CmoCh04G029440 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G029440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING/U-box superfamily protein
LocationCmo_Chr04 : 20846871 .. 20848902 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCTGTCTGCTGCTGTTTGAGCATGGACGATTTTGAAGACTATGTCAATCCTAATAGTTCGGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAACGCCGTAAGCCCTATTTTCGTTGCATTTTTTGCGATTGTGTCACTGTGAAGGATGAAAATTTCGTTATTTCATAAATAACGTGTTTTGTTCGAATGCTAATAATGGTGAAAATTCGAAGAAAATGTTGCGAACATTAATGCTTCTCACTTCATTGTATGCCATTGTATTGTGTTATTTGTTTGCGTTTGTCTTTCCATATTTTCTTGCTTTATGATGCGCGCGTAAATAAATATATATGACCCATAACGCACATCAAATTATCATCTTCTTATGGAAAGCGCTTGTAAGTTGTTTCTCACGCGTCACAATTGTTTAGCTGTAGTTACAAACTTTGTTCTTATGATAATCGTATGACTCTGCTTTCCGTCTTATTTTCTCTAGTACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGGGCGACATCCATGAGTTCTGCATCATCGACAGACAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTGATTTCGAGGCGCGAGAAGGGTTCAAGCCATTTACATGAGGAGTCAGAACCTCTAAGAGGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGCAAATGGAATGGATCTGCTTGTCTTGACGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGATCCCATCAACTAAATCTACCACTGGAGCAGGGTATGCTTATACATCTTCGGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGGTCGATTTTTTTGATAACTTCATTTTATCCTTGATTTTATTTAATTGCTCATCAAAATCTATGATTTTGGCCCTCAATATTCTTGTTTTTTGAGCTTATAGGGGGATAAACAAGTTACTAATCCACACGTTTTTTGACATGCCGAAATTTTCATTCTGCTCGTTAAATTTTCTTTTTTTCCCTAGCAGAATATACCTCAGAGAATCCCAAGATAGTGACAAAATGCTGTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGGTATGCCTCTTTTTCTCCATCATATCATATGAACTTGTTCAATCACTATCTCAAAGCCACCCTATTAGTTGCGTTCTAGTGACTCGGATTGATGTTCGGATCTTTTTATGTTTTGGAAGTTCTGTGTTTCGTAAGCGTCGCCATTATTTGGCAAAATATGACTTTATGATTTGACGCAATTGATTTTAAGATTAATATTTCTTGGTACTTTAGTATGGATTGAGCATAAGGACTATTCTGGATTTGCAGAACCATCGTGGTTCGTTTAGAAATTGAAAAAATGTCTAGTTAACATAGATGGTCTATACGATCCATTTATTTATGTCTACCCTATCCTTGTGTCATCTTCGCTCAGAACCGACTTATTAAGCTACGTTATAATAACTCCTATAAAAAAAAAAACTTGTAGAACATCAGAAGTTTAAGAGAACACATCATTTTTCTTTTTCTTATGTGCTTCTTAGAATGGGATCACTCAATTTCATTTTTTGTTTTTGTTGATAACCTGAGGGTTCTCAAGCTAACCTGGGGGCACCTACACCCGCCCCTAGGATTGAAACCCCATGTGACCTCTGGGTAGGTGTCGTGCGCCTTTTGCGGAGGGGCCACCCCTTGGGCACTTGTTGATCTCGTTTTGACGTAAATATTTATGCTTGATTGATACACTACACCATTTTGTGATATTCGATTGGTCGGGTAGTGCTTCGGCGTTTTTTGGTATAATAACTGATGTTCTTTTCCTCAGCTCCTTCACTGGTGAAGCTTTGGGGAATGATCTTGAAACGCGATCCTTAGATGCTCATCTCTAA

mRNA sequence

ATGGGTGCTGTCTGCTGCTGTTTGAGCATGGACGATTTTGAAGACTATGTCAATCCTAATAGTTCGGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAACGCCTACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGGGCGACATCCATGAGTTCTGCATCATCGACAGACAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTGATTTCGAGGCGCGAGAAGGGTTCAAGCCATTTACATGAGGAGTCAGAACCTCTAAGAGGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGCAAATGGAATGGATCTGCTTGTCTTGACGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGATCCCATCAACTAAATCTACCACTGGAGCAGGGTATGCTTATACATCTTCGGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGAATATACCTCAGAGAATCCCAAGATAGTGACAAAATGCTGTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGGTGTCGTGCGCCTTTTGCGGAGGGGCCACCCCTTGGGCACTTGTTGATCTCGTTTTGACCTCCTTCACTGGTGAAGCTTTGGGGAATGATCTTGAAACGCGATCCTTAGATGCTCATCTCTAA

