CmaCh04G009580 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G009580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Putative aminoacrylate peracid reductase RutC
Location	Cma_Chr04 : 4914594 .. 4918334 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACGTACTAAAAAGGAGACGTTTTTTGTGTATTGCAAAGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGGTTCTCAGTGCGAAGAGTGAAGAGGAAAGCGGGACCTAGACGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTTTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCGGCATTTCTACCGATACTAGTACGCCCTCGTTTTTCTGCTTATATCCGATCGATTCCTCTTTTTTCGTCGATCAATTTTCGCTATGGATCAGTGATATCGGTTTTGTGTTGTCCTTGACTCTTGTTTTGTCGAAACCTCGATGGATTTTGTAGGGTTTAGTTTGTATTTCAGCTCAGTAGCTATTAGAACTTTGAAATCTGAGCGTTCTTTGCGATTAGGTATAAGCTTGGTGATTATTCTATTCACAGCGTTAACTTAGATTGGAGGATCTTTTTGGTATCCCCCCTTATGTAGAAGGGTCTCCTTGTCCCTTGGTCCGCTAGGCTGTTTTGGTCGCTTAGGCGTATTTATTCAATGGACGTGTTGAATTCTTTCCTATATATATACATATAAAGTAATGCGGAAGATAATTCTTTGGAGGCTTTCTTTTTCATAGTTCCAACTTTCGGGAAGAATCAAATAATTTTTCTTTTCTAATTTTCTTTTTTATGAATGCTTATAACAGATGCATAACCACCCCTTACTATCAATTTCTTGGGTGGCAGGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGGTAGCTTCATTACTTTATTATTGTTATTTTCTATTTGATAGTGTATATGATTTGATTAAGGGAATGTTTGGGAGTGGTTTCTCTTATATCATGCCGTTTTGAGTGGTACAAGATGATTTTGGCTATTCCAAAATCACTCCAATTCATTCCCTAAGTGGGTTTTTGGATGCTGACTAGGGCATAGCTTGGAAGGTTGAATATTTAAAAATATTGGTATGAAAAAAAAAAAAAAAATACAGAAGGATGGAGTGGGTTTCATTGTGTGCGCATGTTCGTGTTATTGGGCTGCCTAATAGAGTGTTTATCTTCATGTTCCAATACAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTAATGTTCATTTAGTAGGGTAGTTGCTCGTATCATGTCCATGTAAATTGAACTTTTGAGCTGGATATAAAAAATTATAAGTCAATGGAATTTGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCAGCTATTCTTCCGTGGTCAAGACAACTATTATGTACGAACTTTTGGCCTCTTTTCTTTCTGATCATAATATCTTCTCTCTTTAATTTAAATAAGATCTGAATAACTAAGGAGTTGATGGTAATTGTTTTAAAACATGGTTTTCTGCTTTTGTATACTTTTAAGAACAATTTTTTGAGTGACTTATTAAAGTTAAGATAATTGTCCACAACAAACACTATTTACTAGTTATTCTGCTTGGTTCTATTTTCCATTTTTATGTTTATTCTATTTATTTAACCTTATGCCTTAACCCTGTACGCTTTGTATTAAAAATCATTTGTCTTTTTCATTAGTTTTGCATAATTCATTTCAGAAACTTGACAAAGTATACCTTTTGCCAATTTACTTGATGAGTAGATTCACGAAAGTATTTAAAGCTAGATCAAGATGTTAGTCATTCTTTGGGTTCAAAATGGACAAGGATTTCGTTAAATAAATTGTTATAATTAAATTTATAACAATTTAATCCTACCATGAAAAATCTCATAAAAACTAAGTGCCAGTTTTTATATGTAATGATTTAGACTTTCTAACTTATAAACACATTTGGTCGCTTTTTAGTTTTTTAATTGATATATGTAAGAAATTCCATTCCATCCTTATAGTATTTTTCACAGTAAGCGACTAAATGGTCTCTTGAAAAACTTGACTAAACTATTCCAAGTTTTCAAGTATAGGGACTAATGGTTACATATATAAGTTGAGAGATTGAATTGTTTGAAACTAAACTGTTACAAACTAAAACATAGAGACTAATTTGTTACTTTTATTGAAGTTCGAGGACCAAAAGTGTTTTTTAACATCCACTTAGTAATCTTTTTAGTATTGAAAGTGTCTTTCAGAACATTCCCACGTTTTTCCTGTGATTCAGTTCTTTCTTCGCAAATCTTTCCTGCAGGTTGGCTGATCTGAAGGATTTCAAGAAAGTTAATGAGATTTATGGTAAATGTAAGTTTCGTTAGACTGAACCTCTAATCTCTCTCTCTTATCTAATGCTGAGCATTTAATTTAGATATGCCTTTATGATCACTCTCTATCCCCATTACAGTTCAACTTTAGTTTCTAGAATATAGTTATCTGAGTGAGTTAGAAAATTACAACTTGGATAAATTTTGTATATGATTCTACTTGGTGAAAAAGATGAACTTTTCTTTTTCGCTTTTTATCTGGCTGTGTGATATCTACTACTACTTGGTGGTCTGGTTACTTTGATACATTGGTTTGTGGTTTTCTTTTGGACCAGTTATTGTGGGTCAGATCATAACAAGTAGATGTTTCATTTACTGAAGGATAATTTAAGTCCTGGTGAATTTGTGATTCTATCTATGTTGAGATAAGGATGCATTCTTCACTTTTACAGACTCCAAGCTCAAGTTGAGATTATTTTCACATTGTCTTATTTGCCACTTTTTATGCAGACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCATTGCCTTTGGATGCCAAGGTTGAAATTGAGTGCATCGCTACACTTTGAGATCTTACCTAGTTACAGGTACCCACCCAGCTTTGAAGACATCATAAATTAATAAGATGGAGATAGCAATCACGGGAACACCCCAAAATCCCATGTGGCTTTTGTATTCCCTGAGACTTTCTTCTTGTTACAGTAGAGTGTAACCGCTTGACGGTCAGTGCTTTTTAGCAGTGAAACTTGAAGTTAGATGAAACATATTGATATTGTTGTTGCCTTGAGTTTTGCAAAATAAGCATCCAACAGGTCAATAGATAAGAGTAGAGAAAACCTTGGAATCCACTTATCCGTTTAGCTCCTCTTCCAAAAAACCAACTTTCTTTCCATTGAACATAACCAAGCCTAAGAAGATTTGGCGTTTAGGGATTTTAGCCAGAAGTCATTGAAAATTCTTCAGGATGGTGCTTCACAAGAAGTGCTTTATTAAAACGTTTGTTGGTCTCTCTGGGTTTAGAGCTCAAACTCCGAAGGCGTCCATCATAAACTGTCCAATTCTTCCAAAGACATCCTCTCTCTCTCCCATTCCTGCCCTGCCCAGCCCAGCCCAGCCCAGCCCAGAAATAAGAGACACCGGTACATCTTGATGAAGAGTGGCGGCAAGACGGACACTCCCAATCAATCACGTGGAATTGCGACGGGATGGTGCACTCGCCTAGGCTTTGATTTCTCAAACAAATTGGGGTGATCGATCATTTGGAATTGATGGATCATTTTGGGTTCGTG

