Carg05897 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05897
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase At3g02290
Location	Cucurbita_argyrosperma_scaffold_026 : 128583 .. 131572 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGTATATTCTCGCGATTTCCGTCTTCCAGGTTTCTCTGTCCTCCACCCACCCACCCACCCACCCACCGAAGATCGTATTATCTTTCGGTCTTCTCTTCTCCCTCCACTTTACTGCTCTTTCAAGGTGCGCTTCTATTTTTCTCCTTTTTCGTATGAATAGTTCAAGGGCATCCCGATGATCGCCCCAAATTTGTATTGTTCTGTATTGGGATTCTCAGTTTTTTTTCATGATTTGTACGTATTCATGGTCCGATCGTCCATTTTTTGAGTTTTTTCTTGTGGGATTGTCGTATAATTTCAATAGTTTTTGATGCTCATGATCAACTTGGTATGCTATTGATGTTGTCAAGGTATCTTGTTTCCTCCTCATCGAAGGAAAGAACATGTGTTTTCAGAGGTCACCCAGAAAAAAAAATCTCAATTTCTTTAGACGAGCGGTAATTTTGACGAAGATTATGGCATTTTATTAACCCTTTGATTGATTTCTGGCTGTTTCAACAAATTTTTGTTTCATTATTGTGATGATTGCAGCAAAGGATTGCTGCCGACAGATTTATGTTCCTTGAAATAATGCCGATTGTTGGTTTAATGAACGATCTTAGTAGAATTTTTTTGATTTGACTTGCTTTCTTGGCGATCGCATAGGCATTTATGCATCATAGTTGGTTTAAGGATAATCCCATGGGATCCTCATTTGATTATCAGTGTTACTGAACTGTGGCTGCTTATTTTACAGGTGAAAATCACAGTTTGAAAATCCAGTTTATTCAAATTGAAGAGGGAGGGTACTAGTTCGTGGAGGAAATAGTACTTCTGCGGGCTTATGTACTCTCGTATCCATTTGCCAACATAATCATTGGCCAATAATTTTGAACTTGAATGCAAGTGAATAGCTGAATTGATCTATCTGTTGACTTGGGAATCTGCTGGATTAGATAATCGAGAATTTTAAGAGATTTGTGGGCGTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCATGGACGATTTTGAAGACTATGTCAATCCTAATAGTTCGGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAACGCCGTAAGCCCTATTTTCGTTGCATTTTTTGCGATTGTGTCACTGTGAAGGATGAAAATTTCGTTATTTCATAAATAACGTGTTTTGTTCGAATGCTAATAATGGTGAAAATTCGAAGAAAATGTTGCGAACATTAATGCTTCTCACTTCATTGTATGCCATTGTATTGTGTTATTTGTTTGCGTTTGTCTTTCCATATTTTCTTGCTTTATGATGTGCGCGTAAATAAATATATATGACCCATAACACACATCAAATTATCATCTTCTTATGGAAAGCGCTTGTAAGTTGTTTCTCACGCGTCACAAGTGTTTAGCTGTAGTTACAAACTTTGTTCTTATGATAATCGTATGACTCTGCTTTCCGTCTTATTTTCTCTAGTACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGGGCGACATCCATGAGTTCTGCATCATCGACAGACAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGGTTGATTTCTAGGCGCGAGAAGGGTTCAAGCCATTTACACGAGGAGTCAGAACCTCTAAGAGGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGCAAATGGAATGGATCTGCTTGTCTTGACGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGATCCCATCAACTAAATCTACCACTGGAGCAGGGTATGCTTATACATCTTCGGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGGTCGATTTTTTTGATAACTTCATTTTATCCTTGATTTTATTTAATTGCTCATCAAAATCTATGATTTTGGCCCTCAATATTCTTGTTTTTTGAGCTTATAGGGGGATAAACAAGTTACTAATCCACACGTTTTTTGACATGCCGAAATTTCATTCTGCTCGTTAAATTTTCTTTTTTTTCCCTAGCAGAATATACCTCAGAGAATCCCAAGATAGTGACAAAATGCTGTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGGTATGCCTCTTTTTCTCCATCATATCATATGAACTTGTTCAATCACTATCTCAAAGCCACCCTATTAGTTGCGTTCTAGTGACTCGGATTGATGTTCGGATCTTTTTATGTTTTGGAAGTTCTGTGTTTTGTAAGCGTCGCCATTATTTGGCAAAATATGACTTTATGATTTGACGCAATTGATTTTAAGATTAATATTTCTTGGTACTTTAGTATGGATTGAGCATAAGGACTATTCTGGATTTGCAGAACCATCGTGGTTCGTTTAGAAATTGAAAAAATGTCTAGTTAACATAGATGGTCTATACGATCCATTTATTTATGTCTATCCTATCCTTGTGTCATCTTCGCTCAGAACCGACTGATTAAGCTACGTTATAATAACTCCTATAAAAAAAAACTTGTAGAACATCAGAAGTTTAAGAGAACACATCATTTTTCTTTTTCTTATGTGCTTAGAATGGGATCACTCAATTTCATTTTTTGTTTTTGTTGATAACCTGAGGGTTCTCAAGCTAACCTGGGGGCACCTACACCTGCCCCTAGGATTGAAACTCCATGTGACCTCTGGGTAGGTGTCGTGCGCCTTTTGCGGAGGGGCCACCCCTTGGGCACTTGTTGATCACGTTTTGACCGTAAATATTTATGCTTGATTGATACACTACACCATTTTGTGATATTCGATTGGTCGGGTAGTGCTTCGGCGTTTTTTGGTATAATAACTGATGTTCTTTTCCTCAGCTCCTTCACTGGTGAAGCTTTGGGGAATGATCTTGAAACGCGATCCTTAG

