CmoCh11G014750 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G014750
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCystatin domain containing protein
LocationCmo_Chr11 : 10408556 .. 10409029 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATAAGCCTTCTATAAAGATCAAGCTAGTCCAAGAACCAAAATCATCACAACGCAAAGCTTTTGTTCATACCATAACCATAACCAAAAAGGCCAAAATGATATCTACCCTGCTCGCTAATATCGGTCAACACGATCCGATCCTCCATGTGACAAAGGATGTGAAGGGTGATCCACGTTCTGAATGGATATCAATTCAAACTATCGAGGATCCCTATGTTCAAGAAGTTGCAAAGTTTGCAGTTGCAGAGTTCAACGTAGATAAAATGACAACGTTTCAATATAAGCGCATGTTACGTTGTTGGATTAAGGAGGAGATGGAAGGCATAAAATATCGCCTTGTTTTAGAGGTAAAACAAGAAGCACCAACTCAAAAAGTCTGTAAACATGAGGCTGTTGTTTGGGAGGCTTCCGGTCGTTTGATAATAAGGAAGCTAAAGCTCGTATCTTTCGTCCCTTGTTTTGATTAA

mRNA sequence

ATGATTGATAAGCCTTCTATAAAGATCAAGCTAGTCCAAGAACCAAAATCATCACAACGCAAAGCTTTTGTTCATACCATAACCATAACCAAAAAGGCCAAAATGATATCTACCCTGCTCGCTAATATCGGTCAACACGATCCGATCCTCCATGTGACAAAGGATGTGAAGGGTGATCCACGTTCTGAATGGATATCAATTCAAACTATCGAGGATCCCTATGTTCAAGAAGTTGCAAAGTTTGCAGTTGCAGAGTTCAACGTAGATAAAATGACAACGTTTCAATATAAGCGCATGTTACGTTGTTGGATTAAGGAGGAGATGGAAGGCATAAAATATCGCCTTGTTTTAGAGGTAAAACAAGAAGCACCAACTCAAAAAGTCTGTAAACATGAGGCTGTTGTTTGGGAGGCTTCCGGTCGTTTGATAATAAGGAAGCTAAAGCTCGTATCTTTCGTCCCTTGTTTTGATTAA

Coding sequence (CDS)

ATGATTGATAAGCCTTCTATAAAGATCAAGCTAGTCCAAGAACCAAAATCATCACAACGCAAAGCTTTTGTTCATACCATAACCATAACCAAAAAGGCCAAAATGATATCTACCCTGCTCGCTAATATCGGTCAACACGATCCGATCCTCCATGTGACAAAGGATGTGAAGGGTGATCCACGTTCTGAATGGATATCAATTCAAACTATCGAGGATCCCTATGTTCAAGAAGTTGCAAAGTTTGCAGTTGCAGAGTTCAACGTAGATAAAATGACAACGTTTCAATATAAGCGCATGTTACGTTGTTGGATTAAGGAGGAGATGGAAGGCATAAAATATCGCCTTGTTTTAGAGGTAAAACAAGAAGCACCAACTCAAAAAGTCTGTAAACATGAGGCTGTTGTTTGGGAGGCTTCCGGTCGTTTGATAATAAGGAAGCTAAAGCTCGTATCTTTCGTCCCTTGTTTTGATTAA
Homology
[Close]
BLAST of CmoCh11G014750 vs. TrEMBL
Match: A0A0A0K644_CUCSA (Cystatin domain containing protein OS=Cucumis sativus GN=Csa_7G066240 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-42
Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 1 

Query: 35  MISTLLANIGQHDPILHVT-KDVKGDPRSEWISIQTIEDPYVQEVAKFAVAEFNVDKMTT 94
           MISTLLAN+GQHDPILHVT KD KGD +SEWISI+ IEDPYVQEVAKFA+ EF  +KM  
Sbjct: 1   MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR 60

Query: 95  FQYKRMLRCWIKEEMEGIKYRLVLEVKQEAPTQKVCKHEAVVWEASGRLIIRKLKLVSFV 154
           FQYKR+L CWIKEEM GIKYRLVLEV +E   +   K+EAVVWEASGRLIIRKLKL+SF+
Sbjct: 61  FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEKLEG--KYEAVVWEASGRLIIRKLKLISFM 119

