Carg04853 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04853
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Isoform 2 of uncharacterized protein
Location	Cucurbita_argyrosperma_scaffold_028 : 1316058 .. 1316945 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGAATAAATAAAAGAAAACAGACACAAAAAGGCTGCACGCACTAACAAATCATTTCAAAACCCATTTCTATTTTCATCTCTCTGTCTCTCAATTTCTTCTTCTTCTTTGTTTTTACTTCTCATTCAAATTTCAGTCTCGGTTGCTATACCAAGAGACCTTAAGAGATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGGTGCCCATCCTCGCCGTCTCCCATTTTCTGATTCTCTCTCTGTTTTTCATTTTGGGAATTCAATTTTGTTTTGCAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTGGTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGACGAAGATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAAAATGTGGGATTTGATTTGTGAGAGTATATTTAAAATCTTATATTATATTTAATTAATCAAACGCTTGAATTAAGGTGG

mRNA sequence

TGAGAATAAATAAAAGAAAACAGACACAAAAAGGCTGCACGCACTAACAAATCATTTCAAAACCCATTTCTATTTTCATCTCTCTGTCTCTCAATTTCTTCTTCTTCTTTGTTTTTACTTCTCATTCAAATTTCAGTCTCGGTTGCTATACCAAGAGACCTTAAGAGATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTGGTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGACGAAGATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAAAATGTGGGATTTGATTTGTGAGAGTATATTTAAAATCTTATATTATATTTAATTAATCAAACGCTTGAATTAAGGTGG

Coding sequence (CDS)

ATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTGGTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGACGAAGATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAA

Protein sequence

MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

Homology

[Close]

BLAST of Carg04853 vs. NCBI nr
Match: XP_022924210.1 (uncharacterized protein At3g17950 [Cucurbita moschata] >XP_022924211.1 uncharacterized protein At3g17950 [Cucurbita moschata])

HSP 1 Score: 281.6 bits (719), Expect = 2.0e-72
Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120
           RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQT+EDTSAAGALCRFSVSLT
Sbjct: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. NCBI nr
Match: XP_023520118.1 (uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo] >XP_023520119.1 uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.6 bits (719), Expect = 2.0e-72
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120
           RDQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQT+EDTSAAGALCRFSVSLT
Sbjct: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. NCBI nr
Match: XP_016899568.1 (PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis melo] >XP_016899571.1 PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis melo])

HSP 1 Score: 277.7 bits (709), Expect = 2.9e-71
Identity = 181/188 (96.28%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120
           RDQ   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLT
Sbjct: 121 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. NCBI nr
Match: XP_008465627.2 (PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis melo])

HSP 1 Score: 277.7 bits (709), Expect = 2.9e-71
Identity = 181/188 (96.28%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 13  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 72

Query: 61  RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120
           RDQ   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE
Sbjct: 73  RDQHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 132

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLT
Sbjct: 133 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLT 192

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 193 GICSGGAG 200

[Close]

BLAST of Carg04853 vs. NCBI nr
Match: XP_023001809.1 (uncharacterized protein At3g17950-like [Cucurbita maxima])

HSP 1 Score: 276.6 bits (706), Expect = 6.4e-71
Identity = 182/188 (96.81%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120
           RDQ   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAFF NAVDLEGVVSADQQRNGR LFADGRVLPPAQT+EDTSAAGALCRFSVSLT
Sbjct: 121 RRFGDGAFFDNAVDLEGVVSADQQRNGRYLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. TAIR10
Match: AT3G17950.1 (unknown protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-27
Identity = 129/205 (62.93%), Postives = 141/205 (68.78%), Query Frame = 0


Query: 12  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR------- 71
           PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+         
Sbjct: 7   PSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAI 66

Query: 72  -------DQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDG-VKPASL 131
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  + R  G  K +SL
Sbjct: 67  SRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGIHRGTGDSKRSSL 126

Query: 132 GEFLEVERRFGDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQ----TD 189
           GE+LEVERRFGD A + +A  +LE  V A   DQQ     R+LFADGRVLPPA     T 
Sbjct: 127 GEYLEVERRFGDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTG 186

[Close]

