Cp4.1LG01g08100 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g08100
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	endoribonuclease L-PSP family protein
Location	Cp4.1LG01 : 5125359 .. 5128667 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAGATGCTAAAATTGGATGCTTTGGCATTAGGTATTTATTTATTACGTACTAAAAAGGAGACGTTTTTTGTGCATTGCAAAGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGCTGCTCAGTGCGAAGAGTGAGGAGGAAAGCAGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTTGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTACGCCCTCGTTTTTCTGCTTATTTCCGATCGATTCCTCTTTTTTCGTCGATCAATTTTCGCTATGGATTAGTGATTGCGGTTTTGTGTTGTCCTTGACTCTTGTTTTGTCGAAACCTCAATGGATTTTGTAGGGTTTAGTTTGTGTTTCAGCTCAGTTGTTATTAGAACTTTGAAATCTGAGCGTTCTTTGCGATTAGGTATAAGCTTGGTGATTATTCTATTCACAGCGTCAACTTAGATGGGAGGATCTTTTTGGTATCCCCCTTATGGAGAAGGGTCTCCTTGTCCCTTGGTCCGCTAGGCTGTTTTGGTCGCTTAGGCGTCTTTATTCAATGAGCGTGTTGAATTCTTTCCTAGTTGTAGATGAAATGCGGAAGATAATTCTTTGGCGGCTTTCTTTTTTATAGTTGTAGATGAAAATTCTTCCTTTCGGGAAGAATCAAATAATTTTTCTTTTCAAATTTTTTTTTATTCAGGATTATAACAGATGCATAACCACCCCTTAATATTAATTTCTTGTGTGGCAGGTATCAAGGAAGCTGTTAAGACTGACAAGGCACCAGCTGCATTAGGGCCATACTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTCTGAATCCGGAGGTAGTTTCATCACTTAATTATTGTTATTTTCTACTTGATTGTGCTTATGAGTTGATTAAGGGAATGTTTGGGAGTGGTTTTAAAAATGGCCAAAATCACTTATTTCATGCCGTTTTGAGTGGTACAAGATGATTTTGGCTATTCCAAAATCACTCCAATTCATTCCCTAAGTGGGTTTTTGGATGCCGACTTGGGCATAGCTTGGAAGGTCGAATATTTTAAAATATTGGCATGAAAAAAATAAAACAAAAATACAGAAGGATGGAGTGGGTTTCAGTGTGTGCGCATGTTCGTATTATTGTGCTGCCTAATAGAGTGTTTATCTTCATGTTCCAATACAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTAATGTTCATTTAGTAGGGTAGTTGCTCGTATCATGTCCATGTAAATTAAACTTTTGAGCTGGATATAAAAAATTATAAGTCAATGGAATTTGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTACGAACTTTTGGCCTCTTTTCTTTCTGATCATAATATCTTCTCTCTTTAATTTAAATAAGATCTGAATAACTAAGGAGTTGATGGTAATTGTTTTAAAACATGGTTTTCTGCTTTTGTATACTTTTAAGAACAATTTTTTGAGTGACTTATTAAAGTTAAGATAATTGTCCACAACAAACACTATTTACTAGTTATTCTGCTTGGTTCTATTTTCCATTTTTATGTTTATTCTATTTATCTAACCTTATGCCTTAACCCCGTACACTTTGTATTAAAAATCATTTGTCTTTTTCATTAGTTTTGCATAATTCATTTCAGAAACTTGACAAAGTATACCTTTTGCTAATTTACTTGATGAGTAGATTCACGAAAGTATTTAAAGCTAGATCAAGATGTAAGTCATCCTTTGAGTTCAAAATGGATAAGGCTTTCGTTAAATAAATTGTTATAATTAAATTTATAACAATTTAATCCTACGATGAAAATTTTCATAAAAACTAAGTGCCAGTTTTTATATGTAATGATTTAGACTTTCTAACTTATAAACACATTTGGTCTCTTTTTAGTTTTTTAATTTATATATGTAAGAAATTCCATTCCATCCTTAAAGTATTTTTCACAGTAAGGGACTAAATGGTCTCTTGAAAAACTTGACTAAACTATTCTAAGTTTTCAAGTATAGGGACTAATGGTTACATATATAAGTTGAGAGATTGAATTGTTTGAAACTAAACTGTTACAAACTAAAACATAGAGACTAAATTGTTACTTTTATTGAAGTTCAAGGACCAAAAGTGTTTTTAACATCCACTTAGTAATCTTTCTAGTATTGAAAGTGTCTTTCAGAACATTCCCATGTTTTTCCTGTGATTCAGTTCTTTCTTCGCAAATCTTTCCTGCAGGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATGTAAGTTTCGTTAAACTGAACCTCTAACCTCTGTCTTATCTAATACCGAGCATTTAATTTAGATATGCCTTTATGATCACTCTCTGTCCCCATTACAGTTCAACTTTAGTTTCTAGAATATAGTTATTTGAGTGAGTTCGAAAATTACAACTTGGATTAATTTTGTATATGATTCTACTTGGTGAAAAAGATGAACTTTTCTTTTTCGCGTTCTATCTGGCTGTGTGATATCTACTACTTGGTGGTCTGGTTATTTTGGGTCATGTTTCATTTACTGAAGGATAATTTATGTCCTGGTGAAGTTGTGATTCTATCTATGCTGCTTTGATATATTCTCTTGAGATAAGGATGCATTCTTCATTTTTACAGATTCAAAGCTCAAGTTGAGATTGTTTTCACATTGTTTTGTTTGCCACTTTTTATGCAGACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGAGATCTTACCTAGTTACAGGTACCCACCCAGCTTTGAAGACATCATAAATTAATAAGATGGAGATAGCAATCACGGGAACACCCCAAAATCCCATGTGGCTTTTGTATTCCCTGAGACTTTCTTCTTGTTACAGTAGAGTGTAACCGCTTGACGGTCAATGCTTTTTAGCAGTGAAACTTGAAGTTAGATGAAACATATTGATATTGTTGCCTTGAGTTTTGCAAAATAAGCATCCAACAGGTCAATAGATAAGAGTAGATAAAACCTTGGAATCCAC