Coding sequence (CDS)

ATGGGTGCTGTCTGCTGCTGTTTGAGCATGGACGATTTTGAAGACTATGTCAATCCTAATAGTTCGGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAACGCCTACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGGGCGACATCCATGAGTTCTGCATCATCGACAGACAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTGATTTCGAGGCGCGAGAAGGGTTCAAGCCATTTACATGAGGAGTCAGAACCTCTAAGAGGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGCAAATGGAATGGATCTGCTTGTCTTGACGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGATCCCATCAACTAAATCTACCACTGGAGCAGGGTATGCTTATACATCTTCGGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGAATATACCTCAGAGAATCCCAAGATAGTGACAAAATGCTGTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGGTGTCGTGCGCCTTTTGCGGAGGGGCCACCCCTTGGGCACTTGTTGATCTCGTTTTGACCTCCTTCACTGGTGAAGCTTTGGGGAATGATCTTGAAACGCGATCCTTAGATGCTCATCTCTAA
Homology
[Close]
BLAST of CmoCh04G029440 vs. Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.5e-71
Identity = 138/228 (60.53%), Postives = 162/228 (71.05%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG V  C  ++D ++Y+NPNSSVYRNC C+ C   NFLN Y  +FRRGE   + SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            S++S+SS DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLR 
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 EVDTDSDSLGSAG-KW-NGSACL---DESKENLGKSSLKIPSTKSTT---GAGYAYTSSE 180
           + D DS+S G  G KW N  + L   D  +E   KSSL+I  ++S +    +   Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV 221
           DEDVCPTCLEEYTSENPKIVTKC HHFHL CIYEWMERS+NCPVCGKV
Sbjct: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKV 224

[Close]
BLAST of CmoCh04G029440 vs. Swiss-Prot
Match: RHB1A_ARATH (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana GN=RHB1A PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.7e-14
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 1 

Query: 124 TDSDSLGSAGKWNGSACLDESK-ENLGKSSLK-------IPSTKS--TTGAGYAYTSSED 183
           TDS+S+   G+ +GS+    +  E+LG+S  K       +   KS  +   G      E+
Sbjct: 78  TDSESI--KGRMSGSSFETLATCEDLGESDCKTLASSVILSPRKSDFSKHQGLKILVDEE 137

Query: 184 EDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGK 220
           ED CP C E+Y  ENP++ TKC H FHL C+ EW+ERSD CP+C K
Sbjct: 138 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDK 181

[Close]
BLAST of CmoCh04G029440 vs. Swiss-Prot
Match: RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-09
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 1 

Query: 147 NLGKSSLKIPSTKSTTGAGYAYTSSEDED-----VCPTCLEEYTSENPKIVTKCCHHFHL 206
           NL  +S   P+  S++ +  A   + D+D      C  CLE +T ++P  VT C H +HL
Sbjct: 11  NLSDNSPFNPAIGSSSSSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHL 70

Query: 207 GCIYEWMERSDNCPVC 218
            CI EW +RS  CP+C
Sbjct: 71  QCIIEWSQRSKECPIC 86

[Close]
BLAST of CmoCh04G029440 vs. TrEMBL
Match: A0A0A0KSH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G642120 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 9.4e-116
Identity = 203/219 (92.69%), Postives = 211/219 (96.35%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCCLS++DFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVH VSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           TSM+S +STDNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           EVDTDSDSLGS GK NGSACL+ESKENLGKSSLK PSTKST+G GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGK 220
           LEEYTSENPKIVTKC HHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of CmoCh04G029440 vs. TrEMBL
Match: W9RK62_9ROSA (E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_018166 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 4.4e-97
Identity = 168/220 (76.36%), Postives = 189/220 (85.91%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCC S++DFEDYVNPNSSVYRNC CLSCF+QNF+N YT +FRR EVH + SSIQGA
Sbjct: 1   MGAVCCCFSVEDFEDYVNPNSSVYRNCICLSCFLQNFINVYTSLFRRSEVHSLPSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            S+SS +S DNSL+++YRSPPRPLPYDADPRY RLQRDGLISRREKG+SH HEESEPLR 
Sbjct: 61  ASLSSTTSLDNSLADMYRSPPRPLPYDADPRYFRLQRDGLISRREKGTSHSHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           + D DS+SL +A KWN S C D SKE+  KSSLK+  TK+TTG G  YTSSEDEDVCPTC
Sbjct: 121 DTDADSESLSTADKWNESVCEDGSKEHRSKSSLKLSVTKTTTGVGNIYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV 221
           LEEYT ENPKI+TKC HHFHL CIYEWMERS++CPVCGKV
Sbjct: 181 LEEYTPENPKIMTKCSHHFHLACIYEWMERSESCPVCGKV 220

