CmoCh13G010180 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G010180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaAnng11020D protein
Location	Cmo_Chr13 : 8630623 .. 8631514 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGGTGCCCATCCTCGTCGTCTCCCATTTTCTGATTCTCTCTCTGTTTTTCATTTTGGGAATTCAATTTTGTTTTGCAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTGGTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGAGGAAGATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAAAATGTGGGATTTGATTTGTGAGAGTATATTTAAAATCTTATATTATATTTAATTAATCAAACGCTTGAATTAAGGTAAGAAAAAAGAAAAAAAGAAAAAAGGAAAATGTCACCTTTATCGTGTAGGTGACCCTCTTTTTAATTTCCTTTTAATCATCTCACAGGTTACTTCTATCTTCTTTTTTTCTTTTTCAAAATAATAATAATAATAAAATAACACTCAGATCTTCATTTTTGAAGCTTTGGAGAT

mRNA sequence

ATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTGGTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGAGGAAGATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAAAATGTGGGATTTGATTTGTGAGAGTATATTTAAAATCTTATATTATATTTAATTAATCAAACGCTTGAATTAAGGTAAGAAAAAAGAAAAAAAGAAAAAAGGAAAATGTCACCTTTATCGTGTAGGTGACCCTCTTTTTAATTTCCTTTTAATCATCTCACAGGTTACTTCTATCTTCTTTTTTTCTTTTTCAAAATAATAATAATAATAAAATAACACTCAGATCTTCATTTTTGAAGCTTTGGAGAT

Coding sequence (CDS)

ATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTGGTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGAGGAAGATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAA

Homology

[Close]

BLAST of CmoCh13G010180 vs. Swiss-Prot
Match: Y3795_ARATH (Uncharacterized protein At3g17950 OS=Arabidopsis thaliana GN=Y-3 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37
Identity = 106/205 (51.71%), Postives = 128/205 (62.44%), Query Frame = 1


Query: 12  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAA 71
           PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+       A 
Sbjct: 7   PSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAI 66

Query: 72  TAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASL 131
           + A+   +R++ + KR  + +      R+R+WWR CRDD       G+       K +SL
Sbjct: 67  SRASSSNARRNHQRKRPPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSL 126

Query: 132 GEFLEVERRFGDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQTE---- 189
           GE+LEVERRFGD A + +A  +LE  V A   DQQ     R+LFADGRVLPPA  E    
Sbjct: 127 GEYLEVERRFGDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTG 186

[Close]

BLAST of CmoCh13G010180 vs. TrEMBL
Match: A0A0A0LQI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042870 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 3.7e-93
Identity = 178/188 (94.68%), Postives = 180/188 (95.74%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 330 MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 389

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 390 RDQHTAATVTAGGGSRKSKKTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 449

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLT
Sbjct: 450 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 509

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 510 GICSGGAG 517

[Close]

BLAST of CmoCh13G010180 vs. TrEMBL
Match: M5WDP9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015800mg PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.4e-62
Identity = 135/199 (67.84%), Postives = 153/199 (76.88%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           ML+P NDLLPPPSSPTNSSISSSDLDTESTGSFFHDRST+LGTLMGVSFPAITFR PSQ 
Sbjct: 1   MLDPRNDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTTLGTLMGVSFPAITFRAPSQQ 60

Query: 61  RDQHAA-------ATAAAGGGSRKSKKPKRKTTAAPA---LVADRKRRWWRLCRDDGVKP 120
           R    A         + +G GSRK+KKPK+K  AA +   +VA+R+RRWWRLCRDD  KP
Sbjct: 61  RRDPQANSNNNNNMASTSGSGSRKTKKPKKKNAAASSAVGVVAERRRRWWRLCRDDCTKP 120

Query: 121 ASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEE---DTS 180
           ASLGEFLEVERRFGD AF+  A +LEGV+   Q RNGR LFADGRVLPP+  ++    +S
Sbjct: 121 ASLGEFLEVERRFGDNAFYNTAAELEGVM-VGQPRNGRLLFADGRVLPPSNVDDRIATSS 180

Query: 181 AAGALCRFSVSLTGICSGG 187
            AG L RF VS+T ICSGG
Sbjct: 181 TAGVLSRFPVSITAICSGG 198

[Close]

BLAST of CmoCh13G010180 vs. TrEMBL
Match: W9R7P5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008807 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.3e-61
Identity = 139/194 (71.65%), Postives = 152/194 (78.35%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           ML+PANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRST+LGTLMGVSFPAI FR PSQ 
Sbjct: 1   MLDPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTTLGTLMGVSFPAIAFRAPSQR 60

Query: 61  RDQHAAATAA------AGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDG-VKPASL 120
           R +   +T+A      AG GSRK +  K KT  A A+VA+R RRWW LCRDDG  KPASL
Sbjct: 61  RRETPISTSAAQSSVVAGAGSRKCR--KAKTKKAVAVVAERTRRWWSLCRDDGDTKPASL 120