mRNA sequence

TGTAGATGCTAAAATTGGATGCTTTGGCATTAGGTATTTATTTATTACGTACTAAAAAGGAGACGTTTTTTGTGCATTGCAAAGGCGTTTAATTCTCTAATCGTTATCGCCGAACAGTATCTGAGCTGCTCAGTGCGAAGAGTGAGGAGGAAAGCAGATCGGACAGAGATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTTGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCACCAGCTGCATTAGGGCCATACTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTCTGAATCCGGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGAGATCTTACCTAGTTACAGGTACCCACCCAGCTTTGAAGACATCATAAATTAATAAGATGGAGATAGCAATCACGGGAACACCCCAAAATCCCATGTGGCTTTTGTATTCCCTGAGACTTTCTTCTTGTTACAGTAGAGTGTAACCGCTTGACGGTCAATGCTTTTTAGCAGTGAAACTTGAAGTTAGATGAAACATATTGATATTGTTGCCTTGAGTTTTGCAAAATAAGCATCCAACAGGTCAATAGATAAGAGTAGATAAAACCTTGGAATCCAC

Coding sequence (CDS)

ATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTTGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCACCAGCTGCATTAGGGCCATACTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTCTGAATCCGGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

Protein sequence

MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYDFPSPAPARSTYQVAALPLDAKVEIECIATL

Homology

[Close]

BLAST of Cp4.1LG01g08100 vs. Swiss-Prot
Match: RIDA_ARATH (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 7.3e-63
Identity = 137/190 (72.11%), Postives = 155/190 (81.58%), Query Frame = 1


Query: 1   MAWCAARALHMPALDI-TALRS-KTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSI 60
           M W   R+++ P LD+ TALRS +TPL A GVGCA+ AG +L R SS   R  PFASLS+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSS---RSPPFASLSV 60

Query: 61  STDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 120
           S  +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ +E QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 121 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDA 180
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY   FP+P+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 181 KVEIECIATL 186
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

[Close]