mRNA sequence

TTACGTACTAAAAAGGAGACGTTTTTTGTGTATTGCAAAGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGGTTCTCAGTGCGAAGAGTGAAGAGGAAAGCGGGACCTAGACGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTTTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCGGCATTTCTACCGATACTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCAGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTTAATGAGATTTATGGTAAATACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCATTGCCTTTGGATGCCAAGGTTGAAATTGAGTGCATCGCTACACTTTGAGATCTTACCTAGTTACAGGTACCCACCCAGCTTTGAAGACATCATAAATTAATAAGATGGAGATAGCAATCACGGGAACACCCCAAAATCCCATGTGGCTTTTGTATTCCCTGAGACTTTCTTCTTGTTACAGTAGAGTGTAACCGCTTGACGGTCAGTGCTTTTTAGCAGTGAAACTTGAAGTTAGATGAAACATATTGATATTGTTGTTGCCTTGAGTTTTGCAAAATAAGCATCCAACAGGTCAATAGATAAGAGTAGAGAAAACCTTGGAATCCACTTATCCGTTTAGCTCCTCTTCCAAAAAACCAACTTTCTTTCCATTGAACATAACCAAGCCTAAGAAGATTTGGCGTTTAGGGATTTTAGCCAGAAGTCATTGAAAATTCTTCAGGATGGTGCTTCACAAGAAGTGCTTTATTAAAACGTTTGTTGGTCTCTCTGGGTTTAGAGCTCAAACTCCGAAGGCGTCCATCATAAACTGTCCAATTCTTCCAAAGACATCCTCTCTCTCTCCCATTCCTGCCCTGCCCAGCCCAGCCCAGCCCAGCCCAGAAATAAGAGACACCGGTACATCTTGATGAAGAGTGGCGGCAAGACGGACACTCCCAATCAATCACGTGGAATTGCGACGGGATGGTGCACTCGCCTAGGCTTTGATTTCTCAAACAAATTGGGGTGATCGATCATTTGGAATTGATGGATCATTTTGGGTTCGTG

Coding sequence (CDS)

ATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTTTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCGGCATTTCTACCGATACTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCAGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTTAATGAGATTTATGGTAAATACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCATTGCCTTTGGATGCCAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

Protein sequence

MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTDTSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIECIATL

Homology

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BLAST of CmaCh04G009580 vs. Swiss-Prot
Match: RIDA_ARATH (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-65
Identity = 137/190 (72.11%), Postives = 155/190 (81.58%), Query Frame = 1


Query: 1   MAWCAARALHMPALDI-TALRS-KTPL-AVGVGCASVAGTTFCRSSSTSKRQIPFASLGI 60
           M W   R+++ P LD+ TALRS +TPL A GVGCA+ AG +  R SS S    PFASL +
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSSRSP---PFASLSV 60

Query: 61  STDTSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 120
           S  +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ +E QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 121 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 180
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY KYFP+P+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 181 KVEIECIATL 188
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

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BLAST of CmaCh04G009580 vs. Swiss-Prot
Match: UK114_HUMAN (Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.0e-32
Identity = 63/123 (51.22%), Postives = 91/123 (73.98%), Query Frame = 1


Query: 63  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 122
           I+  + T KAP A+GPYSQA+  +  +++SG +G++P +G+ VS  +  + +Q LKNMGE
Sbjct: 5   IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGE 64

Query: 123 ILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 182
           ILKA G  +++VVKTT++LAD+ DF  VNEIY +YF S  PAR+ YQVAALP  +++EIE
Sbjct: 65  ILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIE 124

Query: 183 CIA 186
            +A
Sbjct: 125 AVA 127

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BLAST of CmaCh04G009580 vs. Swiss-Prot
Match: YSD2_CAEEL (RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 5.1e-32
Identity = 66/122 (54.10%), Postives = 90/122 (73.77%), Query Frame = 1


Query: 64  KEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEI 123
           ++ + +  AP A+GPYSQA++A N +++SG LGL+P+TG      +E QT Q LKN+GE+
Sbjct: 41  RQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVE-QTHQSLKNLGEV 100

Query: 124 LKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIEC 183
           LKA GA Y +VVKTT++L ++ DF  VNE+YG+YF SP PAR+ YQVAALP    VEIE 
Sbjct: 101 LKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEA 160