mRNA sequence

TCCGTATATTCTCGCGATTTCCGTCTTCCAGGTTTCTCTGTCCTCCACCCACCCACCCACCCACCCACCGAAGATCGTATTATCTTTCGGTCTTCTCTTCTCCCTCCACTTTACTGCTCTTTCAAGGTGAAAATCACAGTTTGAAAATCCAGTTTATTCAAATTGAAGAGGGAGGGTACTAGTTCGTGGAGGAAATAGTACTTCTGCGGGCTTATGTACTCTCGTATCCATTTGCCAACATAATCATTGGCCAATAATTTTGAACTTGAATGCAAGTGAATAGCTGAATTGATCTATCTGTTGACTTGGGAATCTGCTGGATTAGATAATCGAGAATTTTAAGAGATTTGTGGGCGTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCATGGACGATTTTGAAGACTATGTCAATCCTAATAGTTCGGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAACGCCTACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGGGCGACATCCATGAGTTCTGCATCATCGACAGACAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGGTTGATTTCTAGGCGCGAGAAGGGTTCAAGCCATTTACACGAGGAGTCAGAACCTCTAAGAGGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGCAAATGGAATGGATCTGCTTGTCTTGACGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGATCCCATCAACTAAATCTACCACTGGAGCAGGGTATGCTTATACATCTTCGGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGAATATACCTCAGAGAATCCCAAGATAGTGACAAAATGCTGTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGGTATGCCTCTTTTTCTCCATCATATCATATGAACTTGTTCAATCACTATCTCAAAGCCACCCTATTAGTTGCGTTCTAGTGACTCGGATTGATGTTCGGATCTTTTTATGTTTTGGAAGTTCTGTGTTTTCTCCTTCACTGGTGAAGCTTTGGGGAATGATCTTGAAACGCGATCCTTAG

Coding sequence (CDS)

ATGGGTGCTGTCTGCTGCTGTTTGAGCATGGACGATTTTGAAGACTATGTCAATCCTAATAGTTCGGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAACGCCTACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGGGCGACATCCATGAGTTCTGCATCATCGACAGACAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGGTTGATTTCTAGGCGCGAGAAGGGTTCAAGCCATTTACACGAGGAGTCAGAACCTCTAAGAGGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGCAAATGGAATGGATCTGCTTGTCTTGACGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGATCCCATCAACTAAATCTACCACTGGAGCAGGGTATGCTTATACATCTTCGGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGAATATACCTCAGAGAATCCCAAGATAGTGACAAAATGCTGTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGGTATGCCTCTTTTTCTCCATCATATCATATGAACTTGTTCAATCACTATCTCAAAGCCACCCTATTAGTTGCGTTCTAGTGACTCGGATTGATGTTCGGATCTTTTTATGTTTTGGAAGTTCTGTGTTTTCTCCTTCACTGGTGAAGCTTTGGGGAATGATCTTGAAACGCGATCCTTAG

