CsGy3G005140 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G005140
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Putative aminoacrylate peracid reductase RutC
Location	Chr3 : 4091944 .. 4094444 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAAAACAAGTTTAATTAGAAAGAAAAGAAAAAAAAAAAGAGAAAGGGTGGTGGGGTGGTCCTCCTAAACCTCAATAAAAAGGTGCGTAAATGAAGCAATGAGATTCATTGGACGGACTAAAACTATAGTGTGGGAGGAAGAAATCTAGAAGTAAAAAAGGAGAAGTCGCAGATGGCTATGTCCGCAGCTCACACCCTCCAAATTCCGGCCTCCACCGCCATTACACGGAGGCGATCCATCACTCCCTCTGCCGGCACCGCCGTGTCCTTGTGGAGGCGGCCTTCACCGGCCATTCCATCTATTTCAAGCCATCAAATGTCCTTCAAATGCCATGCCATTTCCAAGTGTACTACTGGTATTAATACGTCCCCTCATTCTCTTTGACCTATTTGGCTTCATCAATTTTCCTTTTTAAATCTTATTTTAAAGAAATTATTTATCCATTTTTATGTTAAAATAGCATTTTTTATAAAAGAAAAATATAAACAACCTATTTTGATAAAAAAAAAAATGATTATTGAATTCCTCTACGACAACATAAAAAAAACGGAAAAAAATAAAGTTAGTTAAAAAAGAAAAAAATAAAAATAAAATACATCTATCATACACAAGAAAATAAATAGTTGAGATGTTGAAAATATGCATTTTAATAAAAACAAATGAATTAGGGAATTTTCCACAACTTTTAACAACTATCTCTATTAGTACGACACTATTTTGATGTGGTATCAAAAGCAAAATTATATGGGTGTATGTTTAAAGTAAAAATTATCGCATGAAGATATGTAAAGTTCTTCTGTCGTTACCAAATTCAAATGATTTTAATACTTTTAAACATTTTTTAGAGAAAATTATCTTTAGTTTCAAAATTTTGACGAATATGTGCAAAAATATTAAAAGTATCTACAAAAATGTAGGAAAAAATTTCAAATCTGATCAATCGATAGACCTCTAATAGATACAAAATTTGTTATATATTATAAATATTTATTAGTTTATTTGACTAGTTTTTATATCTTTTTAGTTTTTAAATTTATAAAAATAGATTTGAAATAATAACCCATTTTAAATTGTAATATTAACTTTGATCTACACAAATCACTAAACAAAAAAATTAGATCTTAAATGAAACGTAACAAATTTAAGGTAAAATTTATATTTTTTTTCCCTAAAGATTATTCCACCACTTAATACCAATGTTTGTTTTGTGGCAGAAATCATAGGCATTGCAACTGACAATGCCCCAGAAGCATTGGGGCCATATTCTCAGGGAATCATAGCCAACAATCTTGTATATGTATCTGGCTCCCTTGGTCTAATTCCTGAGGTACTGTTTTTCAATGTTTAACATAAACATAGTTCAATTGATCAGTTCGGTTTCAATTATTTGTCATGAGTTCGTGCTCGACACGTATAATTGAGTATGTTTTTGGTTTGATGCAGACAGGGCAATTGATCTCAGATGATGTTGGAGAGCAAACTGAGCAGGTTATTGTTATTTTCTTTCTTTAAAAAGAAAGAAAAATTAAATTTTGTTAGCATTAATTTCTGAGGAAATGAAATATTATTATGCAGGCCCTAAAAAATGTTGGTGCAATATTGAGAGCTGGAGGGGCTGATTATGATAGAGTGATTAAGACAACTATTATGTATGAAATCTTGAGTTGCAATCATTTTGCATCTATAGCCATCTTTTATCCCATGTTTTGGAAAATTGTACTCTCGCAGCTTTCGTTTCAAGAATTAGTCATTTGTTTGTTCTTCTCATTTTGTTTTTGGCAGGTTGGCTAATGTAGCAGATTTTACATTAGTAAATGAGATTTATGGAAAATGTAAGTTCTTTTCAAATGAATCATTTCAAAAGATCAAGAACATGGCATTTAAAGTTGTAAGTTGTTTGTTTTTTGACAGATTTTCCAAACAGCCCTGCACCAGCAAGATCAACATTTGCAGCTGGAGCATTACCCAAAAATGCTAAGATTGAAATTGATGCAATAGCTGTGCTTTGAATTGGAAGTTTATATTAATATAGTTTTTGAAGGCAACATTATCATCATAAATTTAAATAAGTTGGAGCGTTGGAGATATATAGCTTATGAAAGGGAACATATTCACCAAATTTACTATTTGGTTTGTGTATTATTACCTTATCTAGGCTTTATCTTGTTACCAACGTTTTATTATTGTAATAACTTTATATTTTCACTATCATATGCATTTAAGCTGTGGAAGTGAAAATAAAGAGGTAATGGAAGATAGTGTTGTCTTGGTTATATGAAGAGCTTTTCTCAATGCTACAATGCCTTAAATTACTACTTTTATTCAAATGTTTTCTCATTTAAGTGGTTTTCTTTCCCACAAATATATTAAAATAGGATTCTTTTTTCAAATAAATTTATCCAATCCACGTATCAAGGACTAATTACTAGTGTGTAGGTTGTTGTGGTGTATTTAGAGTATTTTTAAAGGTTCGTATTCTTTCTTTAAGTGTATTCTTC

