CmoCh15G002320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G002320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein
Location	Cmo_Chr15 : 1153897 .. 1156335 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTCGAAGACTATGTCAATCCAAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGCTTCTTAAATGCAGTAAGCCCCATTTTTATTGTAATGTATATCAGGTTATTTTGCGATGTCACTCTCAAGTATGAAAATGTAACTATTTATGAATATATATGACAATGATTCTTTTTAATGTTAATGTTGGTGAAAATTTGAAGAAAGTTTTGAAAGTTTGAAACAAAATAAATTTTGATTACTGTACTTCTTCATATTTTTTCATCACAAAGTTGCAGAAAAAAATTCAATTATTGGTTTTGTTTTTCGAGGATTTGATAGAGACGATGAAAATCGGAACCTACAAATATTGGGAGGGGAATGTCCTGAATATTGATGCTACTTCCTTGTATGTCATATCATTGTGTTGTTTGTTTTCATTTGTGTCTTTCCATATATCCTATCGAAATTATTGCCTTTGATTTATAATGTGCACTAGCGTGGGTATATATATAACCCGCAACCCTCTTTATGGAAAAGCACTCGTAATTTGTTTCGAGTTTCACAAGTGTTTAGCTGTAGTTTGTAACATTATTCTCAAGATAATTGTATGACTCTATTTTCCCCTCTTAATTTCTGTAGTACACATTGGTTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACACCTATGAGTTCTACAGCATCAACCGATAACTGTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCCAGGCGAGAGAAGGGGTCAAGCCATTTACAAGAGGAGTCGGAGCCTTTAAGAGGTGATGTGGATACAGATTCAGATTCTTTGGGCTCATCTGGCAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAATTCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGATGTTGGGTATGCTTATACATCCTCTGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGGTTGGTTTATTTATTGAGCTTCATTTTATCATGGATCTTATTTTCTTGCTCATAATAATCTATGGTTTTGGCCCTCAATATTCTTGTTTGTTGAGCTTCTGGGTGACAAACAAGTTACTGATCCACACATTTTTTAACGTTCCAAAATTTTGTTCTGCTCATTTAATTTTCTTCTTTTCCCTGGCAGAATATACTTCCGAGAATCCCAAGATAGTGACGAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTATGGTTCCTTGTATCCATCGGATCATGTAAACTTGTTCAATCACTATTTGAAAGCGACCCTATTCATTGTGTTCGAGTGTCTGACTCAAATTGATGTTTGGATCTGTTTATGTTCTGGAAGTTATGTGTTTCACAAGTGTTCCTATTCACAAGTAAATCAGATTGATGGTACTTTAGTGATCCCAAATCACATTATGATGGTATCTTGAAGGATGTCCGCCTGATTCATGTTGTGTATGAAACTTATGACCATCGCTTGGCTATGATATTTGACAGTTAGGAAACTGGTGGAATGTTGATATTTGACAGTTAGAAAACTGGTGGAATGTTGACAGGACAAATTTTAAATAGGATGCGAAGCTATTGTTAGCTTGATCTGTTTATAAAACAAAATTAAACGTCGGTCCCTAAGGAGTTTAACATGGTCGAATTCTGCAGAGACGGTATTCCTTTTTAGGCTGAATTCTGATTCTAGTGATGAGCTTGGTTAACATTAGAGATTAGATTATGTGATTTGTAAACTGGAAAGGAAACAAACCTTAAGATGTCTGATTCTATTTTAATGTCTTAGGTTATGGCGTTCGATGAAACAACTTGATGTGCGGACGAAGGCAGCAGCAACATCTTGGGCATAACCAACAGCAACATGGTCATTTGTGAATATTGCAGGATAAGATTTTTCTATGATGGTAAATATTATGAATCAAAGTATAACAAAGGTTGTGTCCTCATTTTCAAAGATTATTTCTAAGTTATACAGTTGAATTGATGTTTCACCAAAATATCATCCTATAGGGGAAGAACAATAGGTGTTGTGAATGACTGAAACCTTTCCATTCCATGTTTGGTGTATCCATCTGTTTTCTTTCTTCTCTTGGAAGTGAAATAGGCTCTCACCTTTCAATCATCTCTTCTTCTCAAAGAAACAAAAAGAAATGAGCCAAGATTATGGGAAGTTCATTTTTAGATAACCTGGAGTGAGGAATACTATGAAAGATTATGACTATGGTTGTATGTGAAGTTGGATGCTAAAAAAGTGTGGAC

