CSPI07G06040 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G06040
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCystatin domain containing protein
LocationChr7 : 4486004 .. 4486746 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATTCCTCCCAATAGGTATCAATCTCACAAGGCTCTAGAGCTACACCATTTAGAAGACATCACCATTATTGAGATACACACTTCTATAAATATCAACAGCTACAACAACCAAAATCATCACAAACTAAAACCTTTTGTCCATATACTAAAAATCAAATTTAGGTCACAATGATTTCTACCCTGCTTGCCAACGTTGGTCAACATGATCCCATCCTCCATGTGACGTCAAAGGATACGAAGGGCGATCATCAATCCGAATGGATATCAATTCGTGCTATCGAAGACCCTTATGTGCAAGAAGTTGCGAAATTCGCCATGAGAGAGTTCGAGAAGGAAAAGATGGCAAGGTTTCAATACAAACGGCTGCTAAGTTGTTGGATTAAAGAGGAGATGGGAGGCATAAAATATCGCCTTGTTTTAGAGGTAATTAAAGAAGAAAAGATTGAGGGTAAATATGAGGCTGTTGTATGGGAGGCTTCTGGGCGTTTGATTATAAGGAAGCTTAAGCTTATATCTTTCATGCCTTCTATGCATGGGGCTGCATGACATTTCCATCCCCTCTTTGTATTATTTTCAAACTACAAAGCTTATGGTGTGAAATGCCATTGGTAAAATAAAAAAAAAAAGTATATATATACTTTCTATGTAAAAATCTTCTCTATGTTGATCAAAGCTAACTTTTACTGTACGGGAAATTTACTTACACCTATGGATGTTTGTGTTCAATCAAACAATCATCCAA

mRNA sequence

ATGATTTCTACCCTGCTTGCCAACGTTGGTCAACATGATCCCATCCTCCATGTGACGTCAAAGGATACGAAGGGCGATCATCAATCCGAATGGATATCAATTCGTGCTATCGAAGACCCTTATGTGCAAGAAGTTGCGAAATTCGCCATGAGAGAGTTCGAGAAGGAAAAGATGGCAAGGTTTCAATACAAACGGCTGCTAAGTTGTTGGATTAAAGAGGAGATGGGAGGCATAAAATATCGCCTTGTTTTAGAGGTAATTAAAGAAGAAAAGATTGAGGGTAAATATGAGGCTGTTGTATGGGAGGCTTCTGGGCGTTTGATTATAAGGAAGCTTAAGCTTATATCTTTCATGCCTTCTATGCATGGGGCTGCATGA

Coding sequence (CDS)

ATGATTTCTACCCTGCTTGCCAACGTTGGTCAACATGATCCCATCCTCCATGTGACGTCAAAGGATACGAAGGGCGATCATCAATCCGAATGGATATCAATTCGTGCTATCGAAGACCCTTATGTGCAAGAAGTTGCGAAATTCGCCATGAGAGAGTTCGAGAAGGAAAAGATGGCAAGGTTTCAATACAAACGGCTGCTAAGTTGTTGGATTAAAGAGGAGATGGGAGGCATAAAATATCGCCTTGTTTTAGAGGTAATTAAAGAAGAAAAGATTGAGGGTAAATATGAGGCTGTTGTATGGGAGGCTTCTGGGCGTTTGATTATAAGGAAGCTTAAGCTTATATCTTTCATGCCTTCTATGCATGGGGCTGCATGA
Homology
[Close]
BLAST of CSPI07G06040 vs. TrEMBL
Match: A0A0A0K644_CUCSA (Cystatin domain containing protein OS=Cucumis sativus GN=Csa_7G066240 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-63
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR 60
           MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR
Sbjct: 1   MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR 60

Query: 61  FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEKIEGKYEAVVWEASGRLIIRKLKLISFMPS 120
           FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEK+EGKYEAVVWEASGRLIIRKLKLISFMPS
Sbjct: 61  FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEKLEGKYEAVVWEASGRLIIRKLKLISFMPS 120