mRNA sequence

ATAAAAAACAAGTTTAATTAGAAAGAAAAGAAAAAAAAAAAGAGAAAGGGTGGTGGGGTGGTCCTCCTAAACCTCAATAAAAAGGTGCGTAAATGAAGCAATGAGATTCATTGGACGGACTAAAACTATAGTGTGGGAGGAAGAAATCTAGAAGTAAAAAAGGAGAAGTCGCAGATGGCTATGTCCGCAGCTCACACCCTCCAAATTCCGGCCTCCACCGCCATTACACGGAGGCGATCCATCACTCCCTCTGCCGGCACCGCCGTGTCCTTGTGGAGGCGGCCTTCACCGGCCATTCCATCTATTTCAAGCCATCAAATGTCCTTCAAATGCCATGCCATTTCCAAGTGTACTACTGAAATCATAGGCATTGCAACTGACAATGCCCCAGAAGCATTGGGGCCATATTCTCAGGGAATCATAGCCAACAATCTTGTATATGTATCTGGCTCCCTTGGTCTAATTCCTGAGACAGGGCAATTGATCTCAGATGATGTTGGAGAGCAAACTGAGCAGGCCCTAAAAAATGTTGGTGCAATATTGAGAGCTGGAGGGGCTGATTATGATAGAGTGATTAAGACAACTATTATGTTGGCTAATGTAGCAGATTTTACATTAGTAAATGAGATTTATGGAAAATATTTTCCAAACAGCCCTGCACCAGCAAGATCAACATTTGCAGCTGGAGCATTACCCAAAAATGCTAAGATTGAAATTGATGCAATAGCTGTGCTTTGAATTGGAAGTTTATATTAATATAGTTTTTGAAGGCAACATTATCATCATAAATTTAAATAAGTTGGAGCGTTGGAGATATATAGCTTATGAAAGGGAACATATTCACCAAATTTACTATTTGGTTTGTGTATTATTACCTTATCTAGGCTTTATCTTGTTACCAACGTTTTATTATTGTAATAACTTTATATTTTCACTATCATATGCATTTAAGCTGTGGAAGTGAAAATAAAGAGGTAATGGAAGATAGTGTTGTCTTGGTTATATGAAGAGCTTTTCTCAATGCTACAATGCCTTAAATTACTACTTTTATTCAAATGTTTTCTCATTTAAGTGGTTTTCTTTCCCACAAATATATTAAAATAGGATTCTTTTTTCAAATAAATTTATCCAATCCACGTATCAAGGACTAATTACTAGTGTGTAGGTTGTTGTGGTGTATTTAGAGTATTTTTAAAGGTTCGTATTCTTTCTTTAAGTGTATTCTTC

