ClCG04G010570 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G010570
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr04 : 25564941 .. 25565792 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCTCCTTCCTTTCTCTCTCCTCCATTTCCATTTCCAAATCCTTAATCCTTTCTCTCTCCTCTTCTTTGTTTTTTTTCTCATTCAAATTTCAGTCTCAGCTTCTCTATACAGATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCTTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACCGAGGTGCCCCACCGTCGCCTTTCTCCCATTTTCTCATTCTTTAATCTGTTTTTGATTTTGGGAATTCAATTCTGTTTTGCAGTCGACGGGTTCGTTCTTCCATGACAGGAGCACGAGCTTGGGAACTCTAATGGGGGTCAGCTTTCCGGCGATTACTTTCCGAGTGCCCTCCCAGAACAGAGATCAACACGCCGCCGCGACTGCCGCCACAGGCGGCGGTTCTCGGAAAAGCAAGAAGACGAAGAGAAAAACGACAACGGTGCCGGCACTGGTTGCAGATCGGAAACGGCGATGGTGGAGGCTTTGCAGGGATGACGGCGTTAAGCCGGCGTCTCTGGGTGAGTTTCTCGAAGTAGAACGGAGATTTGGGGATGGTGCTTTCTACGGCAACGCGGTGGATCTGGAAGGCGTGGTTGCGACGGATCAACAGAGGAATGGCCGGTCTTTGTTCGCAGATGGAAGAGTTCTTCCGCCGGCACAAACCGAGGAAGATACATCGGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTTACCGGAATATGCAGCGGCGGTGCCGGTTAAAATGTGGGATTTGATTTGTCCATTATGTTTAAAATGTTATATTATATTTAATTAATCAAATGCTTTAATTAATGTGGAAGAAAAAAAGAAA

mRNA sequence

ATTTTCTCCTTCCTTTCTCTCTCCTCCATTTCCATTTCCAAATCCTTAATCCTTTCTCTCTCCTCTTCTTTGTTTTTTTTCTCATTCAAATTTCAGTCTCAGCTTCTCTATACAGATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCTTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACCGAGTCGACGGGTTCGTTCTTCCATGACAGGAGCACGAGCTTGGGAACTCTAATGGGGGTCAGCTTTCCGGCGATTACTTTCCGAGTGCCCTCCCAGAACAGAGATCAACACGCCGCCGCGACTGCCGCCACAGGCGGCGGTTCTCGGAAAAGCAAGAAGACGAAGAGAAAAACGACAACGGTGCCGGCACTGGTTGCAGATCGGAAACGGCGATGGTGGAGGCTTTGCAGGGATGACGGCGTTAAGCCGGCGTCTCTGGGTGAGTTTCTCGAAGTAGAACGGAGATTTGGGGATGGTGCTTTCTACGGCAACGCGGTGGATCTGGAAGGCGTGGTTGCGACGGATCAACAGAGGAATGGCCGGTCTTTGTTCGCAGATGGAAGAGTTCTTCCGCCGGCACAAACCGAGGAAGATACATCGGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTTACCGGAATATGCAGCGGCGGTGCCGGTTAAAATGTGGGATTTGATTTGTCCATTATGTTTAAAATGTTATATTATATTTAATTAATCAAATGCTTTAATTAATGTGGAAGAAAAAAAGAAA

Coding sequence (CDS)

ATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCTTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACCGAGTCGACGGGTTCGTTCTTCCATGACAGGAGCACGAGCTTGGGAACTCTAATGGGGGTCAGCTTTCCGGCGATTACTTTCCGAGTGCCCTCCCAGAACAGAGATCAACACGCCGCCGCGACTGCCGCCACAGGCGGCGGTTCTCGGAAAAGCAAGAAGACGAAGAGAAAAACGACAACGGTGCCGGCACTGGTTGCAGATCGGAAACGGCGATGGTGGAGGCTTTGCAGGGATGACGGCGTTAAGCCGGCGTCTCTGGGTGAGTTTCTCGAAGTAGAACGGAGATTTGGGGATGGTGCTTTCTACGGCAACGCGGTGGATCTGGAAGGCGTGGTTGCGACGGATCAACAGAGGAATGGCCGGTCTTTGTTCGCAGATGGAAGAGTTCTTCCGCCGGCACAAACCGAGGAAGATACATCGGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTTACCGGAATATGCAGCGGCGGTGCCGGTTAA