BLAST of Cp4.1LG01g08100 vs. Swiss-Prot
Match: UK114_HUMAN (Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.1e-30
Identity = 62/123 (50.41%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 63  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 122
           I+  + T KAP A+GPYSQA+  +  +++SG +G++P +G+ VS  +  + +Q LKNMGE
Sbjct: 5   IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGE 64

Query: 123 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVEIE 182
           ILKA G  +++VVKTT++LAD+ DF  VNEIY   F S  PAR+ YQVAALP  +++EIE
Sbjct: 65  ILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIE 124

Query: 183 CIA 184
            +A
Sbjct: 125 AVA 127

[Close]

BLAST of Cp4.1LG01g08100 vs. Swiss-Prot
Match: UK114_MOUSE (Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-29
Identity = 63/123 (51.22%), Postives = 90/123 (73.17%), Query Frame = 1


Query: 63  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 122
           I++ + T KAPAA+GPYSQA++ +  +++SG +GL+P +G+ V   +  + +Q LKN+GE
Sbjct: 5   IRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGE 64

Query: 123 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVEIE 182
           ILKA G  +++VVKTT++LAD+ DF  VNEIY   F    PAR+ YQVAALP  ++VEIE
Sbjct: 65  ILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIE 124

Query: 183 CIA 184
            IA
Sbjct: 125 AIA 127

[Close]

BLAST of Cp4.1LG01g08100 vs. Swiss-Prot
Match: YSD2_CAEEL (RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-28
Identity = 64/122 (52.46%), Postives = 87/122 (71.31%), Query Frame = 1


Query: 64  KEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEI 123
           ++ + +  AP A+GPYSQA++A N +++SG LGL+P+TG      +E QT Q LKN+GE+
Sbjct: 41  RQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVE-QTHQSLKNLGEV 100

Query: 124 LKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVEIEC 183
           LKA GA Y +VVKTT++L ++ DF  VNE+Y   F SP PAR+ YQVAALP    VEIE 
Sbjct: 101 LKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEA 160

[Close]

BLAST of Cp4.1LG01g08100 vs. Swiss-Prot
Match: UK114_RAT (Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-28
Identity = 61/123 (49.59%), Postives = 88/123 (71.54%), Query Frame = 1


Query: 63  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 122
           I++ + T KAPAA+G YSQA+  +  ++VSG +G++P +G+ V   +  + +Q LKN+GE
Sbjct: 5   IRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGE 64

Query: 123 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVEIE 182
           ILKA G  +++VVKTT++LAD+ DF  VNEIY   F    PAR+ YQVAALP  +++EIE
Sbjct: 65  ILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIE 124

Query: 183 CIA 184
            IA
Sbjct: 125 AIA 127

[Close]

BLAST of Cp4.1LG01g08100 vs. TrEMBL
Match: A0A0A0L2Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077580 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 5.2e-84
Identity = 167/187 (89.30%), Postives = 174/187 (93.05%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAAR  HMPA D+TALRSK+PLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGG+ YSSVVKTTIMLADLKDFKKVNEIY   FPSPAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 181 IECIATL 186
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Cp4.1LG01g08100 vs. TrEMBL
Match: W9R0G1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 7.1e-73
Identity = 152/188 (80.85%), Postives = 165/188 (87.77%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSIST 60
           MAWCAAR  +MPA ++ ALR +TPL A GVGCAS+AG+TL RSSS SKR  PFA L IST
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSS-SKRSAPFACLGIST 60

Query: 61  DASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKN 120
           D+  KEAVKT+KAPAALGPYSQAIKANN L+VSGVLGL PETGKF+SD++E QTEQVLKN
Sbjct: 61  DSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 121 MGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKV 180
           MGEILKAGGA YSSVVKTTIMLADLKDFKKVNEIY   FPSPAPARSTYQVAALPLDAK+
Sbjct: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKI 180

Query: 181 EIECIATL 186
           EIECIA L
Sbjct: 181 EIECIAAL 187

[Close]

BLAST of Cp4.1LG01g08100 vs. TrEMBL
Match: A0A151U2B8_CAJCA (Ribonuclease UK114 family OS=Cajanus cajan GN=KK1_006029 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.3e-71
Identity = 144/186 (77.42%), Postives = 161/186 (86.56%), Query Frame = 1