Query: 121 GEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDT--SAAGA 180
           GEFLEVERRFGDGAFFG A + E  V   +QRNGR LFADGRVLPPA   ++T  S+ GA
Sbjct: 121 GEFLEVERRFGDGAFFGAATEFERAV-VGEQRNGRVLFADGRVLPPAVDVDETTSSSDGA 180

Query: 181 LCRFSVSLTGICSG 186
           LCRF V LTGICSG
Sbjct: 181 LCRFPVYLTGICSG 191

[Close]

BLAST of CmoCh13G010180 vs. TrEMBL
Match: B9SXS7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0569680 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-60
Identity = 136/209 (65.07%), Postives = 153/209 (73.21%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           ML+P ND+LPPPSSPTNSSISSSDLDTESTGSFFHDRST+LGTLMGV+FPAITFR PSQ+
Sbjct: 1   MLDPTNDILPPPSSPTNSSISSSDLDTESTGSFFHDRSTTLGTLMGVTFPAITFRAPSQS 60

Query: 61  RDQH----------AAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKP 120
           RD H          A+ T+ A   ++K+KK KR       L   R+RRWWRLC D   KP
Sbjct: 61  RDNHVTAGGGVAAIASTTSTAANRNKKNKKNKRSP-----LELQRRRRWWRLCSDGESKP 120

Query: 121 ASLGEFLEVERRFGDGAFFGN-AVDLEGVVSADQQ-------RNGRSLFADGRVLPPAQ- 180
           ASLGEFLEVERRFGDGAFFGN A +LEGV++A QQ       + G  LFADGRVLPPA  
Sbjct: 121 ASLGEFLEVERRFGDGAFFGNAAAELEGVMAAQQQQQEQEQHQQGNGLFADGRVLPPASA 180

Query: 181 --TEEDTSAAGALCRFSVSLTGICSGGAG 189
              ++ TS AG LCRF VSLTGICSGG G
Sbjct: 181 QVVDDGTSTAGILCRFPVSLTGICSGGVG 204

[Close]

BLAST of CmoCh13G010180 vs. TrEMBL
Match: D7SJD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02120 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.3e-60
Identity = 135/194 (69.59%), Postives = 147/194 (75.77%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           ML+PANDL+PP SSPT SS+SSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR  SQ+
Sbjct: 1   MLDPANDLIPP-SSPTISSVSSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAQSQH 60

Query: 61  RDQH------AAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLG 120
           R+          A A  GGG RKS+K K+    A  LVA+R+RRWWRLCRDD  KPASLG
Sbjct: 61  REAQPVPAASGVAVAGRGGGGRKSRKVKK----ALGLVAERRRRWWRLCRDDAAKPASLG 120

Query: 121 EFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCR 180
           EFLEVERRFGD AFFG A +LEGVV+  Q  NGR LFADGRVLPP Q EE  S   +LCR
Sbjct: 121 EFLEVERRFGDVAFFGAAAELEGVVA--QPENGRVLFADGRVLPPPQAEESPSTVSSLCR 180

Query: 181 FSVSLTGICSGGAG 189
           F VSLTGI S   G
Sbjct: 181 FPVSLTGIFSSSTG 187

[Close]

BLAST of CmoCh13G010180 vs. TAIR10
Match: AT3G17950.1 (AT3G17950.1 unknown protein)

HSP 1 Score: 157.9 bits (398), Expect = 6.1e-39
Identity = 106/205 (51.71%), Postives = 128/205 (62.44%), Query Frame = 1


Query: 12  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAA 71
           PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+       A 
Sbjct: 7   PSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAI 66

Query: 72  TAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASL 131
           + A+   +R++ + KR  + +      R+R+WWR CRDD       G+       K +SL
Sbjct: 67  SRASSSNARRNHQRKRPPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSL 126

Query: 132 GEFLEVERRFGDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQTE---- 189
           GE+LEVERRFGD A + +A  +LE  V A   DQQ     R+LFADGRVLPPA  E    
Sbjct: 127 GEYLEVERRFGDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTG 186

[Close]

BLAST of CmoCh13G010180 vs. NCBI nr
Match: gi|659066884|ref|XP_008465627.1| (PREDICTED: uncharacterized protein At3g17950 [Cucumis melo])

HSP 1 Score: 353.2 bits (905), Expect = 2.8e-94
Identity = 180/188 (95.74%), Postives = 182/188 (96.81%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAATVTAGGGSRKSKKTKRKTTTAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQTEEDTSA GALCRFSVSLT
Sbjct: 121 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of CmoCh13G010180 vs. NCBI nr
Match: gi|778657418|ref|XP_011650866.1| (PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 5.2e-93
Identity = 178/188 (94.68%), Postives = 180/188 (95.74%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 92  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 151

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 152 RDQHTAATVTAGGGSRKSKKTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 211

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLT
Sbjct: 212 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 271

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 272 GICSGGAG 279

[Close]

