Cp4.1LG20g01630 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g01630
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pseudouridine synthase, catalytic domain-containing protein
Location	Cp4.1LG20 : 893854 .. 896117 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACTCATTGCCTCAATTAGAAGCAGAACAGCTGACAGCACACATTGAGACTCCAACTGTGGACATTGCTTTTGAGACAGAAGAACTAGAGATTACATCACAGTTGAGGGATGCTATTGCAACTGAACTGTGGAGTGACTATATTAACGATATATCGCCCATGTAAATCAAATGTATGTTATCGTAGCGTCCGAGTTAGGTCAGATACTCTTCAGGAACACAAAAAATACACAAATGGGGTCTGATTTTGAAGGTGTATATTGACATTACTATGTTCATATGAAAGGAATATAACAGTGGACATTGTTTTTCTTTTTTTCTTTTAGGAAAGTCAAATTCTTGAGTACTGCTGCCAAGGAAACAACACCAGGTTAGCGTTCTTGATGAGATCTGACTGATATTTGTTTGCATTGAGTTGAATTCTGTTGCACATATCAATCTATTTGGCTGTTGATGCAAGGCATTGGGGATGGATCTGAGCTATCTGAATGTGAATGTTTAATATTTGCTTCTTTTTTACTGCTACGTTCATCTGGCTTCCATCTGAAAGTACCCCAAAGTTCCCTACCTCGTGTATGTGGTGGTGCCCCTTGTATGAGGTATAACCGTGCTAGTCAATAGATATTGTCCTCTTTGAACTTTTTCTTTCAGGCTTTTCTTCGAAGTTTTTAAAATGTGTCGATTAAAGAGAGAGGGGAGTGAGGTTTTGGGGTTTTGTGTTTATTGGATTCTCTGACTTCCTCTGCTTCACTGCTCACTCATCACTCATTTTAGATTACTTTTCTTTCTTCTTCCTCATCACTCATTTTAGATTACTTTTCTTTCTTCTTCCTGTCCTCTCTGTCGTCTTCCTTTCCATCTCTGGAATTTTGGGATCATGGGTTTATCTCGTCTCCTTTGTATCTTTCATAAACGTTTCAAAACTATTATCGATTAGGAATTGGACCGGTGTGGTGGCGACCTACACCAGTATAGGTCTCCAACGCAGATTTTAGGTCTCAATTTCGTGTGTTGGGACATTACTGCCCCATCAAATATTTTTTATGATCCATTTATTTATAGTACTTGTATCTTGTAGTTATTGATAGAAACAAATAGAGTATTTAGAATGAAATGTAATATAATAAGGTGTTGTTTGCTTATTACAATTTTGCCCCTTCTGGGTTATGGAAATTACATATAAATGTGTGGAGAGTAGAAAAGTAAGAAGTGAAAAAGTGGAAGGACAAAATTGAGAATAAATAAAAGAAAACAGACACAAAAAGGCTGCACGCACTAACAAATCATTTCAAAACCCATTTCTATTTTCATCGCTCTGTCTCTCAATTTCTTCTTCTTCTCTTCTCATTCAAATTTCAGTCTCGGTTGCTATACCAAGAGACCTTAAGAGATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGGTGCCCATCCTCGCCGTCTCCCATTTTCTGATTCTCTCTCTGTTTTTCATTTTGGGAATTCAATTTTGTTTTGCAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACTCCGCCGCGACCGCCGCCGCTGGTGGCGGTTCCCGCAAGAGTAAGAAGCCAAAAAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGAGGAAGATACGTCCGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAAAATGTGGGATTTGATTTGTGAGGGTATATTTAAAATCTTATATTATATTTAATTAATCAAACCCTTGAATTAAGGTGAAAGAAAAAAAGAAAAAAGAAAAAAAAATGTCACCTTTATCGTGTAGGTGACCCTCTTTTTTTTTTTTTTTTTAATTTCCTTTAATCATCTCACAGGTTACTTCTATCTTCTTTTTTTCTTTTTCAAAATAATAATAATAATAATAAAA