[Close]
BLAST of CmoCh04G029440 vs. TrEMBL
Match: A0A067JND7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25599 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.2e-96
Identity = 167/219 (76.26%), Postives = 187/219 (85.39%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG+VCCCL  +DFEDY+NPNSS YRNC CLSCF+QNFL+ Y+ +FRRGEVH V SSIQGA
Sbjct: 1   MGSVCCCLHAEDFEDYMNPNSSAYRNCMCLSCFLQNFLHLYSSLFRRGEVHSVPSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            SM+S+SS DNSLS++YRSPPRPLPYDADPRY RLQRDGL+SRREKGSSH HEESEPLR 
Sbjct: 61  ASMTSSSSLDNSLSDMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHAHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           + D DSDSL +  KW  SAC + SKE   +SSLK+ S K+T G GY Y+SSEDEDVCPTC
Sbjct: 121 DNDGDSDSLSTGDKWTASACEEGSKEQRARSSLKLSSAKATVGIGYIYSSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGK 220
           LEEYT ENPKIVTKC HHFHLGCIYEWMERSD+CPVCGK
Sbjct: 181 LEEYTPENPKIVTKCSHHFHLGCIYEWMERSDSCPVCGK 219

[Close]
BLAST of CmoCh04G029440 vs. TrEMBL
Match: M5WZ55_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011007mg PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 8.3e-96
Identity = 166/220 (75.45%), Postives = 188/220 (85.45%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG+VCCCL+ +DFEDYVNPNSS YRNC CLSCFI+NFLN YT +FRRGEVH + SSIQGA
Sbjct: 1   MGSVCCCLNAEDFEDYVNPNSSAYRNCICLSCFIENFLNVYTSLFRRGEVHSIPSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            SM+S++S DNS+S++YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSH HEE+EPLR 
Sbjct: 61  ASMTSSASLDNSISDMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHSHEEAEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           + D DS+ L +  KWNGSAC D  KE+  KSS+K  S K+TT  G  Y SSEDEDVCPTC
Sbjct: 121 DTDADSECLSTGEKWNGSACEDGVKEHRSKSSMKFSSAKATTIVGNFYISSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV 221
           LEEYT ENPKI+TKC HHFHLGCIYEWMERS++CPVCGKV
Sbjct: 181 LEEYTPENPKIMTKCSHHFHLGCIYEWMERSESCPVCGKV 220

[Close]
BLAST of CmoCh04G029440 vs. TrEMBL
Match: A0A0B2REM2_GLYSO (E3 ubiquitin-protein ligase OS=Glycine soja GN=glysoja_037819 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 3.2e-95
Identity = 167/220 (75.91%), Postives = 190/220 (86.36%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCC ++DDFEDY+NPNSSVYRNC CLSCF+QNFL  Y  IFRRGEVH + SSIQGA
Sbjct: 1   MGAVCCCFNVDDFEDYMNPNSSVYRNCMCLSCFVQNFLTVYESIFRRGEVHAIPSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            SM+S +S DNSLS++YRSPPRPLPYDADPR+ R QR+GL+SRREKGSSHL+EESEPLRG
Sbjct: 61  ASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFRSQREGLVSRREKGSSHLNEESEPLRG 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           +VD DS+SL S GKWN ++  D SKE   KSS+++ S K TTGAG  Y+SSE+EDVCPTC
Sbjct: 121 DVDADSESLNSGGKWNDTS-EDGSKEYRSKSSVRLSSAKLTTGAGVVYSSSEEEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV 221
           LEEYT ENPKIVTKC HHFHLGCIYEWMERSD+CPVCGKV
Sbjct: 181 LEEYTEENPKIVTKCSHHFHLGCIYEWMERSDSCPVCGKV 219