BLAST of CmoCh13G010180 vs. NCBI nr
Match: gi|700209084|gb|KGN64180.1| (hypothetical protein Csa_1G042870 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 5.2e-93
Identity = 178/188 (94.68%), Postives = 180/188 (95.74%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 330 MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 389

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 390 RDQHTAATVTAGGGSRKSKKTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 449

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLT
Sbjct: 450 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 509

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 510 GICSGGAG 517

[Close]

BLAST of CmoCh13G010180 vs. NCBI nr
Match: gi|778657421|ref|XP_011650870.1| (PREDICTED: uncharacterized protein At3g17950 isoform X3 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 5.2e-93
Identity = 178/188 (94.68%), Postives = 180/188 (95.74%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 87  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 146

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 147 RDQHTAATVTAGGGSRKSKKTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 206

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLT
Sbjct: 207 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 266

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 267 GICSGGAG 274

[Close]

BLAST of CmoCh13G010180 vs. NCBI nr
Match: gi|778657415|ref|XP_011650862.1| (PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 5.2e-93
Identity = 178/188 (94.68%), Postives = 180/188 (95.74%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 112 MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 171

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 172 RDQHTAATVTAGGGSRKSKKTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 231

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLT
Sbjct: 232 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 291

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 292 GICSGGAG 299

The following BLAST results are available for this feature:

BLAST of CmoCh13G010180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3795_ARATH	1.1e-37	51.71	Uncharacterized protein At3g17950 OS=Arabidopsis thaliana GN=Y-3 PE=1 SV=1	[more]

BLAST of CmoCh13G010180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQI1_CUCSA	3.7e-93	94.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042870 PE=4 SV=1	[more]
M5WDP9_PRUPE	4.4e-62	67.84	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015800mg PE=4 SV=1	[more]
W9R7P5_9ROSA	1.3e-61	71.65	Uncharacterized protein OS=Morus notabilis GN=L484_008807 PE=4 SV=1	[more]
B9SXS7_RICCO	1.1e-60	65.07	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0569680 PE=4 SV=1	[more]
D7SJD6_VITVI	5.3e-60	69.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02120 PE=4 SV=...	[more]

BLAST of CmoCh13G010180 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17950.1	6.1e-39	51.71	unknown protein	[more]

BLAST of CmoCh13G010180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066884\|ref\|XP_008465627.1\|	2.8e-94	95.74	PREDICTED: uncharacterized protein At3g17950 [Cucumis melo]	[more]
gi\|778657418\|ref\|XP_011650866.1\|	5.2e-93	94.68	PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis sativus]	[more]
gi\|700209084\|gb\|KGN64180.1\|	5.2e-93	94.68	hypothetical protein Csa_1G042870 [Cucumis sativus]	[more]
gi\|778657421\|ref\|XP_011650870.1\|	5.2e-93	94.68	PREDICTED: uncharacterized protein At3g17950 isoform X3 [Cucumis sativus]	[more]
gi\|778657415\|ref\|XP_011650862.1\|	5.2e-93	94.68	PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G010180.1	CmoCh13G010180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33544	FAMILY NOT NAMED	coord: 1..188 score: 4.2
None	No IPR available	PANTHER	PTHR33544:SF5	SUBFAMILY NOT NAMED	coord: 1..188 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G010180	Cucsa.121990	Cucumber (Gy14) v1	cgycmoB0314
CmoCh13G010180	CmaCh13G009840	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G010180	CmaCh18G000770	Cucurbita maxima (Rimu)	cmacmoB399
CmoCh13G010180	Cla018449	Watermelon (97103) v1	cmowmB194
CmoCh13G010180	Csa1G042870	Cucumber (Chinese Long) v2	cmocuB202
CmoCh13G010180	MELO3C002138	Melon (DHL92) v3.5.1	cmomeB180
CmoCh13G010180	ClCG04G010570	Watermelon (Charleston Gray)	cmowcgB191
CmoCh13G010180	CSPI01G07270	Wild cucumber (PI 183967)	cmocpiB204
CmoCh13G010180	Lsi02G002410	Bottle gourd (USVL1VR-Ls)	cmolsiB198
CmoCh13G010180	Cp4.1LG20g01630	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G010180	MELO3C002138.2	Melon (DHL92) v3.6.1	cmomedB202
CmoCh13G010180	Cla97C04G077390	Watermelon (97103) v2	cmowmbB216
CmoCh13G010180	Bhi08G001082	Wax gourd	cmowgoB0258
CmoCh13G010180	CsGy1G007120	Cucumber (Gy14) v2	cgybcmoB067
CmoCh13G010180	Carg04853	Silver-seed gourd	carcmoB0526

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G010180	CmoCh18G000590	Cucurbita moschata (Rifu)	cmocmoB171

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G010180	Silver-seed gourd	carcmoB0671
CmoCh13G010180	Cucumber (Chinese Long) v3	cmocucB0234
CmoCh13G010180	Cucurbita pepo (Zucchini)	cmocpeB183