Query: 2   AWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTDA 61
           +WC+AR  H+PA+D  A RS+  LA GVGC SVAGT+  RSSS+ KR +PF  LSIS+D 
Sbjct: 3   SWCSARCFHIPAMDAGAFRSRASLAAGVGCLSVAGTSFWRSSSSPKRSLPFTCLSISSDT 62

Query: 62  SIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMG 121
            IKE+V+T+ APAALGPYSQAIK+NNLLFVSGVLGL PETGKFVSD++E QTEQ+LKNMG
Sbjct: 63  RIKESVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDNVEDQTEQLLKNMG 122

Query: 122 EILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVEI 181
           EILKAGGA YSSVVKTTIMLADLKDFKKVNEIY   FPSP PARSTYQVAALPLDAK+EI
Sbjct: 123 EILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPFPARSTYQVAALPLDAKIEI 182

Query: 182 ECIATL 186
           ECIATL
Sbjct: 183 ECIATL 188

[Close]

BLAST of Cp4.1LG01g08100 vs. TrEMBL
Match: M5WJ62_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012000mg PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.3e-71
Identity = 146/187 (78.07%), Postives = 164/187 (87.70%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAAR+LH+P +D+ ALR++ PLAVGVG AS AG+TL RSS++SK    FA L+ISTD
Sbjct: 1   MAWCAARSLHLPTIDLGALRTRAPLAVGVGFASAAGSTLWRSSASSKPSSRFACLAISTD 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           A IKEAV TDKAPAALGPYSQAIKANN + VSGVLGL PETGKF+S+++E QTEQVLKNM
Sbjct: 61  ARIKEAVHTDKAPAALGPYSQAIKANNFVHVSGVLGLIPETGKFISENVEDQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVE 180
           GEILKA GA YSSVVKTTI+LADLKDFKKVNEIY   FPSPAPARST+QVAALPLDAK+E
Sbjct: 121 GEILKASGANYSSVVKTTILLADLKDFKKVNEIYAKYFPSPAPARSTFQVAALPLDAKIE 180

Query: 181 IECIATL 186
           IECIA L
Sbjct: 181 IECIAAL 187

[Close]

BLAST of Cp4.1LG01g08100 vs. TrEMBL
Match: D7T8C3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00390 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-70
Identity = 148/188 (78.72%), Postives = 164/188 (87.23%), Query Frame = 1


Query: 1   MAW-CAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSIST 60
           MAW  AAR  +MPA+D+ ALR + PLAVG+GCASVA T+L RSSS+S R  P A LSIST
Sbjct: 1   MAWSAAARTFNMPAIDVGALRRRGPLAVGIGCASVATTSLWRSSSSSLRSKPLACLSIST 60

Query: 61  DASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKN 120
           D SIK+AV+TDKAPAALGPYSQAIKANNL+FVSGVLGL PETGKF+SD++E QTEQVLKN
Sbjct: 61  DTSIKQAVQTDKAPAALGPYSQAIKANNLVFVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 121 MGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKV 180
           MGEILKA GA YSSVVKTTIMLADLKDFKKVNEIY   F +PAPARSTYQVAALPLDA++
Sbjct: 121 MGEILKASGASYSSVVKTTIMLADLKDFKKVNEIYAKYFHAPAPARSTYQVAALPLDARI 180

Query: 181 EIECIATL 186
           EIECIA L
Sbjct: 181 EIECIAAL 188

[Close]

BLAST of Cp4.1LG01g08100 vs. TAIR10
Match: AT3G20390.1 (AT3G20390.1 endoribonuclease L-PSP family protein)

HSP 1 Score: 241.5 bits (615), Expect = 4.1e-64
Identity = 137/190 (72.11%), Postives = 155/190 (81.58%), Query Frame = 1


Query: 1   MAWCAARALHMPALDI-TALRS-KTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSI 60
           M W   R+++ P LD+ TALRS +TPL A GVGCA+ AG +L R SS   R  PFASLS+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSS---RSPPFASLSV 60

Query: 61  STDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 120
           S  +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ +E QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 121 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDA 180
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY   FP+P+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 181 KVEIECIATL 186
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

[Close]