mRNA sequence

ATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTCGAAGACTATGTCAATCCAAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGCTTCTTAAATGCATACACATTGGTTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACACCTATGAGTTCTACAGCATCAACCGATAACTGTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCCAGGCGAGAGAAGGGGTCAAGCCATTTACAAGAGGAGTCGGAGCCTTTAAGAGGTGATGTGGATACAGATTCAGATTCTTTGGGCTCATCTGGCAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAATTCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGATGTTGGGTATGCTTATACATCCTCTGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCCGAGAATCCCAAGATAGTGACGAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTTATGGCGTTCGATGAAACAACTTGATGTGCGGACGAAGGCAGCAGCAACATCTTGGGCATAACCAACAGCAACATGGTCATTTGTGAATATTGCAGGATAAGATTTTTCTATGATGGTAAATATTATGAATCAAAGTATAACAAAGGTTGTGTCCTCATTTTCAAAGATTATTTCTAAGTTATACAGTTGAATTGATGTTTCACCAAAATATCATCCTATAGGGGAAGAACAATAGGTGTTGTGAATGACTGAAACCTTTCCATTCCATGTTTGGTGTATCCATCTGTTTTCTTTCTTCTCTTGGAAGTGAAATAGGCTCTCACCTTTCAATCATCTCTTCTTCTCAAAGAAACAAAAAGAAATGAGCCAAGATTATGGGAAGTTCATTTTTAGATAACCTGGAGTGAGGAATACTATGAAAGATTATGACTATGGTTGTATGTGAAGTTGGATGCTAAAAAAGTGTGGAC

Coding sequence (CDS)

ATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTCGAAGACTATGTCAATCCAAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGCTTCTTAAATGCATACACATTGGTTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACACCTATGAGTTCTACAGCATCAACCGATAACTGTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCCAGGCGAGAGAAGGGGTCAAGCCATTTACAAGAGGAGTCGGAGCCTTTAAGAGGTGATGTGGATACAGATTCAGATTCTTTGGGCTCATCTGGCAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAATTCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGATGTTGGGTATGCTTATACATCCTCTGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCCGAGAATCCCAAGATAGTGACGAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTTATGGCGTTCGATGAAACAACTTGA

Homology

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BLAST of CmoCh15G002320 vs. Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 6.6e-74
Identity = 143/234 (61.11%), Postives = 166/234 (70.94%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MG V  C  VED ++Y+NPNSSVYRNC C+ C   +FLN Y  VFRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
             ++S++S DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH  EE EPLR 
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 DVDTDSDSLGSSG-KW-NGSACL---EESKEILGKSSLKFPSTKSTT---DVGYAYTSSE 180
           D D DS+S G  G KW N  + L   +  +E   KSSL+   ++S +   D    Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDET 227
           DEDVCPTCLEEYTSENPKIVTKCSHHFHL CIYEWMERS+NCPVCGKVM F+ET
Sbjct: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230

[Close]

BLAST of CmoCh15G002320 vs. Swiss-Prot
Match: RHB1A_ARATH (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana GN=RHB1A PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.4e-15
Identity = 49/146 (33.56%), Postives = 70/146 (47.95%), Query Frame = 1


Query: 81  PRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRGDVDTDS-DSLGSSGKWNGSA 140
           P PLPYD            L+ R +        +SE ++G +   S ++L +      S 
Sbjct: 63  PAPLPYDL-----------LLGRPQC------TDSESIKGRMSGSSFETLATCEDLGESD 122