mRNA sequence

ATGGAGGACTCATTGCCTCAATTAGAAGCAGAACAGCTGACAGCACACATTGAGACTCCAACTGTGGACATTGCTTTTGAGACAGAAGAACTAGAGATTACATCACAGTTGAGGGATGCTATTGCAACTGAACTGTGGAGTGACTATATTAACGATATATCGCCCATGAAAGTCAAATTCTTGAGTACTGCTGCCAAGGAAACAACACCAGGCATTGGGGATGGATCTGAGCTATCTGAATGTGAATGTTTAATATTTGCTTCTTTTTTACTGCTACGTTCATCTGGCTTCCATCTGAAATCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACTCCGCCGCGACCGCCGCCGCTGGTGGCGGTTCCCGCAAGAGTAAGAAGCCAAAAAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGAGGAAGATACGTCCGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAAAATGTGGGATTTGATTTGTGAGGGTATATTTAAAATCTTATATTATATTTAATTAATCAAACCCTTGAATTAAGGTGAAAGAAAAAAAGAAAAAAGAAAAAAAAATGTCACCTTTATCGTGTAGGTGACCCTCTTTTTTTTTTTTTTTTTAATTTCCTTTAATCATCTCACAGGTTACTTCTATCTTCTTTTTTTCTTTTTCAAAATAATAATAATAATAATAAAA

Coding sequence (CDS)

ATGGAGGACTCATTGCCTCAATTAGAAGCAGAACAGCTGACAGCACACATTGAGACTCCAACTGTGGACATTGCTTTTGAGACAGAAGAACTAGAGATTACATCACAGTTGAGGGATGCTATTGCAACTGAACTGTGGAGTGACTATATTAACGATATATCGCCCATGAAAGTCAAATTCTTGAGTACTGCTGCCAAGGAAACAACACCAGGCATTGGGGATGGATCTGAGCTATCTGAATGTGAATGTTTAATATTTGCTTCTTTTTTACTGCTACGTTCATCTGGCTTCCATCTGAAATCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACTCCGCCGCGACCGCCGCCGCTGGTGGCGGTTCCCGCAAGAGTAAGAAGCCAAAAAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGAGGAAGATACGTCCGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAA

Protein sequence

MEDSLPQLEAEQLTAHIETPTVDIAFETEELEITSQLRDAIATELWSDYINDISPMKVKFLSTAAKETTPGIGDGSELSECECLIFASFLLLRSSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHSAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG

Homology

[Close]

BLAST of Cp4.1LG20g01630 vs. Swiss-Prot
Match: Y3795_ARATH (Uncharacterized protein At3g17950 OS=Arabidopsis thaliana GN=Y-3 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-31
Identity = 94/195 (48.21%), Postives = 116/195 (59.49%), Query Frame = 1


Query: 94  SSGFHLKSTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNRDQHSAA-TAAAGGGSRK 153
           SS    +STGSFFHDRS +LGTLMG SF A   + FR  S+     S A + A+   +R+
Sbjct: 17  SSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAISRASSSNARR 76

Query: 154 SKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASLGEFLEVERRF 213
           + + KR  + +      R+R+WWR CRDD       G+       K +SLGE+LEVERRF
Sbjct: 77  NHQRKRPPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSLGEYLEVERRF 136

Query: 214 GDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALC 261
           GD A + +A  +LE  V A   DQQ     R+LFADGRVLPPA  E    E T  A +LC
Sbjct: 137 GDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTGEGTPVATSLC 196

[Close]

BLAST of Cp4.1LG20g01630 vs. TrEMBL
Match: A0A0A0LQI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042870 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 5.4e-79
Identity = 152/169 (89.94%), Postives = 157/169 (92.90%), Query Frame = 1


Query: 92  LRSSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHSAATAAAGGGSRKSK 151
           + SS    +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH+AAT  AGGGSRKSK
Sbjct: 349 ISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATVTAGGGSRKSK 408

Query: 152 KPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVV 211
           K KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV
Sbjct: 409 KTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV 468

Query: 212 SADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 261
           +ADQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLTGICSGGAG
Sbjct: 469 AADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLTGICSGGAG 517

[Close]

BLAST of Cp4.1LG20g01630 vs. TrEMBL
Match: D7SJD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02120 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.2e-49
Identity = 114/173 (65.90%), Postives = 124/173 (71.68%), Query Frame = 1


Query: 94  SSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH------SAATAAAGGGS 153
           SS    +STGSFFHDRSTSLGTLMGVSFPAITFR  SQ+R+          A A  GGG 
Sbjct: 21  SSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAQSQHREAQPVPAASGVAVAGRGGGG 80