Coding sequence (CDS)

ATGGCTATGTCCGCAGCTCACACCCTCCAAATTCCGGCCTCCACCGCCATTACACGGAGGCGATCCATCACTCCCTCTGCCGGCACCGCCGTGTCCTTGTGGAGGCGGCCTTCACCGGCCATTCCATCTATTTCAAGCCATCAAATGTCCTTCAAATGCCATGCCATTTCCAAGTGTACTACTGAAATCATAGGCATTGCAACTGACAATGCCCCAGAAGCATTGGGGCCATATTCTCAGGGAATCATAGCCAACAATCTTGTATATGTATCTGGCTCCCTTGGTCTAATTCCTGAGACAGGGCAATTGATCTCAGATGATGTTGGAGAGCAAACTGAGCAGGCCCTAAAAAATGTTGGTGCAATATTGAGAGCTGGAGGGGCTGATTATGATAGAGTGATTAAGACAACTATTATGTTGGCTAATGTAGCAGATTTTACATTAGTAAATGAGATTTATGGAAAATATTTTCCAAACAGCCCTGCACCAGCAAGATCAACATTTGCAGCTGGAGCATTACCCAAAAATGCTAAGATTGAAATTGATGCAATAGCTGTGCTTTGA

Protein sequence

MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCTTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIAVL

Homology

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BLAST of CsGy3G005140 vs. NCBI nr
Match: NP_001267661.1 (chordin [Cucumis sativus] >ABA18632.1 plastid-lipid associated protein [Cucumis sativus] >ABA18633.1 plastid-lipid associated protein [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 2.0e-96
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of CsGy3G005140 vs. NCBI nr
Match: KGN56122.1 (Plastid-lipid associated protein [Cucumis sativus])

HSP 1 Score: 354.0 bits (907), Expect = 3.2e-94
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITRRRSITPSA TAVSLWRRPSPAIPSISS QMSFKCHAISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSASTAVSLWRRPSPAIPSISSRQMSFKCHAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPN PAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNCPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of CsGy3G005140 vs. NCBI nr
Match: XP_008463411.1 (PREDICTED: ribonuclease UK114-like [Cucumis melo])

HSP 1 Score: 337.4 bits (864), Expect = 3.1e-89
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITR RS TPSAGTAVSLWRRP PAIPSISS QMSFKC AISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRGRSFTPSAGTAVSLWRRPLPAIPSISSRQMSFKCLAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEI GIATDNAPEALGPYSQGIIANN++YVSGSLGLIP+TG+LISDDVGEQTEQALKNVG
Sbjct: 61  TEIKGIATDNAPEALGPYSQGIIANNILYVSGSLGLIPKTGELISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRV+KTTIMLANVADFTLVNEIY KYFPNSPAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVVKTTIMLANVADFTLVNEIYAKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of CsGy3G005140 vs. NCBI nr
Match: XP_023552960.1 (2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 143/187 (76.47%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MA   AHT QIPAS  I+R R++TPS G AVSLWRRPS +IPSIS+  MSFKCHAIS+C 
Sbjct: 1   MAYCTAHTFQIPASNVISRPRTVTPSVGAAVSLWRRPS-SIPSISNRNMSFKCHAISEC- 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
            +I  IAT+ APEALGPYSQGIIANN ++VSGSLGLIPETG+LISD VG+QTEQALKN+G
Sbjct: 61  DDITPIATEEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGDQTEQALKNIG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AIL+AGG DY+RV+KTTIMLA+VADF LVNEIY KYF   PAPARSTF AGALPKNAKIE
Sbjct: 121 AILKAGGVDYNRVVKTTIMLADVADFALVNEIYAKYFSEYPAPARSTFQAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAV+
Sbjct: 181 IDAIAVV 185

[Close]

BLAST of CsGy3G005140 vs. NCBI nr
Match: XP_022985268.1 (2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita maxima])