Query: 141 CLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHF 200
           C    K +     L    +  +   G      E+ED CP C E+Y  ENP++ TKC H F
Sbjct: 123 C----KTLASSVILSPRKSDFSKHQGLKILVDEEEDCCPICFEDYDVENPRLTTKCEHEF 182

Query: 201 HLGCIYEWMERSDNCPVCGKVMAFDE 226
           HL C+ EW+ERSD CP+C K + FD+
Sbjct: 183 HLSCLLEWIERSDRCPICDKEVVFDD 187

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BLAST of CmoCh15G002320 vs. Swiss-Prot
Match: RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 1


Query: 157 STKSTTDVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPV 216
           S+ S+  V  +   +  +D C  CLE +T ++P  VT C H +HL CI EW +RS  CP+
Sbjct: 26  SSSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPI 85

Query: 217 C 218
           C
Sbjct: 86  C 86

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BLAST of CmoCh15G002320 vs. Swiss-Prot
Match: PHRF1_HUMAN (PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06
Identity = 34/116 (29.31%), Postives = 56/116 (48.28%), Query Frame = 1


Query: 112 QEESEPLRGDVDTDSDSL---GSSGKWNGSACLE--------ESKEILGKSSLKFPSTKS 171
           +E S    GD   DSDS    G+ G+  G++  E        E  E  G++ L+   T+ 
Sbjct: 32  EESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSEDDGETLLEVAGTQG 91

Query: 172 TTDVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPV 217
             +   ++ S +D + CP CL  +  +       C+H+F L CI EW + +++CPV
Sbjct: 92  KLEAAGSFNSDDDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPV 147

[Close]

BLAST of CmoCh15G002320 vs. Swiss-Prot
Match: ATL54_ARATH (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 5.9e-06
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 1


Query: 177 CPTCLEEYTS-ENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           CP CL E+   E+ +++ KC+H FH+ CI  W+    NCP+C   +A    T
Sbjct: 177 CPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVT 228

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BLAST of CmoCh15G002320 vs. TrEMBL
Match: A0A0A0KSH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G642120 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 6.5e-121
Identity = 213/227 (93.83%), Postives = 218/227 (96.04%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTL+FRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
           T M+STASTDN LSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHL EESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180
           +VDTDSDSLGS GK NGSACLEESKE LGKSSLKFPSTKST+ +GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK MAFDETT
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAFDETT 227

[Close]

BLAST of CmoCh15G002320 vs. TrEMBL
Match: M5WZ55_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011007mg PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.7e-100
Identity = 175/227 (77.09%), Postives = 194/227 (85.46%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MG+VCCCL+ EDFEDYVNPNSS YRNC CLSCFI++FLN YT +FRRGEVHS+ SSIQGA
Sbjct: 1   MGSVCCCLNAEDFEDYVNPNSSAYRNCICLSCFIENFLNVYTSLFRRGEVHSIPSSIQGA 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
             M+S+AS DN +S+MYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSH  EE+EPLR 
Sbjct: 61  ASMTSSASLDNSISDMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHSHEEAEPLRS 120

Query: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180
           D D DS+ L +  KWNGSAC +  KE   KSS+KF S K+TT VG  Y SSEDEDVCPTC
Sbjct: 121 DTDADSECLSTGEKWNGSACEDGVKEHRSKSSMKFSSAKATTIVGNFYISSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           LEEYT ENPKI+TKCSHHFHLGCIYEWMERS++CPVCGKVM FDETT
Sbjct: 181 LEEYTPENPKIMTKCSHHFHLGCIYEWMERSESCPVCGKVMVFDETT 227

[Close]