BLAST of Cp4.1LG01g08100 vs. NCBI nr
Match: gi|659126883|ref|XP_008463412.1| (PREDICTED: ribonuclease UK114-like [Cucumis melo])

HSP 1 Score: 321.6 bits (823), Expect = 8.8e-85
Identity = 169/187 (90.37%), Postives = 175/187 (93.58%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCA R+ HMPA D+TALRSKTPLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSD++E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIY   FPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 186
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Cp4.1LG01g08100 vs. NCBI nr
Match: gi|449470455|ref|XP_004152932.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus])

HSP 1 Score: 318.5 bits (815), Expect = 7.5e-84
Identity = 167/187 (89.30%), Postives = 174/187 (93.05%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAAR  HMPA D+TALRSK+PLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGG+ YSSVVKTTIMLADLKDFKKVNEIY   FPSPAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 181 IECIATL 186
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Cp4.1LG01g08100 vs. NCBI nr
Match: gi|1009110922|ref|XP_015898337.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 291.6 bits (745), Expect = 9.8e-76
Identity = 153/187 (81.82%), Postives = 167/187 (89.30%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAAR  ++PA+D+ ALR++ PLAVGVG ASVAG+ + RSSS+ KR  PFA L ISTD
Sbjct: 1   MAWCAARTFNVPAIDVGALRTRAPLAVGVGFASVAGSNIWRSSSSMKRSAPFACLGISTD 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
             IKEAVKTDKAPAALGPYSQAIKANN L+VSGVLGL PETGKFVSD++E QTEQVLKNM
Sbjct: 61  TRIKEAVKTDKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIY   FPSPAPARSTYQVAALPLDAK+E
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKIE 180

Query: 181 IECIATL 186
           IECIA+L
Sbjct: 181 IECIASL 187

[Close]

BLAST of Cp4.1LG01g08100 vs. NCBI nr
Match: gi|703083218|ref|XP_010092158.1| (hypothetical protein L484_017847 [Morus notabilis])

HSP 1 Score: 281.6 bits (719), Expect = 1.0e-72
Identity = 152/188 (80.85%), Postives = 165/188 (87.77%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSIST 60
           MAWCAAR  +MPA ++ ALR +TPL A GVGCAS+AG+TL RSSS SKR  PFA L IST
Sbjct: 1   MAWCAARTFNMPAAEMGALRGRTPLAAAGVGCASLAGSTLWRSSS-SKRSAPFACLGIST 60

Query: 61  DASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKN 120
           D+  KEAVKT+KAPAALGPYSQAIKANN L+VSGVLGL PETGKF+SD++E QTEQVLKN
Sbjct: 61  DSRSKEAVKTEKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFISDNVEDQTEQVLKN 120

Query: 121 MGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKV 180
           MGEILKAGGA YSSVVKTTIMLADLKDFKKVNEIY   FPSPAPARSTYQVAALPLDAK+
Sbjct: 121 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKI 180

Query: 181 EIECIATL 186
           EIECIA L
Sbjct: 181 EIECIAAL 187

[Close]

BLAST of Cp4.1LG01g08100 vs. NCBI nr
Match: gi|470116422|ref|XP_004294381.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 279.3 bits (713), Expect = 5.0e-72
Identity = 148/187 (79.14%), Postives = 162/187 (86.63%), Query Frame = 1


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAW AAR+ HMP +D+ ALR++ PLAVGVGCASVAG+ L RSS +SK    FA L+ STD
Sbjct: 1   MAWTAARSFHMPTIDMAALRTRAPLAVGVGCASVAGSGLWRSSISSKPSSRFACLATSTD 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
             IKEAVKTDKAPAALGPYSQAIKANN+L+VSG LGL PETGKFVSDD+EGQTEQVLKNM
Sbjct: 61  TRIKEAVKTDKAPAALGPYSQAIKANNVLYVSGCLGLIPETGKFVSDDVEGQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVE 180
           GEILKA GA YSSVVKTTI+LADLKDFK VNEIY   FPSPAPARST+QVAALPLDAK+E
Sbjct: 121 GEILKASGADYSSVVKTTILLADLKDFKAVNEIYAKYFPSPAPARSTFQVAALPLDAKIE 180