[Close]
BLAST of CmoCh04G029440 vs. TAIR10
Match: AT3G02290.1 (AT3G02290.1 RING/U-box superfamily protein)

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-72
Identity = 138/228 (60.53%), Postives = 162/228 (71.05%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG V  C  ++D ++Y+NPNSSVYRNC C+ C   NFLN Y  +FRRGE   + SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            S++S+SS DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLR 
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 EVDTDSDSLGSAG-KW-NGSACL---DESKENLGKSSLKIPSTKSTT---GAGYAYTSSE 180
           + D DS+S G  G KW N  + L   D  +E   KSSL+I  ++S +    +   Y  SE
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV 221
           DEDVCPTCLEEYTSENPKIVTKC HHFHL CIYEWMERS+NCPVCGKV
Sbjct: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKV 224

[Close]
BLAST of CmoCh04G029440 vs. TAIR10
Match: AT5G15790.1 (AT5G15790.1 RING/U-box superfamily protein)

HSP 1 Score: 265.4 bits (677), Expect = 3.7e-71
Identity = 136/227 (59.91%), Postives = 163/227 (71.81%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG V  C  +DDFEDY NP+SSV R+C C  C + NFLN Y  +FRRGE   + SS+Q A
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQ-A 60

Query: 61  TSMSSASST--DNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPL 120
           T++S A+ST  DN +S  + S PRPLPYDADPRY R +RD L+SRR+KGSSH HEE+EPL
Sbjct: 61  TNVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPL 120

Query: 121 RGEVDTDSDSLGSAG-KWNGSACL--DESKENLGKSSLKI--PSTKSTTGAGYAYTSSED 180
           R + D DS+S    G KW     +  ++SKE   +SS +I    T ST+  G  Y +S+D
Sbjct: 121 RSDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGL-YITSDD 180

Query: 181 EDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV 221
           EDVCPTCLEEY SENPKIVTKC HHFHL CIYEWMERS+NCPVCGKV
Sbjct: 181 EDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKV 225

[Close]
BLAST of CmoCh04G029440 vs. TAIR10
Match: AT5G38895.3 (AT5G38895.3 RING/U-box superfamily protein)

HSP 1 Score: 261.9 bits (668), Expect = 4.1e-70
Identity = 123/221 (55.66%), Postives = 155/221 (70.14%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGA CCC  +D FE YVNPN+S+ RNC CL+CF+Q+F++ Y  +F RG +HP+ S+++ A
Sbjct: 106 MGAFCCCFQVDLFESYVNPNTSITRNCPCLNCFLQSFMDLYASLFSRGGMHPIPSTVETA 165

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           T M+S ++ D+SLS +Y SPP PLPYDADPRY R           KGSSH  EESEPLRG
Sbjct: 166 TVMNSTTALDDSLSSVYHSPPTPLPYDADPRYFRF---------VKGSSHSGEESEPLRG 225

Query: 121 EVDTDSDSLGSAG-KWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPT 180
           + +  S++LG  G KW+ S   D SKE   K S     +K+  G    Y  S+DED+CPT
Sbjct: 226 DTEMSSEALGDGGAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYYADSDDEDICPT 285

Query: 181 CLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV 221
           CL++YT ENPKI+TKC HHFHL CIYEWMERS+ CPVCGKV
Sbjct: 286 CLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKV 317

[Close]
BLAST of CmoCh04G029440 vs. TAIR10
Match: AT5G41350.1 (AT5G41350.1 RING/U-box superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-16
Identity = 67/231 (29.00%), Postives = 96/231 (41.56%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG  CCC S    +    P    Y   T                    E  P+SS+    
Sbjct: 1   MGGCCCCSSSRRADVDNGPAYYYYPRAT-------------------EERVPLSSAHNRT 60

Query: 61  TSMSSA------SSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDG----LISRREKGSSH 120
           +S  S       ++ + S  + Y  PP P P+D      +    G     +  RE     
Sbjct: 61  SSAISTGVVVVDTNLETSSPDAYIPPPLPTPFDVPIGIPQTPASGEEATCVDIREVSVDS 120

Query: 121 LHEESEPLRGEVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTG--AGYAY 180
            + ES     +   D  +LG       + C  +  ++  ++ + + ST+      +   +
Sbjct: 121 ANTES----AQETVDGITLGVP-----TTCSHKETDSKIQTEIDLESTEEIDPKLSKAVF 180