Query: 184 IA 186
           +A
Sbjct: 161 VA 161

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BLAST of CmaCh04G009580 vs. Swiss-Prot
Match: UK114_MOUSE (Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-32
Identity = 64/123 (52.03%), Postives = 91/123 (73.98%), Query Frame = 1


Query: 63  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 122
           I++ + T KAPAA+GPYSQA++ +  +++SG +GL+P +G+ V   +  + +Q LKN+GE
Sbjct: 5   IRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGE 64

Query: 123 ILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 182
           ILKA G  +++VVKTT++LAD+ DF  VNEIY  YF    PAR+ YQVAALP  ++VEIE
Sbjct: 65  ILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIE 124

Query: 183 CIA 186
            IA
Sbjct: 125 AIA 127

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BLAST of CmaCh04G009580 vs. Swiss-Prot
Match: UK114_RAT (Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-30
Identity = 62/123 (50.41%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 63  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 122
           I++ + T KAPAA+G YSQA+  +  ++VSG +G++P +G+ V   +  + +Q LKN+GE
Sbjct: 5   IRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGE 64

Query: 123 ILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 182
           ILKA G  +++VVKTT++LAD+ DF  VNEIY  YF    PAR+ YQVAALP  +++EIE
Sbjct: 65  ILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIE 124

Query: 183 CIA 186
            IA
Sbjct: 125 AIA 127

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BLAST of CmaCh04G009580 vs. TrEMBL
Match: A0A0A0L2Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077580 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.7e-88
Identity = 170/187 (90.91%), Postives = 177/187 (94.65%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTD 60
           MAWCAAR  HMPA D+TALRSK+PLAVGVGC SVAGTT  RSSSTSKRQIPFASLGIST 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  TSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGG+SYSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmaCh04G009580 vs. TrEMBL
Match: W9R0G1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.8e-77
Identity = 155/188 (82.45%), Postives = 168/188 (89.36%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAV-GVGCASVAGTTFCRSSSTSKRQIPFASLGIST 60
           MAWCAAR  +MPA ++ ALR +TPLA  GVGCAS+AG+T  RSSS SKR  PFA LGIST
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSS-SKRSAPFACLGIST 60

Query: 61  DTSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKN 120
           D+  KEAVKT+KAPAALGPYSQAIKANN L+VSGVLGL PETGKF+SD++E QTEQVLKN
Sbjct: 61  DSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKV 180
           MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTYQVAALPLDAK+
Sbjct: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKI 180

Query: 181 EIECIATL 188
           EIECIA L
Sbjct: 181 EIECIAAL 187

[Close]

BLAST of CmaCh04G009580 vs. TrEMBL
Match: A0A151U2B8_CAJCA (Ribonuclease UK114 family OS=Cajanus cajan GN=KK1_006029 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.4e-76
Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 1


Query: 2   AWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTDT 61
           +WC+AR  H+PA+D  A RS+  LA GVGC SVAGT+F RSSS+ KR +PF  L IS+DT
Sbjct: 3   SWCSARCFHIPAMDAGAFRSRASLAAGVGCLSVAGTSFWRSSSSPKRSLPFTCLSISSDT 62

Query: 62  SIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMG 121
            IKE+V+T+ APAALGPYSQAIK+NNLLFVSGVLGL PETGKFVSD++E QTEQ+LKNMG
Sbjct: 63  RIKESVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDNVEDQTEQLLKNMG 122

Query: 122 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEI 181
           EILKAGGASYSSVVKTTIMLADLKDFKKVNEIY KYFPSP PARSTYQVAALPLDAK+EI
Sbjct: 123 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPFPARSTYQVAALPLDAKIEI 182

Query: 182 ECIATL 188
           ECIATL
Sbjct: 183 ECIATL 188

[Close]