HSP 1 Score: 273.1 bits (697), Expect = 7.1e-70
Identity = 142/187 (75.94%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MA   AHT QIPAS  I+R R++TPS G AVSLWRRPS +IPSIS+  MSFKCHAISKC 
Sbjct: 1   MAYCTAHTFQIPASNVISRPRTVTPSVGAAVSLWRRPS-SIPSISNRNMSFKCHAISKC- 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
            +I  I T+ APEALGPYSQGIIANN ++VSGSLGLIPETG+LISD VGEQ EQALKN+G
Sbjct: 61  DDITTIETNEAPEALGPYSQGIIANNFIFVSGSLGLIPETGELISDHVGEQAEQALKNIG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AIL+AGGADY+RV+KTTIMLA+VADF LVN+IY +YF   PAPARSTF AGALPKNAKIE
Sbjct: 121 AILKAGGADYNRVVKTTIMLADVADFALVNQIYARYFSEYPAPARSTFQAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAV+
Sbjct: 181 IDAIAVV 185

[Close]

BLAST of CsGy3G005140 vs. TAIR10
Match: AT3G20390.1 (endoribonuclease L-PSP family protein)

HSP 1 Score: 164.1 bits (414), Expect = 8.4e-41
Identity = 94/188 (50.00%), Postives = 121/188 (64.36%), Query Frame = 0


Query: 1   MAMSAAHTLQIPASTAITRRRSI-TPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKC 60
           M  S   ++  P     T  RS  TP     V        ++  +SS    F   ++S  
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSSRSPPFASLSVSAS 60

Query: 61  TTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNV 120
           + +   ++T+ AP ALGPYSQ I ANNLV++SG LGLIPETG+ +S+ V +QTEQ LKN+
Sbjct: 61  SVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNM 120

Query: 121 GAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKI 180
           G IL+A GADY  V+KTTIMLA++ADF  VNEIY KYFP +P+PARST+   ALP NAKI
Sbjct: 121 GEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFP-APSPARSTYQVAALPLNAKI 180

Query: 181 EIDAIAVL 188
           EI+ IA L
Sbjct: 181 EIECIATL 187

[Close]

BLAST of CsGy3G005140 vs. TAIR10
Match: AT3G04480.1 (endoribonucleases)

HSP 1 Score: 41.2 bits (95), Expect = 8.2e-04
Identity = 20/52 (38.46%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 71  APEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAI 123
           AP  +GPYSQ  +  ++++++G LGL P T  L ++    +  QAL N  AI
Sbjct: 424 APSCIGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAI 475

[Close]

BLAST of CsGy3G005140 vs. Swiss-Prot
Match: sp|Q94JQ4|RIDA_ARATH (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RIDA PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 94/188 (50.00%), Postives = 121/188 (64.36%), Query Frame = 0


Query: 1   MAMSAAHTLQIPASTAITRRRSI-TPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKC 60
           M  S   ++  P     T  RS  TP     V        ++  +SS    F   ++S  
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSSRSPPFASLSVSAS 60

Query: 61  TTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNV 120
           + +   ++T+ AP ALGPYSQ I ANNLV++SG LGLIPETG+ +S+ V +QTEQ LKN+
Sbjct: 61  SVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNM 120

Query: 121 GAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKI 180
           G IL+A GADY  V+KTTIMLA++ADF  VNEIY KYFP +P+PARST+   ALP NAKI
Sbjct: 121 GEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFP-APSPARSTYQVAALPLNAKI 180

Query: 181 EIDAIAVL 188
           EI+ IA L
Sbjct: 181 EIECIATL 187

[Close]

BLAST of CsGy3G005140 vs. Swiss-Prot
Match: sp|Q10121|YSD2_CAEEL (RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-32
Identity = 71/129 (55.04%), Postives = 94/129 (72.87%), Query Frame = 0


Query: 58  KCTTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALK 117
           K T +II  A  NAP A+GPYSQ + A N +Y+SGSLGL P+TG L  + V EQT Q+LK
Sbjct: 38  KVTRQIISSA--NAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDL-KEGVVEQTHQSLK 97