Protein sequence

MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

Homology

[Close]

BLAST of ClCG04G010570 vs. Swiss-Prot
Match: Y3795_ARATH (Uncharacterized protein At3g17950 OS=Arabidopsis thaliana GN=Y-3 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.6e-41
Identity = 106/205 (51.71%), Postives = 124/205 (60.49%), Query Frame = 1


Query: 12  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAA 71
           PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+       A 
Sbjct: 7   PSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAI 66

Query: 72  TAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDD-------GV-------KPASL 131
           + A+   +R++ + KR  +        R+R+WWR CRDD       G+       K +SL
Sbjct: 67  SRASSSNARRNHQRKRPPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSL 126

Query: 132 GEFLEVERRFGDGAFYGNA-VDLEGVVAT---DQQ--RNGRSLFADGRVLPPAQTE---- 189
           GE+LEVERRFGD A Y +A  +LE  V     DQQ     R+LFADGRVLPPA  E    
Sbjct: 127 GEYLEVERRFGDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTG 186

[Close]

BLAST of ClCG04G010570 vs. TrEMBL
Match: A0A0A0LQI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042870 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 7.1e-97
Identity = 178/188 (94.68%), Postives = 178/188 (94.68%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 330 MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 389

Query: 61  RDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT   GGGSRKSKKTKRKTT  PALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 390 RDQHTAATVTAGGGSRKSKKTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 449

Query: 121 RRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAFYGNAVDLEGVVA DQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLT
Sbjct: 450 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 509

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 510 GICSGGAG 517

[Close]

BLAST of ClCG04G010570 vs. TrEMBL
Match: M5WDP9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015800mg PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.7e-64
Identity = 133/199 (66.83%), Postives = 151/199 (75.88%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           ML+P NDLLPPPSSPTNSSISSSDLDTESTGSFFHDRST+LGTLMGVSFPAITFR PSQ 
Sbjct: 1   MLDPRNDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTTLGTLMGVSFPAITFRAPSQQ 60

Query: 61  RDQHAA-------ATAATGGGSRKSKKTKRK---TTTVPALVADRKRRWWRLCRDDGVKP 120
           R    A         + +G GSRK+KK K+K    ++   +VA+R+RRWWRLCRDD  KP
Sbjct: 61  RRDPQANSNNNNNMASTSGSGSRKTKKPKKKNAAASSAVGVVAERRRRWWRLCRDDCTKP 120

Query: 121 ASLGEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEE---DTS 180
           ASLGEFLEVERRFGD AFY  A +LEGV+   Q RNGR LFADGRVLPP+  ++    +S
Sbjct: 121 ASLGEFLEVERRFGDNAFYNTAAELEGVM-VGQPRNGRLLFADGRVLPPSNVDDRIATSS 180

Query: 181 AAGALCRFSVSLTGICSGG 187
            AG L RF VS+T ICSGG
Sbjct: 181 TAGVLSRFPVSITAICSGG 198

[Close]

BLAST of ClCG04G010570 vs. TrEMBL
Match: W9R7P5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008807 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.9e-64
Identity = 136/194 (70.10%), Postives = 150/194 (77.32%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           ML+PANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRST+LGTLMGVSFPAI FR PSQ 
Sbjct: 1   MLDPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTTLGTLMGVSFPAIAFRAPSQR 60

Query: 61  RDQHAAATAA------TGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDDG-VKPASL 120
           R +   +T+A       G GSRK +K K K     A+VA+R RRWW LCRDDG  KPASL
Sbjct: 61  RRETPISTSAAQSSVVAGAGSRKCRKAKTKKAV--AVVAERTRRWWSLCRDDGDTKPASL 120