BLAST of CmaCh04G009580 vs. TrEMBL
Match: C6T4P6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G291100 PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.6e-75
Identity = 145/186 (77.96%), Postives = 166/186 (89.25%), Query Frame = 1


Query: 2   AWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTDT 61
           +WC AR+  +PA++ +ALR++  LA GVGC SVAGT+F RSSS+ KR +PF  L IS+DT
Sbjct: 3   SWCGARSFQIPAMEDSALRNRASLAAGVGCLSVAGTSFWRSSSSPKRSLPFTCLSISSDT 62

Query: 62  SIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMG 121
            IKE+V+T+ APAALGPYSQAIK+NNL+FVSGVLGL PETGKFVSDD+E QTEQ+LKNMG
Sbjct: 63  RIKESVQTEGAPAALGPYSQAIKSNNLIFVSGVLGLVPETGKFVSDDVEDQTEQLLKNMG 122

Query: 122 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEI 181
           EILKAGGASYSSVVKTTIMLADLKDFKKVNEIY KYFPSP PARSTYQVAALPLDAK+EI
Sbjct: 123 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPFPARSTYQVAALPLDAKIEI 182

Query: 182 ECIATL 188
           ECIAT+
Sbjct: 183 ECIATI 188

[Close]

BLAST of CmaCh04G009580 vs. TrEMBL
Match: D7T8C3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00390 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.2e-74
Identity = 150/188 (79.79%), Postives = 166/188 (88.30%), Query Frame = 1


Query: 1   MAW-CAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGIST 60
           MAW  AAR  +MPA+D+ ALR + PLAVG+GCASVA T+  RSSS+S R  P A L IST
Sbjct: 1   MAWSAAARTFNMPAIDVGALRRRGPLAVGIGCASVATTSLWRSSSSSLRSKPLACLSIST 60

Query: 61  DTSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKN 120
           DTSIK+AV+TDKAPAALGPYSQAIKANNL+FVSGVLGL PETGKF+SD++E QTEQVLKN
Sbjct: 61  DTSIKQAVQTDKAPAALGPYSQAIKANNLVFVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKV 180
           MGEILKA GASYSSVVKTTIMLADLKDFKKVNEIY KYF +PAPARSTYQVAALPLDA++
Sbjct: 121 MGEILKASGASYSSVVKTTIMLADLKDFKKVNEIYAKYFHAPAPARSTYQVAALPLDARI 180

Query: 181 EIECIATL 188
           EIECIA L
Sbjct: 181 EIECIAAL 188

[Close]

BLAST of CmaCh04G009580 vs. TAIR10
Match: AT3G20390.1 (AT3G20390.1 endoribonuclease L-PSP family protein)

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-66
Identity = 137/190 (72.11%), Postives = 155/190 (81.58%), Query Frame = 1


Query: 1   MAWCAARALHMPALDI-TALRS-KTPL-AVGVGCASVAGTTFCRSSSTSKRQIPFASLGI 60
           M W   R+++ P LD+ TALRS +TPL A GVGCA+ AG +  R SS S    PFASL +
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSSRSP---PFASLSV 60

Query: 61  STDTSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 120
           S  +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ +E QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 121 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 180
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY KYFP+P+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 181 KVEIECIATL 188
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

[Close]

BLAST of CmaCh04G009580 vs. NCBI nr
Match: gi|659126883|ref|XP_008463412.1| (PREDICTED: ribonuclease UK114-like [Cucumis melo])

HSP 1 Score: 337.8 bits (865), Expect = 1.2e-89
Identity = 173/187 (92.51%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTD 60
           MAWCA R+ HMPA D+TALRSKTPLAVGVGC SVAGTT  RSSSTSKRQIPFASLGIST 
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  TSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSD++E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmaCh04G009580 vs. NCBI nr
Match: gi|449470455|ref|XP_004152932.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus])