BLAST of CmoCh15G002320 vs. TrEMBL
Match: A0A067JND7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25599 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.9e-99
Identity = 173/227 (76.21%), Postives = 191/227 (84.14%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MG+VCCCL  EDFEDY+NPNSS YRNC CLSCF+Q+FL+ Y+ +FRRGEVHSV SSIQGA
Sbjct: 1   MGSVCCCLHAEDFEDYMNPNSSAYRNCMCLSCFLQNFLHLYSSLFRRGEVHSVPSSIQGA 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
             M+S++S DN LS+MYRSPPRPLPYDADPRY RLQRDGL+SRREKGSSH  EESEPLR 
Sbjct: 61  ASMTSSSSLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHAHEESEPLRS 120

Query: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180
           D D DSDSL +  KW  SAC E SKE   +SSLK  S K+T  +GY Y+SSEDEDVCPTC
Sbjct: 121 DNDGDSDSLSTGDKWTASACEEGSKEQRARSSLKLSSAKATVGIGYIYSSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           LEEYT ENPKIVTKCSHHFHLGCIYEWMERSD+CPVCGK M FDETT
Sbjct: 181 LEEYTPENPKIVTKCSHHFHLGCIYEWMERSDSCPVCGKAMVFDETT 227

[Close]

BLAST of CmoCh15G002320 vs. TrEMBL
Match: I1KWJ4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G251300 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 3.5e-98
Identity = 171/227 (75.33%), Postives = 193/227 (85.02%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MGAVCCC +V+DFEDY+NPNSSVYRNC CLSCF+Q+FL  Y  +FRRGEVH++ SSIQGA
Sbjct: 1   MGAVCCCFNVDDFEDYMNPNSSVYRNCMCLSCFVQNFLTVYESIFRRGEVHAIPSSIQGA 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
             M+STAS DN LS+MYRSPPRPLPYDADPR+ R QR+GL+SRREKGSSHL EESEPLRG
Sbjct: 61  ASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFRSQREGLVSRREKGSSHLNEESEPLRG 120

Query: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180
           DVD DS+SL S GKWN ++  + SKE   KSS++  S K TT  G  Y+SSE+EDVCPTC
Sbjct: 121 DVDADSESLNSGGKWNDTS-EDGSKEYRSKSSVRLSSAKLTTGAGVVYSSSEEEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           LEEYT ENPKIVTKCSHHFHLGCIYEWMERSD+CPVCGKVM FDETT
Sbjct: 181 LEEYTEENPKIVTKCSHHFHLGCIYEWMERSDSCPVCGKVMVFDETT 226

[Close]

BLAST of CmoCh15G002320 vs. TrEMBL
Match: A0A0B2REM2_GLYSO (E3 ubiquitin-protein ligase OS=Glycine soja GN=glysoja_037819 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 3.5e-98
Identity = 171/227 (75.33%), Postives = 193/227 (85.02%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MGAVCCC +V+DFEDY+NPNSSVYRNC CLSCF+Q+FL  Y  +FRRGEVH++ SSIQGA
Sbjct: 1   MGAVCCCFNVDDFEDYMNPNSSVYRNCMCLSCFVQNFLTVYESIFRRGEVHAIPSSIQGA 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
             M+STAS DN LS+MYRSPPRPLPYDADPR+ R QR+GL+SRREKGSSHL EESEPLRG
Sbjct: 61  ASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFRSQREGLVSRREKGSSHLNEESEPLRG 120

Query: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180
           DVD DS+SL S GKWN ++  + SKE   KSS++  S K TT  G  Y+SSE+EDVCPTC
Sbjct: 121 DVDADSESLNSGGKWNDTS-EDGSKEYRSKSSVRLSSAKLTTGAGVVYSSSEEEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           LEEYT ENPKIVTKCSHHFHLGCIYEWMERSD+CPVCGKVM FDETT
Sbjct: 181 LEEYTEENPKIVTKCSHHFHLGCIYEWMERSDSCPVCGKVMVFDETT 226

[Close]

BLAST of CmoCh15G002320 vs. TAIR10
Match: AT3G02290.1 (AT3G02290.1 RING/U-box superfamily protein)