Query: 118 NVGAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNA 177
           N+G +L+A GADY  V+KTT++L N+ADF  VNE+YG+YF  SP PAR+ +   ALPK  
Sbjct: 98  NLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYF-KSPYPARAAYQVAALPKGG 157

Query: 178 KIEIDAIAV 187
            +EI+A+A+
Sbjct: 158 LVEIEAVAI 162

[Close]

BLAST of CsGy3G005140 vs. Swiss-Prot
Match: sp|P52758|RIDA_HUMAN (2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.3e-30
Identity = 60/121 (49.59%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 66  IATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRA 125
           I+T  AP A+GPYSQ ++ +  +Y+SG +G+ P +GQL+S  V E+ +QALKN+G IL+A
Sbjct: 9   ISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKA 68

Query: 126 GGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIA 185
            G D+  V+KTT++LA++ DF  VNEIY +YF  S  PAR+ +   ALPK ++IEI+A+A
Sbjct: 69  AGCDFTNVVKTTVLLADINDFNTVNEIYKQYF-KSNFPARAAYQVAALPKGSRIEIEAVA 128

Query: 186 V 187
           +
Sbjct: 129 I 128

[Close]

BLAST of CsGy3G005140 vs. Swiss-Prot
Match: sp|P52759|RIDA_RAT (2-iminobutanoate/2-iminopropanoate deaminase OS=Rattus norvegicus OX=10116 GN=Rida PE=1 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-28
Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 66  IATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRA 125
           I+T  AP A+G YSQ ++ +  +YVSG +G+ P +GQL+   V E+ +QALKN+G IL+A
Sbjct: 9   ISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKA 68

Query: 126 GGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIA 185
            G D+  V+KTT++LA++ DF  VNEIY  YF  +  PAR+ +   ALPK ++IEI+AIA
Sbjct: 69  AGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGN-LPARAAYQVAALPKGSRIEIEAIA 128

Query: 186 V 187
           V
Sbjct: 129 V 128

[Close]

BLAST of CsGy3G005140 vs. Swiss-Prot
Match: sp|Q3T114|RIDA_BOVIN (2-iminobutanoate/2-iminopropanoate deaminase OS=Bos taurus OX=9913 GN=RIDA PE=2 SV=3)

HSP 1 Score: 126.7 bits (317), Expect = 2.7e-28
Identity = 57/121 (47.11%), Postives = 87/121 (71.90%), Query Frame = 0


Query: 66  IATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRA 125
           I+T  AP A+GPYSQ ++ +  +Y+SG LG+ P +GQL+   V E+ +QAL N+G IL+A
Sbjct: 9   ISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVAEEAKQALTNIGEILKA 68

Query: 126 GGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIA 185
            G D+  V+K T++LA++ DF+ VN++Y +YF +S  PAR+ +   ALPK  ++EI+AIA
Sbjct: 69  AGCDFTNVVKATVLLADINDFSTVNDVYKQYFQSS-FPARAAYQVAALPKGGRVEIEAIA 128

Query: 186 V 187
           V
Sbjct: 129 V 128

[Close]

BLAST of CsGy3G005140 vs. TrEMBL
Match: tr|A0RZC7|A0RZC7_CUCSA (Plastid-lipid associated protein OS=Cucumis sativus OX=3659 GN=CHRD PE=2 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.3e-96
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of CsGy3G005140 vs. TrEMBL
Match: tr|A0A0A0L6A5|A0A0A0L6A5_CUCSA (Plastid-lipid associated protein OS=Cucumis sativus OX=3659 GN=Csa_3G076580 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 2.1e-94
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITRRRSITPSA TAVSLWRRPSPAIPSISS QMSFKCHAISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSASTAVSLWRRPSPAIPSISSRQMSFKCHAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPN PAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNCPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of CsGy3G005140 vs. TrEMBL
Match: tr|A0A1S3CJ80|A0A1S3CJ80_CUCME (ribonuclease UK114-like OS=Cucumis melo OX=3656 GN=LOC103501582 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 2.0e-89
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITR RS TPSAGTAVSLWRRP PAIPSISS QMSFKC AISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRGRSFTPSAGTAVSLWRRPLPAIPSISSRQMSFKCLAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEI GIATDNAPEALGPYSQGIIANN++YVSGSLGLIP+TG+LISDDVGEQTEQALKNVG
Sbjct: 61  TEIKGIATDNAPEALGPYSQGIIANNILYVSGSLGLIPKTGELISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRV+KTTIMLANVADFTLVNEIY KYFPNSPAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVVKTTIMLANVADFTLVNEIYAKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]