HSP 1 Score: 332.8 bits (852), Expect = 3.9e-88
Identity = 170/187 (90.91%), Postives = 177/187 (94.65%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTD 60
           MAWCAAR  HMPA D+TALRSK+PLAVGVGC SVAGTT  RSSSTSKRQIPFASLGIST 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  TSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGG+SYSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of CmaCh04G009580 vs. NCBI nr
Match: gi|1009110922|ref|XP_015898337.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 304.7 bits (779), Expect = 1.1e-79
Identity = 156/187 (83.42%), Postives = 169/187 (90.37%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTD 60
           MAWCAAR  ++PA+D+ ALR++ PLAVGVG ASVAG+   RSSS+ KR  PFA LGISTD
Sbjct: 1   MAWCAARTFNVPAIDVGALRTRAPLAVGVGFASVAGSNIWRSSSSMKRSAPFACLGISTD 60

Query: 61  TSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           T IKEAVKTDKAPAALGPYSQAIKANN L+VSGVLGL PETGKFVSD++E QTEQVLKNM
Sbjct: 61  TRIKEAVKTDKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTYQVAALPLDAK+E
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKIE 180

Query: 181 IECIATL 188
           IECIA+L
Sbjct: 181 IECIASL 187

[Close]

BLAST of CmaCh04G009580 vs. NCBI nr
Match: gi|703083218|ref|XP_010092158.1| (hypothetical protein L484_017847 [Morus notabilis])

HSP 1 Score: 295.4 bits (755), Expect = 6.8e-77
Identity = 155/188 (82.45%), Postives = 168/188 (89.36%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAV-GVGCASVAGTTFCRSSSTSKRQIPFASLGIST 60
           MAWCAAR  +MPA ++ ALR +TPLA  GVGCAS+AG+T  RSSS SKR  PFA LGIST
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSS-SKRSAPFACLGIST 60

Query: 61  DTSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKN 120
           D+  KEAVKT+KAPAALGPYSQAIKANN L+VSGVLGL PETGKF+SD++E QTEQVLKN
Sbjct: 61  DSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKV 180
           MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTYQVAALPLDAK+
Sbjct: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKI 180

Query: 181 EIECIATL 188
           EIECIA L
Sbjct: 181 EIECIAAL 187

[Close]

BLAST of CmaCh04G009580 vs. NCBI nr
Match: gi|1012362221|gb|KYP73404.1| (Ribonuclease UK114 family [Cajanus cajan])

HSP 1 Score: 293.1 bits (749), Expect = 3.4e-76
Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 1


Query: 2   AWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTDT 61
           +WC+AR  H+PA+D  A RS+  LA GVGC SVAGT+F RSSS+ KR +PF  L IS+DT
Sbjct: 3   SWCSARCFHIPAMDAGAFRSRASLAAGVGCLSVAGTSFWRSSSSPKRSLPFTCLSISSDT 62

Query: 62  SIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMG 121
            IKE+V+T+ APAALGPYSQAIK+NNLLFVSGVLGL PETGKFVSD++E QTEQ+LKNMG
Sbjct: 63  RIKESVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDNVEDQTEQLLKNMG 122

Query: 122 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEI 181
           EILKAGGASYSSVVKTTIMLADLKDFKKVNEIY KYFPSP PARSTYQVAALPLDAK+EI
Sbjct: 123 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPFPARSTYQVAALPLDAKIEI 182

Query: 182 ECIATL 188
           ECIATL
Sbjct: 183 ECIATL 188

The following BLAST results are available for this feature:

BLAST of CmaCh04G009580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIDA_ARATH	2.1e-65	72.11	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA...	[more]
UK114_HUMAN	3.0e-32	51.22	Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1	[more]
YSD2_CAEEL	5.1e-32	54.10	RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3	[more]
UK114_MOUSE	6.7e-32	52.03	Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3	[more]
UK114_RAT	1.3e-30	50.41	Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3	[more]