Protein sequence

MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGATSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRGEVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLFFSIISYELVQSLSQSHPISCVLVTRIDVRIFLCFGSSVFSPSLVKLWGMILKRDP

Homology

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BLAST of Carg05897 vs. NCBI nr
Match: XP_022954554.1 (E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954561.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954569.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_023548844.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548852.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548861.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548868.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 460.3 bits (1183), Expect = 4.6e-126
Identity = 221/223 (99.10%), Postives = 221/223 (99.10%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV  F
Sbjct: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVMAF 223

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BLAST of Carg05897 vs. NCBI nr
Match: XP_022990150.1 (E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_022990152.1 E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_022990153.1 E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_022990154.1 E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima])

HSP 1 Score: 457.6 bits (1176), Expect = 3.0e-125
Identity = 219/223 (98.21%), Postives = 221/223 (99.10%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           EVDTDS+SLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSESLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           LEEYTSENPKI+TKCCHHFHLGCIYEWMERSDNCPVCGKV  F
Sbjct: 181 LEEYTSENPKILTKCCHHFHLGCIYEWMERSDNCPVCGKVMAF 223

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BLAST of Carg05897 vs. NCBI nr
Match: XP_008459404.1 (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo])

HSP 1 Score: 433.0 bits (1112), Expect = 7.9e-118
Identity = 206/223 (92.38%), Postives = 214/223 (95.96%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCCLS++DFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVH VSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           TSM+S +STDNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           EVDTDSDSLGSAGKWNGSACL+ESKENLGKSSLK PSTKST+G GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           LEEYTSENPKIVTKC HHFHLGCIYEWMERSDNCPVCGK   F
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAF 223

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BLAST of Carg05897 vs. NCBI nr
Match: XP_004141476.1 (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis sativus] >KGN52530.1 hypothetical protein Csa_5G642120 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 9.7e-116
Identity = 204/223 (91.48%), Postives = 212/223 (95.07%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCCLS++DFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVH VSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           TSM+S +STDNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           EVDTDSDSLGS GK NGSACL+ESKENLGKSSLK PSTKST+G GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           LEEYTSENPKIVTKC HHFHLGCIYEWMERSDNCPVCGK   F
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAF 223

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BLAST of Carg05897 vs. NCBI nr
Match: XP_022134111.1 (E3 ubiquitin-protein ligase At3g02290 [Momordica charantia] >XP_022134112.1 E3 ubiquitin-protein ligase At3g02290 [Momordica charantia])

HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115
Identity = 201/223 (90.13%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCCLS++D+EDYVNPNSS+YRNCTCLSCFIQNFLNAYTLIFRRGEVH VSSSIQG 
Sbjct: 1   MGAVCCCLSVEDYEDYVNPNSSLYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGT 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           TSM+S +STDNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           EVD DSDSL + GKWNGSACLDESKENLGKSSLK PSTKSTTG GYAYTSSEDEDVCPTC
Sbjct: 121 EVDADSDSLDTPGKWNGSACLDESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           LEEYTSENPKI+T+C HHFHLGCIYEWMERSDNCPVCGKV  F
Sbjct: 181 LEEYTSENPKIMTQCSHHFHLGCIYEWMERSDNCPVCGKVMAF 223

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BLAST of Carg05897 vs. TAIR10
Match: AT3G02290.1 (RING/U-box superfamily protein)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-72
Identity = 139/231 (60.17%), Postives = 163/231 (70.56%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG V  C  ++D ++Y+NPNSSVYRNC C+ C   NFLN Y  +FRRGE   + SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            S++S+SS DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLR 
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 EVDTDSDSLGSAG-KW-NGSACL---DESKENLGKSSLKIPSTKSTT---GAGYAYTSSE 180
           + D DS+S G  G KW N  + L   D  +E   KSSL+I  ++S +    +   Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           DEDVCPTCLEEYTSENPKIVTKC HHFHL CIYEWMERS+NCPVCGKV  F
Sbjct: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEF 227