Query: 121 MHGAA 126
           MHGAA
Sbjct: 121 MHGAA 125

[Close]
BLAST of CSPI07G06040 vs. NCBI nr
Match: gi|700188534|gb|KGN43767.1| (Cystatin domain containing protein [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 2.2e-63
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR 60
           MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR
Sbjct: 1   MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR 60

Query: 61  FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEKIEGKYEAVVWEASGRLIIRKLKLISFMPS 120
           FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEK+EGKYEAVVWEASGRLIIRKLKLISFMPS
Sbjct: 61  FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEKLEGKYEAVVWEASGRLIIRKLKLISFMPS 120

Query: 121 MHGAA 126
           MHGAA
Sbjct: 121 MHGAA 125

The following BLAST results are available for this feature:
BLAST of CSPI07G06040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G06040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K644_CUCSA1.5e-6399.20Cystatin domain containing protein OS=Cucumis sativus GN=Csa_7G066240 PE=4 SV=1[more]
BLAST of CSPI07G06040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G06040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188534|gb|KGN43767.1|2.2e-6399.20Cystatin domain containing protein [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020381Proteinase inhibitor I25, cystatin, conserved region
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010951 negative regulation of endopeptidase activity
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G06040.1CSPI07G06040.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPRODOMPD001231coord: 42..102
score: 2.
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPFAMPF16845SQAPIcoord: 34..105
score: 1.5
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 35..104
score: 1.
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 31..119
score: 6.56

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G06040Cla012895Watermelon (97103) v1cpiwmB575
CSPI07G06040Csa7G066240Cucumber (Chinese Long) v2cpicuB354
CSPI07G06040MELO3C018593Melon (DHL92) v3.5.1cpimeB538
CSPI07G06040ClCG09G015860Watermelon (Charleston Gray)cpiwcgB557
CSPI07G06040Lsi03G007240Bottle gourd (USVL1VR-Ls)cpilsiB531
CSPI07G06040MELO3C018593.2Melon (DHL92) v3.6.1cpimedB523
CSPI07G06040CsaV3_7G007000Cucumber (Chinese Long) v3cpicucB415
CSPI07G06040Bhi05G000747Wax gourdcpiwgoB686
CSPI07G06040Cucsa.218360Cucumber (Gy14) v1cgycpiB336
CSPI07G06040CmaCh19G004710Cucurbita maxima (Rimu)cmacpiB540
CSPI07G06040CmoCh11G014750Cucurbita moschata (Rifu)cmocpiB133
CSPI07G06040Cp4.1LG15g03650Cucurbita pepo (Zucchini)cpecpiB265
CSPI07G06040CsGy7G005700Cucumber (Gy14) v2cgybcpiB332
CSPI07G06040Carg22817Silver-seed gourdcarcpiB0321
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G06040Wax gourdcpiwgoB672
CSPI07G06040Cucurbita maxima (Rimu)cmacpiB143
CSPI07G06040Cucurbita maxima (Rimu)cmacpiB153
CSPI07G06040Cucurbita maxima (Rimu)cmacpiB534
CSPI07G06040Cucurbita moschata (Rifu)cmocpiB525
CSPI07G06040Cucurbita moschata (Rifu)cmocpiB532
CSPI07G06040Watermelon (Charleston Gray)cpiwcgB541
CSPI07G06040Watermelon (97103) v1cpiwmB574
CSPI07G06040Cucurbita pepo (Zucchini)cpecpiB258
CSPI07G06040Cucurbita pepo (Zucchini)cpecpiB694
CSPI07G06040Cucurbita pepo (Zucchini)cpecpiB697
CSPI07G06040Bottle gourd (USVL1VR-Ls)cpilsiB536
CSPI07G06040Silver-seed gourdcarcpiB0323
CSPI07G06040Silver-seed gourdcarcpiB0767
CSPI07G06040Watermelon (97103) v2cpiwmbB584