Query: 154 RKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDL 213
           RKS+K K+    A  LVA+R+RRWWRLCRDD  KPASLGEFLEVERRFGD AFFG A +L
Sbjct: 81  RKSRKVKK----ALGLVAERRRRWWRLCRDDAAKPASLGEFLEVERRFGDVAFFGAAAEL 140

Query: 214 EGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 261
           EGVV+  Q  NGR LFADGRVLPP Q EE  S   +LCRF VSLTGI S   G
Sbjct: 141 EGVVA--QPENGRVLFADGRVLPPPQAEESPSTVSSLCRFPVSLTGIFSSSTG 187

[Close]

BLAST of Cp4.1LG20g01630 vs. TrEMBL
Match: M5WDP9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015800mg PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-49
Identity = 110/180 (61.11%), Postives = 132/180 (73.33%), Query Frame = 1


Query: 92  LRSSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNR-------DQHSAATAAAG 151
           + SS    +STGSFFHDRST+LGTLMGVSFPAITFR PSQ R       + ++   + +G
Sbjct: 20  ISSSDLDTESTGSFFHDRSTTLGTLMGVSFPAITFRAPSQQRRDPQANSNNNNNMASTSG 79

Query: 152 GGSRKSKKPKRKTTAAPA---LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFF 211
            GSRK+KKPK+K  AA +   +VA+R+RRWWRLCRDD  KPASLGEFLEVERRFGD AF+
Sbjct: 80  SGSRKTKKPKKKNAAASSAVGVVAERRRRWWRLCRDDCTKPASLGEFLEVERRFGDNAFY 139

Query: 212 GNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEE---DTSAAGALCRFSVSLTGICSGG 259
             A +LEGV+   Q RNGR LFADGRVLPP+  ++    +S AG L RF VS+T ICSGG
Sbjct: 140 NTAAELEGVM-VGQPRNGRLLFADGRVLPPSNVDDRIATSSTAGVLSRFPVSITAICSGG 198

[Close]

BLAST of Cp4.1LG20g01630 vs. TrEMBL
Match: A0A059D1K9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00988 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.3e-48
Identity = 116/179 (64.80%), Postives = 133/179 (74.30%), Query Frame = 1


Query: 92  LRSSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH----SAATAAA--GG 151
           L SS    +STGSFFHDRST+LGTLMGVSFPAI FR PSQ+ + H    SAA AAA    
Sbjct: 20  LSSSDLDTESTGSFFHDRSTTLGTLMGVSFPAIAFRNPSQHHEAHHPSASAAAAAAPVAA 79

Query: 152 GSRKSKKPKRKTTAAPA--LVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGN 211
           G  KSKKPK+K  A PA  LVA+R+RRWWRLCRDDG KPASLGEFLE+ERRFGDGAF+  
Sbjct: 80  GGLKSKKPKKKKAANPAAALVAERRRRWWRLCRDDGGKPASLGEFLEMERRFGDGAFYDG 139

Query: 212 A--VDLEGVV-SADQQRNGRSLFADGRVLPPAQTEED---TSAAGALCRFSVSLTGICS 257
           A   +L+G+   ++Q RNGR LFADGRVLPPA    D   ++  GALCRF VSLTG+CS
Sbjct: 140 APRSELDGMADGSNQPRNGRVLFADGRVLPPAVDVGDGTPSADGGALCRFPVSLTGLCS 198

[Close]

BLAST of Cp4.1LG20g01630 vs. TrEMBL
Match: W9R7P5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008807 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 5.0e-48
Identity = 114/175 (65.14%), Postives = 128/175 (73.14%), Query Frame = 1


Query: 92  LRSSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHSAATAA------AGG 151
           + SS    +STGSFFHDRST+LGTLMGVSFPAI FR PSQ R +   +T+A      AG 
Sbjct: 20  ISSSDLDTESTGSFFHDRSTTLGTLMGVSFPAIAFRAPSQRRRETPISTSAAQSSVVAGA 79

Query: 152 GSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDG-VKPASLGEFLEVERRFGDGAFFGNA 211
           GSRK +  K KT  A A+VA+R RRWW LCRDDG  KPASLGEFLEVERRFGDGAFFG A
Sbjct: 80  GSRKCR--KAKTKKAVAVVAERTRRWWSLCRDDGDTKPASLGEFLEVERRFGDGAFFGAA 139

Query: 212 VDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDT--SAAGALCRFSVSLTGICSG 258
            + E  V   +QRNGR LFADGRVLPPA   ++T  S+ GALCRF V LTGICSG
Sbjct: 140 TEFERAV-VGEQRNGRVLFADGRVLPPAVDVDETTSSSDGALCRFPVYLTGICSG 191