BLAST of Carg04853 vs. Swiss-Prot
Match: sp|Q6DR24|Y3795_ARATH (Uncharacterized protein At3g17950 OS=Arabidopsis thaliana OX=3702 GN=Y-3 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.5e-26
Identity = 129/205 (62.93%), Postives = 141/205 (68.78%), Query Frame = 0


Query: 12  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR------- 71
           PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+         
Sbjct: 7   PSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAI 66

Query: 72  -------DQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDG-VKPASL 131
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  + R  G  K +SL
Sbjct: 67  SRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGIHRGTGDSKRSSL 126

Query: 132 GEFLEVERRFGDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQ----TD 189
           GE+LEVERRFGD A + +A  +LE  V A   DQQ     R+LFADGRVLPPA     T 
Sbjct: 127 GEYLEVERRFGDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTG 186

[Close]

BLAST of Carg04853 vs. TrEMBL
Match: tr|A0A1S4DUB1|A0A1S4DUB1_CUCME (uncharacterized protein At3g17950 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503240 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.9e-71
Identity = 181/188 (96.28%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120
           RDQ   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLT
Sbjct: 121 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. TrEMBL
Match: tr|A0A1S3CPP8|A0A1S3CPP8_CUCME (uncharacterized protein At3g17950 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503240 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.9e-71
Identity = 181/188 (96.28%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 13  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 72

Query: 61  RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120
           RDQ   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE
Sbjct: 73  RDQHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 132

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLT
Sbjct: 133 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLT 192

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 193 GICSGGAG 200

[Close]

BLAST of Carg04853 vs. TrEMBL
Match: tr|A0A0A0LQI1|A0A0A0LQI1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042870 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.8e-70
Identity = 176/188 (93.62%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 330 MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 389

Query: 61  RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120
           RDQ    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RLCRDDGVKPASLGEFLEVE
Sbjct: 390 RDQHTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWWRLCRDDGVKPASLGEFLEVE 449

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTS A  LCRFSVSLT
Sbjct: 450 RRFGDGAFYGNAVDLEGVVAADQQRNGRSLFADGRVLPPAQTEEDTSGAATLCRFSVSLT 509

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 510 GICSGGAG 517

[Close]

BLAST of Carg04853 vs. TrEMBL
Match: tr|A0A2P4HA03|A0A2P4HA03_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66411 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.9e-51
Identity = 137/193 (70.98%), Postives = 150/193 (77.72%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           ML+PA+++LPPPSSPT SS+SSSDLDTESTGSFFHDRST+LGTLMGVSFPAITFR PSQ+
Sbjct: 1   MLDPASEMLPPPSSPTISSVSSSDLDTESTGSFFHDRSTTLGTLMGVSFPAITFRAPSQH 60

Query: 61  RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEVE 120
           RD                     XXXXXXXXXXXXXXXXXRLCRD+  +P+SLGEFLEVE
Sbjct: 61  RD--PHVTVTVSVSRKAKKTRKSXXXXXXXXXXXXXXXXXRLCRDEEARPSSLGEFLEVE 120

Query: 121 RRFGDGAFFG-NAVDLEGVVSADQ----QRNGRSLFADGRVLPPAQTDEDTSAAGALCRF 180
           RRFGDGAFFG  A +LEG V  +Q    QRNGR LFADGRVLPPA  D+  S AGALCRF
Sbjct: 121 RRFGDGAFFGAAAAELEGGVVVEQPQQNQRNGRLLFADGRVLPPAPDDQAASTAGALCRF 180

Query: 181 SVSLTGICSGGAG 189
            VSLTGICSGG G
Sbjct: 181 PVSLTGICSGGVG 191

[Close]

BLAST of Carg04853 vs. TrEMBL
Match: tr|A0A2P6P1S0|A0A2P6P1S0_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0178231 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50
Identity = 151/190 (79.47%), Postives = 164/190 (86.32%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           ML+P NDLLPPP SPTNSS+SSSDLDTESTGSFFHDRST+LGTLMGVSFPAITFR PSQ+
Sbjct: 1   MLDPRNDLLPPPVSPTNSSVSSSDLDTESTGSFFHDRSTTLGTLMGVSFPAITFRAPSQS 60

Query: 61  -RDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCRDDGVKPASLGEFLEV 120
            R+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LCRDDG KPASLGEFLEV
Sbjct: 61  RRELQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCRDDGTKPASLGEFLEV 120

Query: 121 ERRFGDGAFFGNAVDLEGVVSADQQRN-GRSLFADGRVLPPAQTDE--DTSAAGALCRFS 180
           ERRFGDGAF+  A +LEGV+ A Q RN G+ LFADGRVLPP+  D+   +S AG LCRF 
Sbjct: 121 ERRFGDGAFYNTAAELEGVMVAQQPRNGGQMLFADGRVLPPSNVDDGASSSTAGVLCRFP 180

Query: 181 VSLTGICSGG 187
           V+LT ICSGG
Sbjct: 181 VALTAICSGG 190

The following BLAST results are available for this feature:

BLAST of Carg04853 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924210.1	2.0e-72	99.47	uncharacterized protein At3g17950 [Cucurbita moschata] >XP_022924211.1 uncharact...	[more]
XP_023520118.1	2.0e-72	98.94	uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo] >XP_02352011...	[more]
XP_016899568.1	2.9e-71	96.28	PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis melo] >XP_01689...	[more]
XP_008465627.2	2.9e-71	96.28	PREDICTED: uncharacterized protein At3g17950 isoform X1 [Cucumis melo]	[more]
XP_023001809.1	6.4e-71	96.81	uncharacterized protein At3g17950-like [Cucurbita maxima]	[more]

BLAST of Carg04853 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17950.1	1.4e-27	62.93	unknown protein	[more]

BLAST of Carg04853 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6DR24\|Y3795_ARATH	2.5e-26	62.93	Uncharacterized protein At3g17950 OS=Arabidopsis thaliana OX=3702 GN=Y-3 PE=1 SV...	[more]

BLAST of Carg04853 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DUB1\|A0A1S4DUB1_CUCME	1.9e-71	96.28	uncharacterized protein At3g17950 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
tr\|A0A1S3CPP8\|A0A1S3CPP8_CUCME	1.9e-71	96.28	uncharacterized protein At3g17950 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
tr\|A0A0A0LQI1\|A0A0A0LQI1_CUCSA	2.8e-70	93.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042870 PE=4 SV=1	[more]
tr\|A0A2P4HA03\|A0A2P4HA03_QUESU	2.9e-51	70.98	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66411 PE=4 SV=1	[more]
tr\|A0A2P6P1S0\|A0A2P6P1S0_ROSCH	2.4e-50	79.47	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0178231 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04853-RA	Carg04853-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..90
None	No IPR available	PANTHER	PTHR33544	FAMILY NOT NAMED	coord: 1..188
None	No IPR available	PANTHER	PTHR33544:SF5	SUBFAMILY NOT NAMED	coord: 1..188

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04853	Cla018449	Watermelon (97103) v1	carwmB0387
Carg04853	MELO3C002138	Melon (DHL92) v3.5.1	carmeB0393
Carg04853	ClCG04G010570	Watermelon (Charleston Gray)	carwcgB0383
Carg04853	Cucsa.121990	Cucumber (Gy14) v1	carcgyB0452
Carg04853	CmaCh18G000770	Cucurbita maxima (Rimu)	carcmaB0541
Carg04853	CmoCh13G010180	Cucurbita moschata (Rifu)	carcmoB0526
Carg04853	CmoCh18G000590	Cucurbita moschata (Rifu)	carcmoB0527
Carg04853	CsGy1G007120	Cucumber (Gy14) v2	carcgybB0393
Carg04853	MELO3C002138.2	Melon (DHL92) v3.6.1	carmedB0397
Carg04853	Cla97C04G077390	Watermelon (97103) v2	carwmbB0409

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04853	Cucumber (Chinese Long) v2	carcuB0415
Carg04853	Cucumber (Chinese Long) v3	carcucB0418
Carg04853	Bottle gourd (USVL1VR-Ls)	carlsiB353
Carg04853	Wax gourd	carwgoB0473
Carg04853	Silver-seed gourd	carcarB411
Carg04853	Cucurbita maxima (Rimu)	carcmaB0540
Carg04853	Cucurbita pepo (Zucchini)	carcpeB0539
Carg04853	Cucurbita pepo (Zucchini)	carcpeB0544
Carg04853	Wild cucumber (PI 183967)	carcpiB0418