Query: 181 IECIATL 186
           IECIA L
Sbjct: 181 IECIAAL 187

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIDA_ARATH	7.3e-63	72.11	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA...	[more]
UK114_HUMAN	8.1e-30	50.41	Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1	[more]
UK114_MOUSE	1.1e-29	51.22	Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3	[more]
YSD2_CAEEL	1.2e-28	52.46	RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3	[more]
UK114_RAT	2.0e-28	49.59	Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3	[more]

BLAST of Cp4.1LG01g08100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2Z6_CUCSA	5.2e-84	89.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077580 PE=4 SV=1	[more]
W9R0G1_9ROSA	7.1e-73	80.85	Uncharacterized protein OS=Morus notabilis GN=L484_017847 PE=4 SV=1	[more]
A0A151U2B8_CAJCA	1.3e-71	77.42	Ribonuclease UK114 family OS=Cajanus cajan GN=KK1_006029 PE=4 SV=1	[more]
M5WJ62_PRUPE	1.3e-71	78.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012000mg PE=4 SV=1	[more]
D7T8C3_VITVI	1.1e-70	78.72	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00390 PE=4 SV=...	[more]

BLAST of Cp4.1LG01g08100 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20390.1	4.1e-64	72.11	endoribonuclease L-PSP family protein	[more]

BLAST of Cp4.1LG01g08100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126883\|ref\|XP_008463412.1\|	8.8e-85	90.37	PREDICTED: ribonuclease UK114-like [Cucumis melo]	[more]
gi\|449470455\|ref\|XP_004152932.1\|	7.5e-84	89.30	PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus]	[more]
gi\|1009110922\|ref\|XP_015898337.1\|	9.8e-76	81.82	PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Ziziphus jujuba]	[more]
gi\|703083218\|ref\|XP_010092158.1\|	1.0e-72	80.85	hypothetical protein L484_017847 [Morus notabilis]	[more]
gi\|470116422\|ref\|XP_004294381.1\|	5.0e-72	79.14	PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Fragaria vesca subs...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019897	RidA_CS
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like
IPR006175	YjgF/YER057c/UK114
IPR006056	RidA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009082	branched-chain amino acid biosynthetic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0019239	deaminase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g08100.1	Cp4.1LG01g08100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006056	RidA family	TIGRFAMs	TIGR00004	TIGR00004	coord: 64..184 score: 1.8
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	TRANSLATION INITIATION INHIBITOR	coord: 18..185 score: 1.7
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 70..184 score: 1.2
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	GENE3D	G3DSA:3.30.1330.40		coord: 64..184 score: 3.3
IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	unknown	SSF55298	YjgF-like	coord: 65..185 score: 7.38
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 161..179 scor
None	No IPR available	PANTHER	PTHR11803:SF13	RIBONUCLEASE UK114	coord: 18..185 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g08100	CmaCh04G009580	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g08100	CmoCh16G008950	Cucurbita moschata (Rifu)	cmocpeB317
Cp4.1LG01g08100	CmoCh04G010310	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g08100	MELO3C025369	Melon (DHL92) v3.5.1	cpemeB409
Cp4.1LG01g08100	Carg00072	Silver-seed gourd	carcpeB0938

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g08100	Cucurbita pepo (Zucchini)	cpecpeB007
Cp4.1LG01g08100	Cucumber (Gy14) v1	cgycpeB0077
Cp4.1LG01g08100	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g08100	Wild cucumber (PI 183967)	cpecpiB392
Cp4.1LG01g08100	Cucumber (Chinese Long) v2	cpecuB393
Cp4.1LG01g08100	Bottle gourd (USVL1VR-Ls)	cpelsiB370
Cp4.1LG01g08100	Watermelon (Charleston Gray)	cpewcgB349
Cp4.1LG01g08100	Watermelon (97103) v1	cpewmB386
Cp4.1LG01g08100	Melon (DHL92) v3.5.1	cpemeB413
Cp4.1LG01g08100	Cucumber (Gy14) v2	cgybcpeB369
Cp4.1LG01g08100	Melon (DHL92) v3.6.1	cpemedB484
Cp4.1LG01g08100	Cucumber (Chinese Long) v3	cpecucB0491
Cp4.1LG01g08100	Wax gourd	cpewgoB0484