Query: 121 GEFLEVERRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDT--SAAGA 180
           GEFLEVERRFGDGAF+G A + E  V   +QRNGR LFADGRVLPPA   ++T  S+ GA
Sbjct: 121 GEFLEVERRFGDGAFFGAATEFERAV-VGEQRNGRVLFADGRVLPPAVDVDETTSSSDGA 180

Query: 181 LCRFSVSLTGICSG 186
           LCRF V LTGICSG
Sbjct: 181 LCRFPVYLTGICSG 191

[Close]

BLAST of ClCG04G010570 vs. TrEMBL
Match: A0A151T345_CAJCA (Uncharacterized protein At3g17950 family OS=Cajanus cajan GN=KK1_015938 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-63
Identity = 136/194 (70.10%), Postives = 158/194 (81.44%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           ML+PA +L+PPPSSPT SSISSSDLDTESTGSFFHDRST+LGTLMGV+FP I FRVPSQN
Sbjct: 1   MLDPATELVPPPSSPTISSISSSDLDTESTGSFFHDRSTTLGTLMGVNFPTIAFRVPSQN 60

Query: 61  RDQHAAATAATGGGSRK----SKKTKRKTTTVPALVADRKRRWWRLCRDDGVKPASLGEF 120
           R+ ++AA AA  GGSR+    +KK K+ T+TV A  A+R+RRWW+LCRD   KPASLGEF
Sbjct: 61  RNPNSAAEAA--GGSRRIAAAAKKKKKATSTVTA--AERRRRWWQLCRDGDSKPASLGEF 120

Query: 121 LEVERRFGDGAFYGNAVDLEGVVATDQQRNG-RSLFADGRVL-PPAQTEEDTSAAGALCR 180
           LEVERRFGDGAFYG A +LEG+VA  QQRNG R LFADGRVL PP+  ++  +AA +LC 
Sbjct: 121 LEVERRFGDGAFYGTAAELEGMVAGHQQRNGSRVLFADGRVLPPPSDVDDGATAAESLCN 180

Query: 181 -FSVSLTGICSGGA 188
            F VSL GICSGGA
Sbjct: 181 MFPVSLAGICSGGA 190

[Close]

BLAST of ClCG04G010570 vs. TrEMBL
Match: B9SXS7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0569680 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.8e-63
Identity = 134/209 (64.11%), Postives = 151/209 (72.25%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           ML+P ND+LPPPSSPTNSSISSSDLDTESTGSFFHDRST+LGTLMGV+FPAITFR PSQ+
Sbjct: 1   MLDPTNDILPPPSSPTNSSISSSDLDTESTGSFFHDRSTTLGTLMGVTFPAITFRAPSQS 60

Query: 61  RDQH----------AAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDDGVKP 120
           RD H          A+ T+     ++K+KK KR       L   R+RRWWRLC D   KP
Sbjct: 61  RDNHVTAGGGVAAIASTTSTAANRNKKNKKNKRS-----PLELQRRRRWWRLCSDGESKP 120

Query: 121 ASLGEFLEVERRFGDGAFYGN-AVDLEGVVATDQQ-------RNGRSLFADGRVLPPAQ- 180
           ASLGEFLEVERRFGDGAF+GN A +LEGV+A  QQ       + G  LFADGRVLPPA  
Sbjct: 121 ASLGEFLEVERRFGDGAFFGNAAAELEGVMAAQQQQQEQEQHQQGNGLFADGRVLPPASA 180

Query: 181 --TEEDTSAAGALCRFSVSLTGICSGGAG 189
              ++ TS AG LCRF VSLTGICSGG G
Sbjct: 181 QVVDDGTSTAGILCRFPVSLTGICSGGVG 204

[Close]

BLAST of ClCG04G010570 vs. TAIR10
Match: AT3G17950.1 (AT3G17950.1 unknown protein)

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-42
Identity = 106/205 (51.71%), Postives = 124/205 (60.49%), Query Frame = 1


Query: 12  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAA 71
           PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+       A 
Sbjct: 7   PSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAI 66