HSP 1 Score: 278.5 bits (711), Expect = 3.7e-75
Identity = 143/234 (61.11%), Postives = 166/234 (70.94%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MG V  C  VED ++Y+NPNSSVYRNC C+ C   +FLN Y  VFRRGE  S+ SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
             ++S++S DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH  EE EPLR 
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 DVDTDSDSLGSSG-KW-NGSACL---EESKEILGKSSLKFPSTKSTT---DVGYAYTSSE 180
           D D DS+S G  G KW N  + L   +  +E   KSSL+   ++S +   D    Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDET 227
           DEDVCPTCLEEYTSENPKIVTKCSHHFHL CIYEWMERS+NCPVCGKVM F+ET
Sbjct: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230

[Close]

BLAST of CmoCh15G002320 vs. TAIR10
Match: AT5G38895.3 (AT5G38895.3 RING/U-box superfamily protein)

HSP 1 Score: 275.0 bits (702), Expect = 4.1e-74
Identity = 129/226 (57.08%), Postives = 161/226 (71.24%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MGA CCC  V+ FE YVNPN+S+ RNC CL+CF+QSF++ Y  +F RG +H + S+++ A
Sbjct: 106 MGAFCCCFQVDLFESYVNPNTSITRNCPCLNCFLQSFMDLYASLFSRGGMHPIPSTVETA 165

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
           T M+ST + D+ LS +Y SPP PLPYDADPRY R           KGSSH  EESEPLRG
Sbjct: 166 TVMNSTTALDDSLSSVYHSPPTPLPYDADPRYFRFV---------KGSSHSGEESEPLRG 225

Query: 121 DVDTDSDSLGSSG-KWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPT 180
           D +  S++LG  G KW+ S   + SKE+  K S  F  +K+   +   Y  S+DED+CPT
Sbjct: 226 DTEMSSEALGDGGAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYYADSDDEDICPT 285

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDE 226
           CL++YT ENPKI+TKCSHHFHL CIYEWMERS+ CPVCGKVMAFDE
Sbjct: 286 CLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAFDE 322

[Close]

BLAST of CmoCh15G002320 vs. TAIR10
Match: AT5G15790.1 (AT5G15790.1 RING/U-box superfamily protein)

HSP 1 Score: 269.6 bits (688), Expect = 1.7e-72
Identity = 140/233 (60.09%), Postives = 165/233 (70.82%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MG V  C  V+DFEDY NP+SSV R+C C  C + +FLN Y  +FRRGE  S+ SS+Q A
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQ-A 60

Query: 61  TPMSSTAST--DNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPL 120
           T +S   ST  DN +S  + S PRPLPYDADPRY R +RD L+SRR+KGSSH  EE+EPL
Sbjct: 61  TNVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPL 120

Query: 121 RGDVDTDSDSLGSSG-KWNGSACL--EESKEILGKSSLKF--PSTKSTTDVGYAYTSSED 180
           R D D DS+S    G KW     +  E+SKE   +SS +     T ST++ G  Y +S+D
Sbjct: 121 RSDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGL-YITSDD 180

Query: 181 EDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDET 227
           EDVCPTCLEEY SENPKIVTKCSHHFHL CIYEWMERS+NCPVCGKVM F ET
Sbjct: 181 EDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFHET 231

[Close]

BLAST of CmoCh15G002320 vs. TAIR10
Match: AT5G41350.1 (AT5G41350.1 RING/U-box superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-20
Identity = 72/235 (30.64%), Postives = 96/235 (40.85%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MG  CCC S    +    P    Y   T     + S  N  +     G V  V ++++ +
Sbjct: 1   MGGCCCCSSSRRADVDNGPAYYYYPRATEERVPLSSAHNRTSSAISTGVV-VVDTNLETS 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGL---------ISRREKGSSHL 120
           +P            + Y  PP P P+D      +    G          +S     +   
Sbjct: 61  SP------------DAYIPPPLPTPFDVPIGIPQTPASGEEATCVDIREVSVDSANTESA 120