[Close]
BLAST of CmoCh11G014750 vs. NCBI nr
Match: gi|700188534|gb|KGN43767.1| (Cystatin domain containing protein [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 3.5e-42
Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 1 

Query: 35  MISTLLANIGQHDPILHVT-KDVKGDPRSEWISIQTIEDPYVQEVAKFAVAEFNVDKMTT 94
           MISTLLAN+GQHDPILHVT KD KGD +SEWISI+ IEDPYVQEVAKFA+ EF  +KM  
Sbjct: 1   MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR 60

Query: 95  FQYKRMLRCWIKEEMEGIKYRLVLEVKQEAPTQKVCKHEAVVWEASGRLIIRKLKLVSFV 154
           FQYKR+L CWIKEEM GIKYRLVLEV +E   +   K+EAVVWEASGRLIIRKLKL+SF+
Sbjct: 61  FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEKLEG--KYEAVVWEASGRLIIRKLKLISFM 119

The following BLAST results are available for this feature:
BLAST of CmoCh11G014750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G014750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K644_CUCSA2.5e-4276.03Cystatin domain containing protein OS=Cucumis sativus GN=Csa_7G066240 PE=4 SV=1[more]
BLAST of CmoCh11G014750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh11G014750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188534|gb|KGN43767.1|3.5e-4276.03Cystatin domain containing protein [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020381Proteinase inhibitor I25, cystatin, conserved region
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010951 negative regulation of endopeptidase activity
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G014750.1CmoCh11G014750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPRODOMPD001231coord: 75..137
score: 2.
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPFAMPF16845SQAPIcoord: 67..139
score: 5.0
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 68..139
score: 1.
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 63..154
score: 2.34

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G014750Cucsa.218360Cucumber (Gy14) v1cgycmoB0622
CmoCh11G014750CmaCh19G004710Cucurbita maxima (Rimu)cmacmoB494
CmoCh11G014750Cla012895Watermelon (97103) v1cmowmB071
CmoCh11G014750Csa7G066240Cucumber (Chinese Long) v2cmocuB134
CmoCh11G014750MELO3C018593Melon (DHL92) v3.5.1cmomeB094
CmoCh11G014750ClCG09G015860Watermelon (Charleston Gray)cmowcgB072
CmoCh11G014750CSPI07G06040Wild cucumber (PI 183967)cmocpiB133
CmoCh11G014750Lsi03G007240Bottle gourd (USVL1VR-Ls)cmolsiB104
CmoCh11G014750Cp4.1LG15g03650Cucurbita pepo (Zucchini)cmocpeB095
CmoCh11G014750MELO3C018593.2Melon (DHL92) v3.6.1cmomedB100
CmoCh11G014750CsaV3_7G007000Cucumber (Chinese Long) v3cmocucB0157
CmoCh11G014750Bhi05G000747Wax gourdcmowgoB0118
CmoCh11G014750CsGy7G005700Cucumber (Gy14) v2cgybcmoB879
CmoCh11G014750Carg22817Silver-seed gourdcarcmoB0396
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G014750Cucumber (Chinese Long) v3cmocucB0160
CmoCh11G014750Watermelon (97103) v2cmowmbB136
CmoCh11G014750Cucurbita moschata (Rifu)cmocmoB096
CmoCh11G014750Cucurbita moschata (Rifu)cmocmoB110
CmoCh11G014750Cucurbita moschata (Rifu)cmocmoB125
CmoCh11G014750Cucumber (Gy14) v1cgycmoB0624
CmoCh11G014750Cucurbita maxima (Rimu)cmacmoB117
CmoCh11G014750Melon (DHL92) v3.5.1cmomeB085
CmoCh11G014750Melon (DHL92) v3.5.1cmomeB134
CmoCh11G014750Cucurbita pepo (Zucchini)cmocpeB092
CmoCh11G014750Cucurbita pepo (Zucchini)cmocpeB126
CmoCh11G014750Bottle gourd (USVL1VR-Ls)cmolsiB108
CmoCh11G014750Cucumber (Gy14) v2cgybcmoB881
CmoCh11G014750Melon (DHL92) v3.6.1cmomedB091
CmoCh11G014750Silver-seed gourdcarcmoB0401
CmoCh11G014750Silver-seed gourdcarcmoB0508