Query: 72  TAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDD-------GV-------KPASL 131
           + A+   +R++ + KR  +        R+R+WWR CRDD       G+       K +SL
Sbjct: 67  SRASSSNARRNHQRKRPPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSL 126

Query: 132 GEFLEVERRFGDGAFYGNA-VDLEGVVAT---DQQ--RNGRSLFADGRVLPPAQTE---- 189
           GE+LEVERRFGD A Y +A  +LE  V     DQQ     R+LFADGRVLPPA  E    
Sbjct: 127 GEYLEVERRFGDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTG 186

[Close]

BLAST of ClCG04G010570 vs. TAIR10
Match: AT5G02440.1 (AT5G02440.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-06
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 1


Query: 14  SPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGV-SFPAITFRVPSQNRDQHAAA 68
           SP+ SS SSSDLD++S GSFF DRS +LG L+G+ SF  ++ R      DQ  AA
Sbjct: 47  SPSPSSQSSSDLDSQSMGSFFRDRSYTLGNLIGISSFLELSRRSNRTRNDQTGAA 101

[Close]

BLAST of ClCG04G010570 vs. NCBI nr
Match: gi|659066884|ref|XP_008465627.1| (PREDICTED: uncharacterized protein At3g17950 [Cucumis melo])

HSP 1 Score: 365.9 bits (938), Expect = 4.1e-98
Identity = 180/188 (95.74%), Postives = 180/188 (95.74%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT   GGGSRKSKKTKRKTTT PALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAATVTAGGGSRKSKKTKRKTTTAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAFYGNAVDLEGVV  DQQRNGRSLFADGRVLPPAQTEEDTSA GALCRFSVSLT
Sbjct: 121 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of ClCG04G010570 vs. NCBI nr
Match: gi|778657418|ref|XP_011650866.1| (PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 1.0e-96
Identity = 178/188 (94.68%), Postives = 178/188 (94.68%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 92  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 151

Query: 61  RDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT   GGGSRKSKKTKRKTT  PALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 152 RDQHTAATVTAGGGSRKSKKTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 211

Query: 121 RRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAFYGNAVDLEGVVA DQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLT
Sbjct: 212 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 271

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 272 GICSGGAG 279

[Close]

BLAST of ClCG04G010570 vs. NCBI nr
Match: gi|700209084|gb|KGN64180.1| (hypothetical protein Csa_1G042870 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 1.0e-96
Identity = 178/188 (94.68%), Postives = 178/188 (94.68%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 330 MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 389

Query: 61  RDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT   GGGSRKSKKTKRKTT  PALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 390 RDQHTAATVTAGGGSRKSKKTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 449

Query: 121 RRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAFYGNAVDLEGVVA DQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLT
Sbjct: 450 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 509

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 510 GICSGGAG 517

[Close]

BLAST of ClCG04G010570 vs. NCBI nr
Match: gi|778657421|ref|XP_011650870.1| (PREDICTED: uncharacterized protein At3g17950 isoform X3 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 1.0e-96
Identity = 178/188 (94.68%), Postives = 178/188 (94.68%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 87  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 146

Query: 61  RDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT   GGGSRKSKKTKRKTT  PALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 147 RDQHTAATVTAGGGSRKSKKTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 206

Query: 121 RRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAFYGNAVDLEGVVA DQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLT
Sbjct: 207 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 266

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 267 GICSGGAG 274

[Close]

BLAST of ClCG04G010570 vs. NCBI nr
Match: gi|778657415|ref|XP_011650862.1| (PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 1.0e-96
Identity = 178/188 (94.68%), Postives = 178/188 (94.68%), Query Frame = 1


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 112 MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 171

Query: 61  RDQHAAATAATGGGSRKSKKTKRKTTTVPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT   GGGSRKSKKTKRKTT  PALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 172 RDQHTAATVTAGGGSRKSKKTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 231

Query: 121 RRFGDGAFYGNAVDLEGVVATDQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180
           RRFGDGAFYGNAVDLEGVVA DQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLT
Sbjct: 232 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 291