Query: 121 QEESEPLRGDVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSS 180
           QE  + +   V T      +  K      LE ++EI  K S               +   
Sbjct: 121 QETVDGITLGVPTTCSHKETDSKIQTEIDLESTEEIDPKLSKA------------VFIPI 180

Query: 181 EDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDET 227
           E+E+ CP CLEEY  ENPK+V KC HHFHL CI EWMERS+ CPVC K M FD T
Sbjct: 181 EEEEDCPICLEEYDIENPKLVAKCDHHFHLACILEWMERSETCPVCNKEMVFDST 210

[Close]

BLAST of CmoCh15G002320 vs. TAIR10
Match: AT4G00335.1 (AT4G00335.1 RING-H2 finger B1A)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 49/146 (33.56%), Postives = 70/146 (47.95%), Query Frame = 1


Query: 81  PRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRGDVDTDS-DSLGSSGKWNGSA 140
           P PLPYD            L+ R +        +SE ++G +   S ++L +      S 
Sbjct: 63  PAPLPYDL-----------LLGRPQC------TDSESIKGRMSGSSFETLATCEDLGESD 122

Query: 141 CLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHF 200
           C    K +     L    +  +   G      E+ED CP C E+Y  ENP++ TKC H F
Sbjct: 123 C----KTLASSVILSPRKSDFSKHQGLKILVDEEEDCCPICFEDYDVENPRLTTKCEHEF 182

Query: 201 HLGCIYEWMERSDNCPVCGKVMAFDE 226
           HL C+ EW+ERSD CP+C K + FD+
Sbjct: 183 HLSCLLEWIERSDRCPICDKEVVFDD 187

[Close]

BLAST of CmoCh15G002320 vs. NCBI nr
Match: gi|659118970|ref|XP_008459404.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo])

HSP 1 Score: 447.2 bits (1149), Expect = 1.7e-122
Identity = 214/227 (94.27%), Postives = 220/227 (96.92%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTL+FRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
           T M+STASTDN LSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHL EESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180
           +VDTDSDSLGS+GKWNGSACLEESKE LGKSSLKFPSTKST+ +GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK MAFDETT
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAFDETT 227

[Close]

BLAST of CmoCh15G002320 vs. NCBI nr
Match: gi|449447440|ref|XP_004141476.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis sativus])

HSP 1 Score: 441.4 bits (1134), Expect = 9.4e-121
Identity = 213/227 (93.83%), Postives = 218/227 (96.04%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTL+FRRGEVHSVSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
           T M+STASTDN LSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHL EESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180
           +VDTDSDSLGS GK NGSACLEESKE LGKSSLKFPSTKST+ +GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK MAFDETT
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAFDETT 227

[Close]

BLAST of CmoCh15G002320 vs. NCBI nr
Match: gi|658013032|ref|XP_008341811.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Malus domestica])

HSP 1 Score: 375.9 bits (964), Expect = 4.8e-101
Identity = 174/227 (76.65%), Postives = 196/227 (86.34%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MG+VCCCL+ EDFEDYVNPNSS YR+C CL+CF+Q+FLN YT +FRRGEVHS+ SSIQGA
Sbjct: 1   MGSVCCCLNSEDFEDYVNPNSSAYRDCACLNCFLQNFLNVYTSLFRRGEVHSIPSSIQGA 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
             M+S+AS DN LS+MYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSH  EE+EPLR 
Sbjct: 61  ASMNSSASLDNSLSDMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHSHEEAEPLRS 120

Query: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180
           D D DS+SL +  KWNGS C + SKE   KSS+KF S K+TT +G  Y+SSEDEDVCPTC
Sbjct: 121 DTDADSESLSTGEKWNGSTCEDGSKEHRSKSSMKFSSAKATTGIGNFYSSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           LEEYT ENPKI+TKCSHHFHLGCIYEWMERS++CPVCGKVM FDETT
Sbjct: 181 LEEYTHENPKIITKCSHHFHLGCIYEWMERSESCPVCGKVMVFDETT 227