[Close]

BLAST of Cp4.1LG20g01630 vs. TAIR10
Match: AT3G17950.1 (AT3G17950.1 unknown protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-32
Identity = 94/195 (48.21%), Postives = 116/195 (59.49%), Query Frame = 1


Query: 94  SSGFHLKSTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNRDQHSAA-TAAAGGGSRK 153
           SS    +STGSFFHDRS +LGTLMG SF A   + FR  S+     S A + A+   +R+
Sbjct: 17  SSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAISRASSSNARR 76

Query: 154 SKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASLGEFLEVERRF 213
           + + KR  + +      R+R+WWR CRDD       G+       K +SLGE+LEVERRF
Sbjct: 77  NHQRKRPPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSLGEYLEVERRF 136

Query: 214 GDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQTE----EDTSAAGALC 261
           GD A + +A  +LE  V A   DQQ     R+LFADGRVLPPA  E    E T  A +LC
Sbjct: 137 GDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTGEGTPVATSLC 196

[Close]

BLAST of Cp4.1LG20g01630 vs. NCBI nr
Match: gi|659066884|ref|XP_008465627.1| (PREDICTED: uncharacterized protein At3g17950 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 4.1e-80
Identity = 154/169 (91.12%), Postives = 159/169 (94.08%), Query Frame = 1


Query: 92  LRSSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHSAATAAAGGGSRKSK 151
           + SS    +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH+AAT  AGGGSRKSK
Sbjct: 20  ISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATVTAGGGSRKSK 79

Query: 152 KPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVV 211
           K KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV
Sbjct: 80  KTKRKTTTAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV 139

Query: 212 SADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 261
           +ADQQRNGRSLFADGRVLPPAQTEEDTSA GALCRFSVSLTGICSGGAG
Sbjct: 140 TADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLTGICSGGAG 188

[Close]

BLAST of Cp4.1LG20g01630 vs. NCBI nr
Match: gi|778657418|ref|XP_011650866.1| (PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 7.8e-79
Identity = 152/169 (89.94%), Postives = 157/169 (92.90%), Query Frame = 1


Query: 92  LRSSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHSAATAAAGGGSRKSK 151
           + SS    +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH+AAT  AGGGSRKSK
Sbjct: 111 ISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATVTAGGGSRKSK 170

Query: 152 KPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVV 211
           K KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV
Sbjct: 171 KTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV 230

Query: 212 SADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 261
           +ADQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLTGICSGGAG
Sbjct: 231 AADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLTGICSGGAG 279

[Close]

BLAST of Cp4.1LG20g01630 vs. NCBI nr
Match: gi|700209084|gb|KGN64180.1| (hypothetical protein Csa_1G042870 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 7.8e-79
Identity = 152/169 (89.94%), Postives = 157/169 (92.90%), Query Frame = 1


Query: 92  LRSSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHSAATAAAGGGSRKSK 151
           + SS    +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH+AAT  AGGGSRKSK
Sbjct: 349 ISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATVTAGGGSRKSK 408

Query: 152 KPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVV 211
           K KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV
Sbjct: 409 KTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV 468

Query: 212 SADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 261
           +ADQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLTGICSGGAG
Sbjct: 469 AADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLTGICSGGAG 517

[Close]

BLAST of Cp4.1LG20g01630 vs. NCBI nr
Match: gi|778657421|ref|XP_011650870.1| (PREDICTED: uncharacterized protein At3g17950 isoform X3 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 7.8e-79
Identity = 152/169 (89.94%), Postives = 157/169 (92.90%), Query Frame = 1


Query: 92  LRSSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHSAATAAAGGGSRKSK 151
           + SS    +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH+AAT  AGGGSRKSK
Sbjct: 106 ISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATVTAGGGSRKSK 165

Query: 152 KPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVV 211
           K KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV
Sbjct: 166 KTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV 225

Query: 212 SADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 261
           +ADQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLTGICSGGAG
Sbjct: 226 AADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLTGICSGGAG 274

[Close]

BLAST of Cp4.1LG20g01630 vs. NCBI nr
Match: gi|778657415|ref|XP_011650862.1| (PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 7.8e-79
Identity = 152/169 (89.94%), Postives = 157/169 (92.90%), Query Frame = 1