BLAST of CsGy3G005140 vs. TrEMBL
Match: tr|A0RZD0|A0RZD0_SOLLC (Inducible plastid-lipid associated protein OS=Solanum lycopersicum OX=4081 GN=CHRD PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 92/144 (63.89%), Postives = 110/144 (76.39%), Query Frame = 0


Query: 43  SISSHQMSFKCHAISKCTTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQ 102
           S+++ ++ F C A +    E   I+TD AP A+GPYSQGI ANN +YVSGSLGLIPETG+
Sbjct: 34  SVANSRVPFVCLASTGKKEE---ISTDKAPAAVGPYSQGIKANNFIYVSGSLGLIPETGE 93

Query: 103 LISDDVGEQTEQALKNVGAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPA 162
           LISD+V +QTEQALKN+G IL+AGG  Y   +KTTIMLA++ DF  VN IY KYFP+ PA
Sbjct: 94  LISDNVEDQTEQALKNIGEILKAGGVSYSAAVKTTIMLADLGDFQKVNAIYAKYFPD-PA 153

Query: 163 PARSTFAAGALPKNAKIEIDAIAV 187
           PARSTF A  LP NAKIEID IAV
Sbjct: 154 PARSTFQAAGLPLNAKIEIDCIAV 173

[Close]

BLAST of CsGy3G005140 vs. TrEMBL
Match: tr|M1C0M0|M1C0M0_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102581296 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.6e-40
Identity = 92/144 (63.89%), Postives = 108/144 (75.00%), Query Frame = 0


Query: 43  SISSHQMSFKCHAISKCTTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQ 102
           S+++ ++ F C A  K       I+TD AP A+GPYSQGI ANN +YVSGSLGLIPETG 
Sbjct: 34  SVANSRVPFVCLASKK-----EEISTDKAPPAVGPYSQGIKANNFIYVSGSLGLIPETGV 93

Query: 103 LISDDVGEQTEQALKNVGAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPA 162
           LISD+V +QTEQALKN+G IL+AGG  Y   +KTTIMLA++ DF  VN IY KYFP+ PA
Sbjct: 94  LISDNVEDQTEQALKNIGEILKAGGVSYSAAVKTTIMLADLGDFQKVNAIYAKYFPD-PA 153

Query: 163 PARSTFAAGALPKNAKIEIDAIAV 187
           PARSTF A  LP NAKIEID IAV
Sbjct: 154 PARSTFQAAGLPLNAKIEIDCIAV 171

The following BLAST results are available for this feature:

BLAST of CsGy3G005140 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001267661.1	2.0e-96	100.00	chordin [Cucumis sativus] >ABA18632.1 plastid-lipid associated protein [Cucumis ...	[more]
KGN56122.1	3.2e-94	98.40	Plastid-lipid associated protein [Cucumis sativus]	[more]
XP_008463411.1	3.1e-89	93.58	PREDICTED: ribonuclease UK114-like [Cucumis melo]	[more]
XP_023552960.1	1.4e-70	76.47	2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985268.1	7.1e-70	75.94	2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita maxima]	[more]

BLAST of CsGy3G005140 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20390.1	8.4e-41	50.00	endoribonuclease L-PSP family protein	[more]
AT3G04480.1	8.2e-04	38.46	endoribonucleases	[more]