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BLAST of Carg05897 vs. TAIR10
Match: AT5G15790.1 (RING/U-box superfamily protein)

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-71
Identity = 137/230 (59.57%), Postives = 164/230 (71.30%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG V  C  +DDFEDY NP+SSV R+C C  C + NFLN Y  +FRRGE   + SS+Q A
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQ-A 60

Query: 61  TSMSSASST--DNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPL 120
           T++S A+ST  DN +S  + S PRPLPYDADPRY R +RD L+SRR+KGSSH HEE+EPL
Sbjct: 61  TNVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPL 120

Query: 121 RGEVDTDSDSLGSAG-KWNGSACL--DESKENLGKSSLKI--PSTKSTTGAGYAYTSSED 180
           R + D DS+S    G KW     +  ++SKE   +SS +I    T ST+  G  Y +S+D
Sbjct: 121 RSDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEG-LYITSDD 180

Query: 181 EDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           EDVCPTCLEEY SENPKIVTKC HHFHL CIYEWMERS+NCPVCGKV  F
Sbjct: 181 EDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEF 228

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BLAST of Carg05897 vs. TAIR10
Match: AT5G38895.3 (RING/U-box superfamily protein)

HSP 1 Score: 263.5 bits (672), Expect = 1.5e-70
Identity = 124/224 (55.36%), Postives = 156/224 (69.64%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGA CCC  +D FE YVNPN+S+ RNC CL+CF+Q+F++ Y  +F RG +HP+ S+++ A
Sbjct: 106 MGAFCCCFQVDLFESYVNPNTSITRNCPCLNCFLQSFMDLYASLFSRGGMHPIPSTVETA 165

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           T M+S ++ D+SLS +Y SPP PLPYDADPRY R           KGSSH  EESEPLRG
Sbjct: 166 TVMNSTTALDDSLSSVYHSPPTPLPYDADPRYFRF---------VKGSSHSGEESEPLRG 225

Query: 121 EVDTDSDSLGSAG-KWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPT 180
           + +  S++LG  G KW+ S   D SKE   K S     +K+  G    Y  S+DED+CPT
Sbjct: 226 DTEMSSEALGDGGAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYYADSDDEDICPT 285

Query: 181 CLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           CL++YT ENPKI+TKC HHFHL CIYEWMERS+ CPVCGKV  F
Sbjct: 286 CLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAF 320

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BLAST of Carg05897 vs. TAIR10
Match: AT5G41350.1 (RING/U-box superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-16
Identity = 59/188 (31.38%), Postives = 89/188 (47.34%), Query Frame = 0


Query: 52  PVSSSIQGATSMSSA------SSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDG----LI 111
           P+SS+    +S  S       ++ + S  + Y  PP P P+D      +    G     +
Sbjct: 33  PLSSAHNRTSSAISTGVVVVDTNLETSSPDAYIPPPLPTPFDVPIGIPQTPASGEEATCV 92

Query: 112 SRREKGSSHLHEESEPLRGEVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKST 171
             RE      + ES     +   D  +LG       + C  +  ++  ++ + + ST+  
Sbjct: 93  DIREVSVDSANTES----AQETVDGITLGVP-----TTCSHKETDSKIQTEIDLESTEEI 152

Query: 172 TG--AGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGK 228
               +   +   E+E+ CP CLEEY  ENPK+V KC HHFHL CI EWMERS+ CPVC K
Sbjct: 153 DPKLSKAVFIPIEEEEDCPICLEEYDIENPKLVAKCDHHFHLACILEWMERSETCPVCNK 211

[Close]

BLAST of Carg05897 vs. TAIR10
Match: AT4G00335.1 (RING-H2 finger B1A)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-15
Identity = 46/110 (41.82%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 124 TDSDSLGSAGKWNGSA------C--LDESKENLGKSSLKIPSTKS--TTGAGYAYTSSED 183
           TDS+S+   G+ +GS+      C  L ES      SS+ +   KS  +   G      E+
Sbjct: 78  TDSESI--KGRMSGSSFETLATCEDLGESDCKTLASSVILSPRKSDFSKHQGLKILVDEE 137

