATH	1.4e-66	72.11	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA...	[more]
UK114_HUMAN	1.8e-32	50.79	Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1	[more]
UK114_MOUSE	4.0e-32	51.59	Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3	[more]
UK114_RAT	7.5e-31	50.00	Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3	[more]
UK114_BOVIN	2.2e-30	48.41	Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3	[more]

BLAST of Cucsa.060000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2Z6_CUCSA	6.4e-98	99.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077580 PE=4 SV=1	[more]
W9R0G1_9ROSA	3.0e-79	82.45	Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1	[more]
A0A151U2B8_CAJCA	4.3e-78	79.03	Ribonuclease UK114 family OS=Cajanus cajan GN=KK1_006029 PE=4 SV=1	[more]
D7T8C3_VITVI	2.2e-77	80.85	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00390 PE=4 SV=...	[more]
C6T4P6_SOYBN	4.8e-77	77.42	Uncharacterized protein OS=Glycine max GN=GLYMA_02G291100 PE=2 SV=1	[more]

BLAST of Cucsa.060000 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20390.1	8.1e-68	72.11	endoribonuclease L-PSP family protein	[more]

BLAST of Cucsa.060000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470455\|ref\|XP_004152932.1\|	9.2e-98	99.47	PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus]	[more]
gi\|659126883\|ref\|XP_008463412.1\|	4.7e-94	95.19	PREDICTED: ribonuclease UK114-like [Cucumis melo]	[more]
gi\|1009110922\|ref\|XP_015898337.1\|	1.4e-82	83.96	PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Ziziphus jujuba]	[more]
gi\|703083218\|ref\|XP_010092158.1\|	4.3e-79	82.45	hypothetical protein L484_017847 [Morus notabilis]	[more]
gi\|1012362221\|gb\|KYP73404.1\|	6.2e-78	79.03	Ribonuclease UK114 family [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006056	RidA
IPR006175	YjgF/YER057c/UK114
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like
IPR019897	RidA_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009082	branched-chain amino acid biosynthetic process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005773	vacuole
molecular_function	GO:0019239	deaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.060000.1	Cucsa.060000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006056	RidA family	TIGRFAMs	TIGR00004	TIGR00004	coord: 64..186 score: 3.3
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	TRANSLATION INITIATION INHIBITOR	coord: 18..187 score: 7.8
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 70..186 score: 1.5
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	GENE3D	G3DSA:3.30.1330.40		coord: 64..186 score: 1.2
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	unknown	SSF55298	YjgF-like	coord: 64..187 score: 3.93
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 163..181 scor
None	No IPR available	PANTHER	PTHR11803:SF13	RIBONUCLEASE UK114	coord: 18..187 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.060000	Cla005315	Watermelon (97103) v1	cgywmB048
Cucsa.060000	Csa3G076580	Cucumber (Chinese Long) v2	cgycuB044
Cucsa.060000	MELO3C025369	Melon (DHL92) v3.5.1	cgymeB048
Cucsa.060000	ClCG10G005350	Watermelon (Charleston Gray)	cgywcgB049
Cucsa.060000	CSPI03G05070	Wild cucumber (PI 183967)	cgycpiB044
Cucsa.060000	CmaCh16G008660	Cucurbita maxima (Rimu)	cgycmaB0080
Cucsa.060000	CmaCh04G009580	Cucurbita maxima (Rimu)	cgycmaB0081
Cucsa.060000	CmoCh04G010310	Cucurbita moschata (Rifu)	cgycmoB0076
Cucsa.060000	CmoCh16G008950	Cucurbita moschata (Rifu)	cgycmoB0075
Cucsa.060000	Lsi05G005890	Bottle gourd (USVL1VR-Ls)	cgylsiB048
Cucsa.060000	MELO3C025369.2	Melon (DHL92) v3.6.1	cgymedB047
Cucsa.060000	CsaV3_3G005070	Cucumber (Chinese Long) v3	cgycucB046
Cucsa.060000	Cla97C10G189600	Watermelon (97103) v2	cgywmbB048
Cucsa.060000	Bhi11G000476	Wax gourd	cgywgoB049

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.060000	Silver-seed gourd	carcgyB0738
Cucsa.060000	Cucurbita pepo (Zucchini)	cgycpeB0077