Query: 181 TSSEDEDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGK 220
              E+E+ CP CLEEY  ENPK+V KC HHFHL CI EWMERS+ CPVC K
Sbjct: 181 IPIEEEEDCPICLEEYDIENPKLVAKCDHHFHLACILEWMERSETCPVCNK 203

[Close]
BLAST of CmoCh04G029440 vs. TAIR10
Match: AT4G00335.1 (AT4G00335.1 RING-H2 finger B1A)

HSP 1 Score: 79.0 bits (193), Expect = 4.9e-15
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 1 

Query: 124 TDSDSLGSAGKWNGSACLDESK-ENLGKSSLK-------IPSTKS--TTGAGYAYTSSED 183
           TDS+S+   G+ +GS+    +  E+LG+S  K       +   KS  +   G      E+
Sbjct: 78  TDSESI--KGRMSGSSFETLATCEDLGESDCKTLASSVILSPRKSDFSKHQGLKILVDEE 137

Query: 184 EDVCPTCLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGK 220
           ED CP C E+Y  ENP++ TKC H FHL C+ EW+ERSD CP+C K
Sbjct: 138 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDK 181

[Close]
BLAST of CmoCh04G029440 vs. NCBI nr
Match: gi|659118970|ref|XP_008459404.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo])

HSP 1 Score: 431.4 bits (1108), Expect = 1.1e-117
Identity = 205/219 (93.61%), Postives = 213/219 (97.26%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCCLS++DFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVH VSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           TSM+S +STDNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           EVDTDSDSLGSAGKWNGSACL+ESKENLGKSSLK PSTKST+G GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGK 220
           LEEYTSENPKIVTKC HHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of CmoCh04G029440 vs. NCBI nr
Match: gi|449447440|ref|XP_004141476.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis sativus])

HSP 1 Score: 424.5 bits (1090), Expect = 1.4e-115
Identity = 203/219 (92.69%), Postives = 211/219 (96.35%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCCLS++DFEDYVNPNSSVYRNCTCLSCFIQ+FLNAYTLIFRRGEVH VSSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
           TSM+S +STDNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           EVDTDSDSLGS GK NGSACL+ESKENLGKSSLK PSTKST+G GYAYTSSEDEDVCPTC
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGK 220
           LEEYTSENPKIVTKC HHFHLGCIYEWMERSDNCPVCGK
Sbjct: 181 LEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 219

[Close]
BLAST of CmoCh04G029440 vs. NCBI nr
Match: gi|658013032|ref|XP_008341811.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Malus domestica])

HSP 1 Score: 364.4 bits (934), Expect = 1.7e-97
Identity = 167/220 (75.91%), Postives = 191/220 (86.82%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG+VCCCL+ +DFEDYVNPNSS YR+C CL+CF+QNFLN YT +FRRGEVH + SSIQGA
Sbjct: 1   MGSVCCCLNSEDFEDYVNPNSSAYRDCACLNCFLQNFLNVYTSLFRRGEVHSIPSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            SM+S++S DNSLS++YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSH HEE+EPLR 
Sbjct: 61  ASMNSSASLDNSLSDMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHSHEEAEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           + D DS+SL +  KWNGS C D SKE+  KSS+K  S K+TTG G  Y+SSEDEDVCPTC
Sbjct: 121 DTDADSESLSTGEKWNGSTCEDGSKEHRSKSSMKFSSAKATTGIGNFYSSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV 221
           LEEYT ENPKI+TKC HHFHLGCIYEWMERS++CPVCGKV
Sbjct: 181 LEEYTHENPKIITKCSHHFHLGCIYEWMERSESCPVCGKV 220

[Close]
BLAST of CmoCh04G029440 vs. NCBI nr
Match: gi|703109475|ref|XP_010099304.1| (E3 ubiquitin-protein ligase [Morus notabilis])