Query: 184 EDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           ED CP C E+Y  ENP++ TKC H FHL C+ EW+ERSD CP+C K  +F
Sbjct: 138 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVF 185

[Close]

BLAST of Carg05897 vs. Swiss-Prot
Match: sp|Q8LE94|RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.2e-71
Identity = 139/231 (60.17%), Postives = 163/231 (70.56%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG V  C  ++D ++Y+NPNSSVYRNC C+ C   NFLN Y  +FRRGE   + SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            S++S+SS DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLR 
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 EVDTDSDSLGSAG-KW-NGSACL---DESKENLGKSSLKIPSTKSTT---GAGYAYTSSE 180
           + D DS+S G  G KW N  + L   D  +E   KSSL+I  ++S +    +   Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           DEDVCPTCLEEYTSENPKIVTKC HHFHL CIYEWMERS+NCPVCGKV  F
Sbjct: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEF 227

[Close]

BLAST of Carg05897 vs. Swiss-Prot
Match: sp|Q2HIJ8|RHB1A_ARATH (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-14
Identity = 46/110 (41.82%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 124 TDSDSLGSAGKWNGSA------C--LDESKENLGKSSLKIPSTKS--TTGAGYAYTSSED 183
           TDS+S+   G+ +GS+      C  L ES      SS+ +   KS  +   G      E+
Sbjct: 78  TDSESI--KGRMSGSSFETLATCEDLGESDCKTLASSVILSPRKSDFSKHQGLKILVDEE 137

Query: 184 EDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           ED CP C E+Y  ENP++ TKC H FHL C+ EW+ERSD CP+C K  +F
Sbjct: 138 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVF 185

[Close]

BLAST of Carg05897 vs. Swiss-Prot
Match: sp|Q93ZF6|AIRP1_ARATH (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-13
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 175 DVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGK 220
           D CP CLEEY  +NPK++TKC H FHL CI  WMERS+ CPVC K
Sbjct: 102 DECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDK 146

[Close]

BLAST of Carg05897 vs. Swiss-Prot
Match: sp|Q4TU14|RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.1e-09
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 177 CPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLFFSIISYELV---- 236
           C  CLE +T ++P  VT C H +HL CI EW +RS  CP+C ++ +     S EL+    
Sbjct: 46  CSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVLRDPASQELLAAVE 105

Query: 237 -------QSLSQSHPIS 243
                  +++S S PIS
Sbjct: 106 KERLLKTRNISSSSPIS 122

[Close]

BLAST of Carg05897 vs. Swiss-Prot
Match: sp|Q9ZT42|RHF2A_ARATH (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.2e-09
Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 161 TTGAGYAYTSSED--EDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCG 220
           T+ A +     +D  +D C  CLE +   +P  +T C H +HL CI EW +RS  CP+C 
Sbjct: 15  TSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCW 74

Query: 221 KVCLFFSIISYELVQSLSQ 238
           +        S EL++++ Q
Sbjct: 75  QSISLKDPTSQELLEAVEQ 93

[Close]

BLAST of Carg05897 vs. TrEMBL
Match: tr|A0A1S3CA28|A0A1S3CA28_CUCME (E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 5.3e-118
Identity = 206/223 (92.38%), Postives = 214/223 (95.96%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCCLS++DFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVH VSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           TSM+S +STDNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           EVDTDSDSLGSAGKWNGSACL+ESKENLGKSSLK PSTKST+G GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           LEEYTSENPKIVTKC HHFHLGCIYEWMERSDNCPVCGK   F
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAF 223

[Close]

BLAST of Carg05897 vs. TrEMBL
Match: tr|A0A0A0KSH8|A0A0A0KSH8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 6.4e-116
Identity = 204/223 (91.48%), Postives = 212/223 (95.07%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCCLS++DFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVH VSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           TSM+S +STDNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           EVDTDSDSLGS GK NGSACL+ESKENLGKSSLK PSTKST+G GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           LEEYTSENPKIVTKC HHFHLGCIYEWMERSDNCPVCGK   F
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAF 223

[Close]