Query: 92  LRSSGFHLKSTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHSAATAAAGGGSRKSK 151
           + SS    +STGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH+AAT  AGGGSRKSK
Sbjct: 131 ISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHTAATVTAGGGSRKSK 190

Query: 152 KPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVV 211
           K KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV
Sbjct: 191 KTKRKTTMAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV 250

Query: 212 SADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLTGICSGGAG 261
           +ADQQRNGRSLFADGRVLPPAQTEEDTS A  LCRFSVSLTGICSGGAG
Sbjct: 251 AADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLTGICSGGAG 299

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g01630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3795_ARATH	2.7e-31	48.21	Uncharacterized protein At3g17950 OS=Arabidopsis thaliana GN=Y-3 PE=1 SV=1	[more]

BLAST of Cp4.1LG20g01630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQI1_CUCSA	5.4e-79	89.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042870 PE=4 SV=1	[more]
D7SJD6_VITVI	1.2e-49	65.90	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02120 PE=4 SV=...	[more]
M5WDP9_PRUPE	3.4e-49	61.11	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015800mg PE=4 SV=1	[more]
A0A059D1K9_EUCGR	1.3e-48	64.80	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00988 PE=4 SV=1	[more]
W9R7P5_9ROSA	5.0e-48	65.14	Uncharacterized protein OS=Morus notabilis GN=L484_008807 PE=4 SV=1	[more]

BLAST of Cp4.1LG20g01630 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17950.1	1.5e-32	48.21	unknown protein	[more]

BLAST of Cp4.1LG20g01630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066884\|ref\|XP_008465627.1\|	4.1e-80	91.12	PREDICTED: uncharacterized protein At3g17950 [Cucumis melo]	[more]
gi\|778657418\|ref\|XP_011650866.1\|	7.8e-79	89.94	PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis sativus]	[more]
gi\|700209084\|gb\|KGN64180.1\|	7.8e-79	89.94	hypothetical protein Csa_1G042870 [Cucumis sativus]	[more]
gi\|778657421\|ref\|XP_011650870.1\|	7.8e-79	89.94	PREDICTED: uncharacterized protein At3g17950 isoform X3 [Cucumis sativus]	[more]
gi\|778657415\|ref\|XP_011650862.1\|	7.8e-79	89.94	PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g01630.1	Cp4.1LG20g01630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33544	FAMILY NOT NAMED	coord: 101..260 score: 3.5
None	No IPR available	PANTHER	PTHR33544:SF5	SUBFAMILY NOT NAMED	coord: 101..260 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG20g01630	Cucsa.121980	Cucumber (Gy14) v1	cgycpeB0308
Cp4.1LG20g01630	CmaCh13G009840	Cucurbita maxima (Rimu)	cmacpeB234
Cp4.1LG20g01630	CmaCh18G000770	Cucurbita maxima (Rimu)	cmacpeB439
Cp4.1LG20g01630	CmoCh18G000590	Cucurbita moschata (Rifu)	cmocpeB404
Cp4.1LG20g01630	CmoCh13G010180	Cucurbita moschata (Rifu)	cmocpeB201
Cp4.1LG20g01630	Cla018449	Watermelon (97103) v1	cpewmB523
Cp4.1LG20g01630	Csa1G042870	Cucumber (Chinese Long) v2	cpecuB505
Cp4.1LG20g01630	MELO3C002138	Melon (DHL92) v3.5.1	cpemeB478
Cp4.1LG20g01630	ClCG04G010570	Watermelon (Charleston Gray)	cpewcgB471
Cp4.1LG20g01630	CSPI01G07270	Wild cucumber (PI 183967)	cpecpiB505
Cp4.1LG20g01630	Lsi02G002410	Bottle gourd (USVL1VR-Ls)	cpelsiB418
Cp4.1LG20g01630	MELO3C002138.2	Melon (DHL92) v3.6.1	cpemedB560
Cp4.1LG20g01630	CsaV3_1G007210	Cucumber (Chinese Long) v3	cpecucB0623
Cp4.1LG20g01630	Bhi08G001082	Wax gourd	cpewgoB0635
Cp4.1LG20g01630	CsGy1G007110	Cucumber (Gy14) v2	cgybcpeB069
Cp4.1LG20g01630	Carg04852	Silver-seed gourd	carcpeB0544

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g01630	Silver-seed gourd	carcpeB0696
Cp4.1LG20g01630	Cucurbita pepo (Zucchini)	cpecpeB049