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 292 GICSGGAG 299

The following BLAST results are available for this feature:

BLAST of ClCG04G010570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3795_ARATH	3.6e-41	51.71	Uncharacterized protein At3g17950 OS=Arabidopsis thaliana GN=Y-3 PE=1 SV=1	[more]

BLAST of ClCG04G010570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQI1_CUCSA	7.1e-97	94.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042870 PE=4 SV=1	[more]
M5WDP9_PRUPE	4.7e-64	66.83	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015800mg PE=4 SV=1	[more]
W9R7P5_9ROSA	7.9e-64	70.10	Uncharacterized protein OS=Morus notabilis GN=L484_008807 PE=4 SV=1	[more]
A0A151T345_CAJCA	1.0e-63	70.10	Uncharacterized protein At3g17950 family OS=Cajanus cajan GN=KK1_015938 PE=4 SV=...	[more]
B9SXS7_RICCO	1.8e-63	64.11	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0569680 PE=4 SV=1	[more]

BLAST of ClCG04G010570 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17950.1	2.0e-42	51.71	unknown protein	[more]
AT5G02440.1	1.4e-06	52.73	unknown protein	[more]

BLAST of ClCG04G010570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066884\|ref\|XP_008465627.1\|	4.1e-98	95.74	PREDICTED: uncharacterized protein At3g17950 [Cucumis melo]	[more]
gi\|778657418\|ref\|XP_011650866.1\|	1.0e-96	94.68	PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis sativus]	[more]
gi\|700209084\|gb\|KGN64180.1\|	1.0e-96	94.68	hypothetical protein Csa_1G042870 [Cucumis sativus]	[more]
gi\|778657421\|ref\|XP_011650870.1\|	1.0e-96	94.68	PREDICTED: uncharacterized protein At3g17950 isoform X3 [Cucumis sativus]	[more]
gi\|778657415\|ref\|XP_011650862.1\|	1.0e-96	94.68	PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G010570.1	ClCG04G010570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33544	FAMILY NOT NAMED	coord: 1..188 score: 7.4
None	No IPR available	PANTHER	PTHR33544:SF5	SUBFAMILY NOT NAMED	coord: 1..188 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG04G010570	Csa1G042870	Cucumber (Chinese Long) v2	cuwcgB057
ClCG04G010570	MELO3C002138	Melon (DHL92) v3.5.1	mewcgB154
ClCG04G010570	Cla018449	Watermelon (97103) v1	wcgwmB255
ClCG04G010570	Cla97C04G077390	Watermelon (97103) v2	wcgwmbB200
ClCG04G010570	Bhi08G001082	Wax gourd	wcgwgoB401
ClCG04G010570	CSPI01G07270	Wild cucumber (PI 183967)	cpiwcgB059
ClCG04G010570	Cucsa.121990	Cucumber (Gy14) v1	cgywcgB190
ClCG04G010570	CmaCh13G009840	Cucurbita maxima (Rimu)	cmawcgB202
ClCG04G010570	CmaCh18G000770	Cucurbita maxima (Rimu)	cmawcgB363
ClCG04G010570	CmoCh13G010180	Cucurbita moschata (Rifu)	cmowcgB191
ClCG04G010570	CmoCh18G000590	Cucurbita moschata (Rifu)	cmowcgB357
ClCG04G010570	Lsi02G002410	Bottle gourd (USVL1VR-Ls)	lsiwcgB192
ClCG04G010570	Cp4.1LG20g01630	Cucurbita pepo (Zucchini)	cpewcgB471
ClCG04G010570	CsGy1G007120	Cucumber (Gy14) v2	cgybwcgB053
ClCG04G010570	MELO3C002138.2	Melon (DHL92) v3.6.1	medwcgB146
ClCG04G010570	Carg04853	Silver-seed gourd	carwcgB0383

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG04G010570	Silver-seed gourd	carwcgB0481
ClCG04G010570	Cucumber (Chinese Long) v3	cucwcgB063
ClCG04G010570	Cucurbita pepo (Zucchini)	cpewcgB038