BLAST of Carg05897 vs. TrEMBL
Match: tr|A0A2P5E976|A0A2P5E976_9ROSA (43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_220940 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 6.0e-98
Identity = 170/223 (76.23%), Postives = 192/223 (86.10%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG+VCCCLS+DDFEDYVNPNSSVYRNC CLSCF+QNF+N YT +FRRGEVH + SSIQGA
Sbjct: 1   MGSVCCCLSVDDFEDYVNPNSSVYRNCICLSCFLQNFINVYTSLFRRGEVHSLPSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            SM+S +S DNSL+++YRSPPRPLPYDADPRY RLQRDGLISRR+KGSSH HEESEPLR 
Sbjct: 61  ASMTSTASLDNSLADMYRSPPRPLPYDADPRYFRLQRDGLISRRDKGSSHSHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           + D D +SL +A KWN S C D SKE+  KSSLK+  TK+ TG G  YTSSE+EDVCPTC
Sbjct: 121 DTDADPESLTTADKWNESVCEDGSKEHRSKSSLKLSVTKTMTGVGNIYTSSEEEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           LEEYT ENPKI+TKC HHFHLGCIYEWMERSD+CPVCGKV +F
Sbjct: 181 LEEYTPENPKIMTKCSHHFHLGCIYEWMERSDSCPVCGKVMVF 223

[Close]

BLAST of Carg05897 vs. TrEMBL
Match: tr|W9RK62|W9RK62_9ROSA (E3 ubiquitin-protein ligase OS=Morus notabilis OX=981085 GN=L484_018166 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 3.9e-97
Identity = 169/229 (73.80%), Postives = 193/229 (84.28%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCC S++DFEDYVNPNSSVYRNC CLSCF+QNF+N YT +FRR EVH + SSIQGA
Sbjct: 1   MGAVCCCFSVEDFEDYVNPNSSVYRNCICLSCFLQNFINVYTSLFRRSEVHSLPSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            S+SS +S DNSL+++YRSPPRPLPYDADPRY RLQRDGLISRREKG+SH HEESEPLR 
Sbjct: 61  ASLSSTTSLDNSLADMYRSPPRPLPYDADPRYFRLQRDGLISRREKGTSHSHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           + D DS+SL +A KWN S C D SKE+  KSSLK+  TK+TTG G  YTSSEDEDVCPTC
Sbjct: 121 DTDADSESLSTADKWNESVCEDGSKEHRSKSSLKLSVTKTTTGVGNIYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLFFSIISY 230
           LEEYT ENPKI+TKC HHFHL CIYEWMERS++CPVCGKV     ++S+
Sbjct: 181 LEEYTPENPKIMTKCSHHFHLACIYEWMERSESCPVCGKVFFPTMVVSF 229

[Close]

BLAST of Carg05897 vs. TrEMBL
Match: tr|A0A067JND7|A0A067JND7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25599 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 8.7e-97
Identity = 168/223 (75.34%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG+VCCCL  +DFEDY+NPNSS YRNC CLSCF+QNFL+ Y+ +FRRGEVH V SSIQGA
Sbjct: 1   MGSVCCCLHAEDFEDYMNPNSSAYRNCMCLSCFLQNFLHLYSSLFRRGEVHSVPSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            SM+S+SS DNSLS++YRSPPRPLPYDADPRY RLQRDGL+SRREKGSSH HEESEPLR 
Sbjct: 61  ASMTSSSSLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHAHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           + D DSDSL +  KW  SAC + SKE   +SSLK+ S K+T G GY Y+SSEDEDVCPTC
Sbjct: 121 DNDGDSDSLSTGDKWTASACEEGSKEQRARSSLKLSSAKATVGIGYIYSSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVCLF 224
           LEEYT ENPKIVTKC HHFHLGCIYEWMERSD+CPVCGK  +F
Sbjct: 181 LEEYTPENPKIVTKCSHHFHLGCIYEWMERSDSCPVCGKAMVF 223

The following BLAST results are available for this feature:

BLAST of Carg05897 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954554.1	4.6e-126	99.10	E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954561.1 E3 ub...	[more]
XP_022990150.1	3.0e-125	98.21	E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_02299015...	[more]
XP_008459404.1	7.9e-118	92.38	PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo]	[more]
XP_004141476.1	9.7e-116	91.48	PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis sativus] >KGN52530.1 h...	[more]
XP_022134111.1	1.3e-115	90.13	E3 ubiquitin-protein ligase At3g02290 [Momordica charantia] >XP_022134112.1 E3 u...	[more]