[Close]

BLAST of CmoCh15G002320 vs. NCBI nr
Match: gi|1009127428|ref|XP_015880691.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 374.0 bits (959), Expect = 1.8e-100
Identity = 176/227 (77.53%), Postives = 196/227 (86.34%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MG+VCCCL+V+DFEDY+NPNSSVYRNC CLSCFIQ+ LN Y  +F+RGEVHS+ SS+QGA
Sbjct: 1   MGSVCCCLNVQDFEDYMNPNSSVYRNCICLSCFIQNVLNVYASIFQRGEVHSLPSSVQGA 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
             MSSTAS DN L++MYRSPPRPLPYDADPRY RLQRDGLISRREKGSSH  EESEPLRG
Sbjct: 61  ASMSSTASYDNSLADMYRSPPRPLPYDADPRYFRLQRDGLISRREKGSSHSHEESEPLRG 120

Query: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180
           DVD +++SL +  KWN SAC + SKE   KSS+KF S K+TT V   YTSSEDEDVCPTC
Sbjct: 121 DVDAENESLSTGDKWNESACEDGSKEQRSKSSIKFSSAKTTTGVINFYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           LEEYT ENPKIVTKCSHHFHLGCIYEWMERS++CPVCGKVM FDETT
Sbjct: 181 LEEYTQENPKIVTKCSHHFHLGCIYEWMERSESCPVCGKVMVFDETT 227

[Close]

BLAST of CmoCh15G002320 vs. NCBI nr
Match: gi|595974170|ref|XP_007217755.1| (hypothetical protein PRUPE_ppa011007mg [Prunus persica])

HSP 1 Score: 373.6 bits (958), Expect = 2.4e-100
Identity = 175/227 (77.09%), Postives = 194/227 (85.46%), Query Frame = 1


Query: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGA 60
           MG+VCCCL+ EDFEDYVNPNSS YRNC CLSCFI++FLN YT +FRRGEVHS+ SSIQGA
Sbjct: 1   MGSVCCCLNAEDFEDYVNPNSSAYRNCICLSCFIENFLNVYTSLFRRGEVHSIPSSIQGA 60

Query: 61  TPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRG 120
             M+S+AS DN +S+MYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSH  EE+EPLR 
Sbjct: 61  ASMTSSASLDNSISDMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHSHEEAEPLRS 120

Query: 121 DVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTC 180
           D D DS+ L +  KWNGSAC +  KE   KSS+KF S K+TT VG  Y SSEDEDVCPTC
Sbjct: 121 DTDADSECLSTGEKWNGSACEDGVKEHRSKSSMKFSSAKATTIVGNFYISSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
           LEEYT ENPKI+TKCSHHFHLGCIYEWMERS++CPVCGKVM FDETT
Sbjct: 181 LEEYTPENPKIMTKCSHHFHLGCIYEWMERSESCPVCGKVMVFDETT 227

The following BLAST results are available for this feature:

BLAST of CmoCh15G002320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RING3_ARATH	6.6e-74	61.11	E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 ...	[more]
RHB1A_ARATH	2.4e-15	33.56	Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana GN=RHB1A PE=2...	[more]
RHF1A_ARATH	4.3e-09	40.98	E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1	[more]
PHRF1_HUMAN	1.5e-06	29.31	PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV...	[more]
ATL54_ARATH	5.9e-06	38.46	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2	[more]

BLAST of CmoCh15G002320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSH8_CUCSA	6.5e-121	93.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G642120 PE=4 SV=1	[more]
M5WZ55_PRUPE	1.7e-100	77.09	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011007mg PE=4 SV=1	[more]
A0A067JND7_JATCU	1.9e-99	76.21	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25599 PE=4 SV=1	[more]
I1KWJ4_SOYBN	3.5e-98	75.33	Uncharacterized protein OS=Glycine max GN=GLYMA_08G251300 PE=4 SV=1	[more]
A0A0B2REM2_GLYSO	3.5e-98	75.33	E3 ubiquitin-protein ligase OS=Glycine soja GN=glysoja_037819 PE=4 SV=1	[more]