BLAST of CsGy3G005140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94JQ4\|RIDA_ARATH	1.5e-39	50.00	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q10121\|YSD2_CAEEL	1.8e-32	55.04	RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 ...	[more]
sp\|P52758\|RIDA_HUMAN	8.3e-30	49.59	2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=...	[more]
sp\|P52759\|RIDA_RAT	2.1e-28	49.59	2-iminobutanoate/2-iminopropanoate deaminase OS=Rattus norvegicus OX=10116 GN=Ri...	[more]
sp\|Q3T114\|RIDA_BOVIN	2.7e-28	47.11	2-iminobutanoate/2-iminopropanoate deaminase OS=Bos taurus OX=9913 GN=RIDA PE=2 ...	[more]

BLAST of CsGy3G005140 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0RZC7\|A0RZC7_CUCSA	1.3e-96	100.00	Plastid-lipid associated protein OS=Cucumis sativus OX=3659 GN=CHRD PE=2 SV=1	[more]
tr\|A0A0A0L6A5\|A0A0A0L6A5_CUCSA	2.1e-94	98.40	Plastid-lipid associated protein OS=Cucumis sativus OX=3659 GN=Csa_3G076580 PE=4...	[more]
tr\|A0A1S3CJ80\|A0A1S3CJ80_CUCME	2.0e-89	93.58	ribonuclease UK114-like OS=Cucumis melo OX=3656 GN=LOC103501582 PE=4 SV=1	[more]
tr\|A0RZD0\|A0RZD0_SOLLC	1.7e-40	63.89	Inducible plastid-lipid associated protein OS=Solanum lycopersicum OX=4081 GN=CH...	[more]
tr\|M1C0M0\|M1C0M0_SOLTU	6.6e-40	63.89	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102581296 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019897	RidA_CS
IPR006175	YjgF/YER057c/UK114
IPR006056	RidA
IPR035959	RutC-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G005140.1	CsGy3G005140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035959	RutC-like superfamily	GENE3D	G3DSA:3.30.1330.40		coord: 60..187 e-value: 5.0E-47 score: 161.0
IPR035959	RutC-like superfamily	SUPERFAMILY	SSF55298	YjgF-like	coord: 63..187
IPR006056	RidA family	TIGRFAM	TIGR00004	TIGR00004	coord: 66..186 e-value: 1.5E-44 score: 149.2
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 69..186 e-value: 3.3E-38 score: 130.3
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	TRANSLATION INITIATION INHIBITOR	coord: 66..186
None	No IPR available	PANTHER	PTHR11803:SF13	RIBONUCLEASE UK114	coord: 66..186
None	No IPR available	CDD	cd00448	YjgF_YER057c_UK114_family	coord: 78..185 e-value: 4.65673E-42 score: 138.075
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 163..181

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G005140	Cla005315	Watermelon (97103) v1	cgybwmB183
CsGy3G005140	Csa3G076580	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G005140	MELO3C025369	Melon (DHL92) v3.5.1	cgybmeB201
CsGy3G005140	ClCG10G005350	Watermelon (Charleston Gray)	cgybwcgB174
CsGy3G005140	CSPI03G05070	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G005140	CmaCh16G008660	Cucurbita maxima (Rimu)	cgybcmaB341
CsGy3G005140	CmaCh04G009580	Cucurbita maxima (Rimu)	cgybcmaB416
CsGy3G005140	CmoCh16G008950	Cucurbita moschata (Rifu)	cgybcmoB303
CsGy3G005140	Lsi05G005890	Bottle gourd (USVL1VR-Ls)	cgyblsiB183
CsGy3G005140	Cp4.1LG14g07300	Cucurbita pepo (Zucchini)	cgybcpeB326
CsGy3G005140	MELO3C025369.2	Melon (DHL92) v3.6.1	cgybmedB205
CsGy3G005140	CsaV3_3G005070	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G005140	Cla97C10G189600	Watermelon (97103) v2	cgybwmbB174
CsGy3G005140	Bhi11G000476	Wax gourd	cgybwgoB209
CsGy3G005140	Carg00072	Silver-seed gourd	carcgybB0662

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G005140	Cucurbita moschata (Rifu)	cgybcmoB393
CsGy3G005140	Cucurbita pepo (Zucchini)	cgybcpeB369
CsGy3G005140	Watermelon (Charleston Gray)	cgybwcgB198
CsGy3G005140	Silver-seed gourd	carcgybB0659