BLAST of Carg05897 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02290.1	1.2e-72	60.17	RING/U-box superfamily protein	[more]
AT5G15790.1	2.3e-71	59.57	RING/U-box superfamily protein	[more]
AT5G38895.3	1.5e-70	55.36	RING/U-box superfamily protein	[more]
AT5G41350.1	1.6e-16	31.38	RING/U-box superfamily protein	[more]
AT4G00335.1	1.8e-15	41.82	RING-H2 finger B1A	[more]

BLAST of Carg05897 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LE94\|RING3_ARATH	2.2e-71	60.17	E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g022...	[more]
sp\|Q2HIJ8\|RHB1A_ARATH	3.3e-14	41.82	Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
sp\|Q93ZF6\|AIRP1_ARATH	3.6e-13	66.67	E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 ...	[more]
sp\|Q4TU14\|RHF1A_ARATH	4.1e-09	37.66	E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 ...	[more]
sp\|Q9ZT42\|RHF2A_ARATH	9.2e-09	34.18	E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 ...	[more]

BLAST of Carg05897 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CA28\|A0A1S3CA28_CUCME	5.3e-118	92.38	E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE...	[more]
tr\|A0A0A0KSH8\|A0A0A0KSH8_CUCSA	6.4e-116	91.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 PE=4 SV=1	[more]
tr\|A0A2P5E976\|A0A2P5E976_9ROSA	6.0e-98	76.23	43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_220940 PE=...	[more]
tr\|W9RK62\|W9RK62_9ROSA	3.9e-97	73.80	E3 ubiquitin-protein ligase OS=Morus notabilis OX=981085 GN=L484_018166 PE=4 SV=...	[more]
tr\|A0A067JND7\|A0A067JND7_JATCU	8.7e-97	75.34	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25599 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05897-RA	Carg05897-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 177..217 e-value: 1.3E-5 score: 34.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 176..217 e-value: 2.1E-10 score: 40.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 177..217 score: 11.678
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 153..221 e-value: 3.2E-14 score: 53.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..123
None	No IPR available	PANTHER	PTHR44400:SF2	RING/U-BOX SUPERFAMILY PROTEIN	coord: 1..223
None	No IPR available	PANTHER	PTHR44400	FAMILY NOT NAMED	coord: 1..223
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 172..223

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05897	Cla016502	Watermelon (97103) v1	carwmB0025
Carg05897	Csa5G642120	Cucumber (Chinese Long) v2	carcuB0021
Carg05897	MELO3C022050	Melon (DHL92) v3.5.1	carmeB0018
Carg05897	ClCG11G004970	Watermelon (Charleston Gray)	carwcgB0019
Carg05897	CSPI05G29560	Wild cucumber (PI 183967)	carcpiB0022
Carg05897	Cucsa.238510	Cucumber (Gy14) v1	carcgyB0024
Carg05897	CmaCh15G002210	Cucurbita maxima (Rimu)	carcmaB0030
Carg05897	CmoCh15G002320	Cucurbita moschata (Rifu)	carcmoB0031
Carg05897	CmoCh04G029440	Cucurbita moschata (Rifu)	carcmoB0033
Carg05897	Lsi03G001880	Bottle gourd (USVL1VR-Ls)	carlsiB017
Carg05897	Cp4.1LG01g22390	Cucurbita pepo (Zucchini)	carcpeB0034
Carg05897	Cp4.1LG13g08020	Cucurbita pepo (Zucchini)	carcpeB0031
Carg05897	CsGy5G029000	Cucumber (Gy14) v2	carcgybB0021
Carg05897	MELO3C022050.2	Melon (DHL92) v3.6.1	carmedB0019
Carg05897	CsaV3_5G038700	Cucumber (Chinese Long) v3	carcucB0022
Carg05897	Cla97C11G211760	Watermelon (97103) v2	carwmbB0015
Carg05897	Bhi06G000258	Wax gourd	carwgoB0018

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05897	Carg02207	Silver-seed gourd	carcarB020

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05897	Wax gourd	carwgoB0020
Carg05897	Cucurbita maxima (Rimu)	carcmaB0033