HSP 1 Score: 362.5 bits (929), Expect = 6.3e-97
Identity = 168/220 (76.36%), Postives = 189/220 (85.91%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MGAVCCC S++DFEDYVNPNSSVYRNC CLSCF+QNF+N YT +FRR EVH + SSIQGA
Sbjct: 1   MGAVCCCFSVEDFEDYVNPNSSVYRNCICLSCFLQNFINVYTSLFRRSEVHSLPSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            S+SS +S DNSL+++YRSPPRPLPYDADPRY RLQRDGLISRREKG+SH HEESEPLR 
Sbjct: 61  ASLSSTTSLDNSLADMYRSPPRPLPYDADPRYFRLQRDGLISRREKGTSHSHEESEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           + D DS+SL +A KWN S C D SKE+  KSSLK+  TK+TTG G  YTSSEDEDVCPTC
Sbjct: 121 DTDADSESLSTADKWNESVCEDGSKEHRSKSSLKLSVTKTTTGVGNIYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV 221
           LEEYT ENPKI+TKC HHFHL CIYEWMERS++CPVCGKV
Sbjct: 181 LEEYTPENPKIMTKCSHHFHLACIYEWMERSESCPVCGKV 220

[Close]
BLAST of CmoCh04G029440 vs. NCBI nr
Match: gi|658044296|ref|XP_008357796.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Malus domestica])

HSP 1 Score: 361.7 bits (927), Expect = 1.1e-96
Identity = 168/220 (76.36%), Postives = 187/220 (85.00%), Query Frame = 1 

Query: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60
           MG+VCCCL+ +DFEDYVNPNSS YR C CL CF+QNFLN YT +FRRGEVH + SSIQGA
Sbjct: 1   MGSVCCCLNAEDFEDYVNPNSSAYRECVCLRCFLQNFLNVYTSLFRRGEVHSIXSSIQGA 60

Query: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120
            SM+S+ S DNSLS++YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSH HEE+EPLR 
Sbjct: 61  ASMNSSXSLDNSLSDMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHSHEEAEPLRS 120

Query: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTC 180
           + D DS+SL +  KWNGSAC D S E+  KSS K+ S K TTG G  YTSSEDEDVCPTC
Sbjct: 121 DTDADSESLSTGEKWNGSACEDGSXEHRSKSSXKLSSAKXTTGVGNFYTSSEDEDVCPTC 180

Query: 181 LEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKV 221
           LEEYT ENPKI+TKC HHFHLGCIYEWMERS++CPVCGKV
Sbjct: 181 LEEYTPENPKIMTKCSHHFHLGCIYEWMERSESCPVCGKV 220

The following BLAST results are available for this feature:
BLAST of CmoCh04G029440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RING3_ARATH3.5e-7160.53E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 ... [more]
RHB1A_ARATH8.7e-1441.51Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana GN=RHB1A PE=2... [more]
RHF1A_ARATH5.0e-0938.16E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1[more]
BLAST of CmoCh04G029440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSH8_CUCSA9.4e-11692.69Uncharacterized protein OS=Cucumis sativus GN=Csa_5G642120 PE=4 SV=1[more]
W9RK62_9ROSA4.4e-9776.36E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_018166 PE=4 SV=1[more]
A0A067JND7_JATCU2.2e-9676.26Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25599 PE=4 SV=1[more]
M5WZ55_PRUPE8.3e-9675.45Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011007mg PE=4 SV=1[more]
A0A0B2REM2_GLYSO3.2e-9575.91E3 ubiquitin-protein ligase OS=Glycine soja GN=glysoja_037819 PE=4 SV=1[more]
BLAST of CmoCh04G029440 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G02290.12.0e-7260.53 RING/U-box superfamily protein[more]
AT5G15790.13.7e-7159.91 RING/U-box superfamily protein[more]
AT5G38895.34.1e-7055.66 RING/U-box superfamily protein[more]
AT5G41350.12.0e-1629.00 RING/U-box superfamily protein[more]
AT4G00335.14.9e-1541.51 RING-H2 finger B1A[more]
BLAST of CmoCh04G029440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118970|ref|XP_008459404.1|1.1e-11793.61PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo][more]
gi|449447440|ref|XP_004141476.1|1.4e-11592.69PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis sativus][more]
gi|658013032|ref|XP_008341811.1|1.7e-9775.91PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Malus domestica][more]
gi|703109475|ref|XP_010099304.1|6.3e-9776.36E3 ubiquitin-protein ligase [Morus notabilis][more]
gi|658044296|ref|XP_008357796.1|1.1e-9676.36PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G029440.1CmoCh04G029440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 176..217
score: 1.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 177..217
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 177..217
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 172..217
score: 1.4
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 1..220
score: 2.8E
NoneNo IPR availablePANTHERPTHR22763:SF34SUBFAMILY NOT NAMEDcoord: 1..220
score: 2.8E
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 172..222
score: 2.25