BLAST of CmaCh04G009580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2Z6_CUCSA	2.7e-88	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077580 PE=4 SV=1	[more]
W9R0G1_9ROSA	4.8e-77	82.45	Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1	[more]
A0A151U2B8_CAJCA	2.4e-76	79.57	Ribonuclease UK114 family OS=Cajanus cajan GN=KK1_006029 PE=4 SV=1	[more]
C6T4P6_SOYBN	2.6e-75	77.96	Uncharacterized protein OS=Glycine max GN=GLYMA_02G291100 PE=2 SV=1	[more]
D7T8C3_VITVI	2.2e-74	79.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00390 PE=4 SV=...	[more]

BLAST of CmaCh04G009580 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20390.1	1.2e-66	72.11	endoribonuclease L-PSP family protein	[more]

BLAST of CmaCh04G009580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126883\|ref\|XP_008463412.1\|	1.2e-89	92.51	PREDICTED: ribonuclease UK114-like [Cucumis melo]	[more]
gi\|449470455\|ref\|XP_004152932.1\|	3.9e-88	90.91	PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus]	[more]
gi\|1009110922\|ref\|XP_015898337.1\|	1.1e-79	83.42	PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Ziziphus jujuba]	[more]
gi\|703083218\|ref\|XP_010092158.1\|	6.8e-77	82.45	hypothetical protein L484_017847 [Morus notabilis]	[more]
gi\|1012362221\|gb\|KYP73404.1\|	3.4e-76	79.57	Ribonuclease UK114 family [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006056	RidA
IPR006175	YjgF/YER057c/UK114
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like
IPR019897	RidA_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009082	branched-chain amino acid biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0019239	deaminase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G009580.1	CmaCh04G009580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006056	RidA family	TIGRFAMs	TIGR00004	TIGR00004	coord: 64..186 score: 4.3
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	TRANSLATION INITIATION INHIBITOR	coord: 18..187 score: 2.5
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 70..186 score: 1.3
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	GENE3D	G3DSA:3.30.1330.40		coord: 64..186 score: 4.2
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	unknown	SSF55298	YjgF-like	coord: 64..187 score: 2.36
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 163..181 scor
None	No IPR available	PANTHER	PTHR11803:SF13	RIBONUCLEASE UK114	coord: 18..187 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G009580	Cucsa.060000	Cucumber (Gy14) v1	cgycmaB0081
CmaCh04G009580	Cla005315	Watermelon (97103) v1	cmawmB659
CmaCh04G009580	ClCG10G005350	Watermelon (Charleston Gray)	cmawcgB614
CmaCh04G009580	CmoCh04G010310	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G009580	CmoCh16G008950	Cucurbita moschata (Rifu)	cmacmoB704
CmaCh04G009580	Lsi05G005890	Bottle gourd (USVL1VR-Ls)	cmalsiB691
CmaCh04G009580	Cp4.1LG01g08100	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G009580	Cla97C10G189600	Watermelon (97103) v2	cmawmbB718
CmaCh04G009580	CsGy3G005140	Cucumber (Gy14) v2	cgybcmaB416
CmaCh04G009580	Carg00072	Silver-seed gourd	carcmaB0948

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G009580	CmaCh16G008660	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G009580	Melon (DHL92) v3.6.1	cmamedB780
CmaCh04G009580	Cucumber (Chinese Long) v3	cmacucB0837
CmaCh04G009580	Wax gourd	cmawgoB0821
CmaCh04G009580	Cucurbita maxima (Rimu)	cmacmaB331
CmaCh04G009580	Cucurbita moschata (Rifu)	cmacmoB699
CmaCh04G009580	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G009580	Wild cucumber (PI 183967)	cmacpiB710
CmaCh04G009580	Cucumber (Chinese Long) v2	cmacuB702
CmaCh04G009580	Melon (DHL92) v3.5.1	cmameB693
CmaCh04G009580	Cucurbita pepo (Zucchini)	cmacpeB692