BLAST of CmoCh15G002320 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02290.1	3.7e-75	61.11	RING/U-box superfamily protein	[more]
AT5G38895.3	4.1e-74	57.08	RING/U-box superfamily protein	[more]
AT5G15790.1	1.7e-72	60.09	RING/U-box superfamily protein	[more]
AT5G41350.1	2.0e-20	30.64	RING/U-box superfamily protein	[more]
AT4G00335.1	1.3e-16	33.56	RING-H2 finger B1A	[more]

BLAST of CmoCh15G002320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118970\|ref\|XP_008459404.1\|	1.7e-122	94.27	PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo]	[more]
gi\|449447440\|ref\|XP_004141476.1\|	9.4e-121	93.83	PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis sativus]	[more]
gi\|658013032\|ref\|XP_008341811.1\|	4.8e-101	76.65	PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Malus domestica]	[more]
gi\|1009127428\|ref\|XP_015880691.1\|	1.8e-100	77.53	PREDICTED: E3 ubiquitin-protein ligase At3g02290 isoform X2 [Ziziphus jujuba]	[more]
gi\|595974170\|ref\|XP_007217755.1\|	2.4e-100	77.09	hypothetical protein PRUPE_ppa011007mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR024766	Znf_RING_H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G002320.1	CmoCh15G002320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 177..217 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 177..217 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 172..224 score: 3.4
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 174..217 score: 1.8
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 1..227 score: 1.8E
None	No IPR available	PANTHER	PTHR22763:SF34	SUBFAMILY NOT NAMED	coord: 1..227 score: 1.8E
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 171..223 score: 1.65

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G002320	Cucsa.238510	Cucumber (Gy14) v1	cgycmoB0660
CmoCh15G002320	CmaCh15G002210	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G002320	CmaCh04G028130	Cucurbita maxima (Rimu)	cmacmoB692
CmoCh15G002320	Cla016502	Watermelon (97103) v1	cmowmB275
CmoCh15G002320	Csa5G642120	Cucumber (Chinese Long) v2	cmocuB287
CmoCh15G002320	MELO3C022050	Melon (DHL92) v3.5.1	cmomeB239
CmoCh15G002320	ClCG11G004970	Watermelon (Charleston Gray)	cmowcgB240
CmoCh15G002320	CSPI05G29560	Wild cucumber (PI 183967)	cmocpiB296
CmoCh15G002320	Lsi03G001880	Bottle gourd (USVL1VR-Ls)	cmolsiB265
CmoCh15G002320	Cp4.1LG13g08020	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G002320	Cp4.1LG01g22390	Cucurbita pepo (Zucchini)	cmocpeB279
CmoCh15G002320	MELO3C022050.2	Melon (DHL92) v3.6.1	cmomedB271
CmoCh15G002320	CsaV3_5G038700	Cucumber (Chinese Long) v3	cmocucB0348
CmoCh15G002320	Cla97C11G211760	Watermelon (97103) v2	cmowmbB278
CmoCh15G002320	Bhi06G000258	Wax gourd	cmowgoB0374
CmoCh15G002320	CsGy5G029000	Cucumber (Gy14) v2	cgybcmoB584
CmoCh15G002320	Carg02207	Silver-seed gourd	carcmoB0362
CmoCh15G002320	Carg05897	Silver-seed gourd	carcmoB0031

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G002320	CmoCh04G029440	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G002320	Cucumber (Chinese Long) v3	cmocucB0354
CmoCh15G002320	Wax gourd	cmowgoB0380
CmoCh15G002320	Melon (DHL92) v3.5.1	cmomeB253