CmoCh09G012050 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G012050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding protein 38
Location	Cmo_Chr09 : 9125440 .. 9132653 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTATTAGTGGGCTTAGACCATTACAAATGGTATCAGAGATAGATACCAAGCGATGTGTCAGCGAGGAGGTTGAGTTCCGAAGAGGGTGGACACGAGGTATGCCAGCAAGGACGTTGGGCCCTAAAGAGAGGTGGATTGCGGGGTCCCATATTGATAGGAGAAGAGAATGAATGCCAGCGAGAACACTAGGCTCTGAAGGGAGGTGAATTGTGAGATCCCACATCAGTTGGGGAGGAAATCGAAACATTTTTTATAAGGGTGTGAAAACTTCTCTTTAGTAGACACGTTTTAAAACCTTGAGGGAAAATCCAAAGAGGACAATATCTGCTATCAGTGGGTTTAGACCTTTACAAATGGTATTAAAGCCAGACACCAAACGATGTGCCAACGAGGAGGCTGAGCCCCGAAGGAGGTGGACACGAGGCAGTGTGCTAGTAAGGACATTGGACCCTAAAGAGAGATAGATTGGGGGGTTCCATATCAATAGAAGGAGGGAATGAATGCTAGTGAGGACGCTAGGTCCGAAGGGGGATAGATTGTGAAATCTCACATTAGTTGGGGAGGAGAAGGAAACATTTTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGTGTTTTAAAAATCTAGAGGGAAATCCCAAAGAGAACAATATCTACTAGTTGTGGATTTGGGCCATTACATATCTGATCTGATCTTCTATATTTCACATCAATTGGGGAGGAGAACGAAACATTTTAGGGTGTGAAAACTTCTCCCTAGCATACGCGTTTTAAAAATCTAAATGGAAATCTCAAAGAGAACAATATCTTCTATCTATGGATTTGGGCTGTTACATATCTGATCTGATCTTCTATATTTATTTGGGTATTTACTGCATAAGTCATCTTCTAATGAGCTCATCCAGATATCGAGTTAACCCTAACGGGTCGAGACGATATTTTAATATTAAATTGATATAATAAAGTTAAAAGAAATATATATATAAAAAAAAAAAGGAAGAAAAAAATAGTATTGCTCCTCTTGGCATTGCCTCCTTGGTGGGCTCTCCTCTCTCTATATAATTTGACGTCCGTATTATAAGAGGGTCTTTCCTGCCTCCCTTTAACCCCAAAAATAATTATAGTAATATATTTTTTATTTTATTTTATTTTTTATTTATAATTTGTTGCTGTCAAAGTTTTTCTTTCCCTTCCCTCCTTCCCTCACTTTCTCCTTTGTTCTCATCTCTGACCTAATTCTCTTCTTCTTCTTCCTCTTCACAAACAAAAACTTGAAGGATTTTGTTGGGTTTTGAAGATCAAACAACTTTTGTTTTGAAAATCAAAGAATTTTTGTTTCGAAGATCGAAGAATTTGGTGTTGAAGATCATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTAATCATTTTCTTCTAATTTCTCCATCTTGTTGTTCGTGTTCTTGTTCTTCTTCCATTTACTCTTTTCCTTTTTCGCTTTTAGGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCCAATTGCAATCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACGCCTAAGCACGGTATATTCACGTTTCTATACTCAGATCTATTGATTTTGATATTGCATGATATTGTCTACTTTGAATATAAAGCTCTCGTGACTTTACTTTTAGTTTTATCGAGATAGTGTTTGTTACTGTGAGATCTCACATCAGTTGGAGAGGTGAACGAAACACCCTTTATTAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAATACCATGAGGGTAAGCCCAAAAGGGAAAGCCCAAAGAGAACAGTATTTGCTAGCGGTGACTTTAAATACCCTTTATAAGGACAGGGAAATCTCTCTCTAGCAGATGTGTTTTAAAAATCTTGAAGGTAAACCCGAAAGGGAAAGCCCGAGATAGTGTCTGTTATTGTAAGATCTCACACTCTCAATAAGAGTTTGAAAACCTTTCTCTAGTAGACGCGTTTTAAAAGCCTCGAGGGTAAACTAAAAAAAAACAATATCTGCTAGCGGTGAGCTTAGATCGTTACAGTAACTTGTATACTTACGATAATTTAGATGTTTGTTTAAGTGTTTGATTTTGTGTTTAAAGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTTCTCTCTCTCTCTCTCTCTCCTTTTCTCTCTCTACAACGTGACTTGCCAACTCATATATTCACTTTAATTTATGACTAAGAATAAAGTTTTTATTTTTGCTTCATAATTACTCTAAATTAATTGATATCATTTCCTATATTCATATAATGCATTAAATTCTCCTTTCCTTTTGTTCTTTCCATTCCTTTGTATTAATGCATGCATGGGATTGCATGGATTTGTGAATAATTGGGTAATTGTTATTATCGTTGCTTGTTTAGGTACTCTTCGTACTCGCCCGACTACGCTTACCCTACGGTTCGTACAAACCTTTCTTGTTCTTCAGATTATTTTCAGTTTTGAGTATCATTGTTAGGAATGACGACTCTCCACAGTGGTATGATATTGTCCACTTTGAGCTTAAGCTCTCGTGGGTTTGTTTTGGACTTTCTAAAGACCTCGTATCGATGGAGATATATTCCTTACGTATAAATCCATGATCAATTTTGTGAGATCCCACATCGATTGGGGAGGAAAACGAAACACCGTTTATAAGGGTGTGGAAACCTTTCCTTAGCATACGTGTTTTAAAAACCTTGAGGGAAAACCCTAAGAGAAAAATATCTGCTAGCGGTGTGCTTGAGCTGTTATAAATGGTATCAAAGCCAGACACTGAACGATGTGCCAGCAAAGAGGCTGAGCTCCTAAGGGGTGGACACTAGGCAATTTGTTAGCAAGAATGCTGGCCCTAAAGGGGGGTTGATTGAATGGGTCCTACATTGATTGGAGAAGGGGATGAGTGTCAGAGAGAACGTTGGGCCCCGAAGGTCCCACATTGATTGGAGAAGGGAATGGGTGCCAGCGAGGACATTGGGTCCGGAAAGGGTGGATTGTGAGATCCCACATTGGTTGGGGAGTTGAACGAGACACCCTTTATAAGGGTGTAGAAACCATTTCTTATCAAACCCGTTTTCAAAACCTTAAGGGAAAACCCAAAAGGAAAATTTCAAAGAGAACAATATTTGCTAGCGGTGTGCTTGAACCGTTACAATTCCTTAAATTATCCAACGTGAGATTGCATCCCGACAATCTTTAACCATCATGAAATTCACAAAGAATAGTTGAAGTAATGGAATGGAATAAATATTTAAGAAGAAAAAAGAAACAAAAAAAATTAAAAGGGTTTTGAACAAGGACGGTAAAATTTTAATATTCCTTAGGGTGGAAGAATCTGTGTCATTGCGTGGTGGTCAAACTGTTGAAAAAGTGAAAGTTAAAAGAGACCAAATCAGTGCTTCCTTCTCTTGTCGTTTGACCCGACAGTTTTTGTTTCTACATTTATTATTTTGTAACAGTAAATCACTTTTTTTACAGTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTATGGTTTTATTGTTACGGTTTTTGTTACACGTTCTTTCATGCATGTAATCATGTAAATTCAAATTAAAAAACAAAATTAAAATAGAAGAGAGTTTTACCCTCTTATAAAGAATGTTTCGGAGTCCAGCGTCCTTGTTGGCATATCGCCTTGTGTCTTGAACTTTCCCGTTGGCATATTTTCCCATGTCTAGCTCTGATGTCATTTATAACAACCCAAGCCCACCGCTAGCCGATATTGTCCTCTTTGGAATTTTCCTTCCAAGCTTTCCTTCAAAATTTTAAAACGCGTCGGTTAGAAAGATGTTGCCACACATTTATAAATAATGTTTCGTTCTCCTTCTCAACGATGTGGGATCTCACAATATTAGAGTTGTGTTGAGATGGGAAAATCTTTTGGATTTGGGTTGGTTAGATTGATGGCTCGATTAACCTAAATACAACTTACAACCGAACCCCAAATTGGGTTGAGGCTGGGTTGACGGATTTTTTTAAATTATTTTAAAAAATTTTGTTTCTTCACCGGACATATTACATTAATAACTAAAATTTCATAAATTTAAAATATCAAACATTTACAAGCCACAATTATCAATAATAAAAAAAACGTCAAATATTTTTGGTCTAAAAAAATTTAACTTCAACAGTAAAAAGAAAATTATAATTCAACCCGACCATTATTATATTATTATTTATACGAGGGGTTTTTTTAATTAATTTCCAGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCCGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTGCCATCAGGTTCGTCTCTCCGCTCTCGTCTCATTCGATTAGTTTAAAACAATTATATTCATCTTCGTAAATAAAAATAAAATAAATAAAATAATTATCAAACGAACTAATGGTTAAGAATATTTAGCCTTCTATTATAGTTTAGATTAAAAATGAAGCTATGATATGTTAAGAATGAGAAACTCTGATACTATATTAAGAATAATGTTCTGATACCATGTTAATAATGAGAAGCTCTGATACCATGTTAAGAGGTATCATAAGAATGATGCTCATGCTCTTATACCATGTTAAAAATGAGAAGCTCTGATATCATGCTAAGAATGTTGCTCTGATACCATGTGAAGAATGATACTCTGATACCATGTTAAGAATGAGAAACAAAAGTGAGATTGAAAGTTCGAGAAATATTAGATGGAATCGAAAGTCCAAGAAAGTGGGAATCTATGATTGAAAGTCCAAGAAAGTGGGATCGAAAGTACGGTGAAATAAGAGAAAATATTCTACTAATGAAATCCCGAAGATAAGATAAATAGTTTATCATAATTACATATTTGACCTTTTATCATATTTACCCTCCTTTCCATTTACTCGGTAATTTATTTGATGATTATAAATAGATAATTTTCACCACCGTTTAGGTGGGGTAGTTTTAGCAAATATTCTCACTAATATCTTTGTATCTTTGACAGTGTTTTTCGCTATTCCACAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAAACGTCCTCAAATTTCCTCCGAAACGAAAAATCGCAAGCCCTAACCATGGTTCCATCTCTTTCTCTCTTCACTCTTTTGCCCAATGGTCAGCCCTCCGTCGGGGTTGAGCCAACCAACCATAGCTAACCTCACCAAAATCATGCATTATTTTTTTTTTTATCAAAAGTGGTTCTTAGGCCATGAAGGGACTTGGCCCTAAGTTGGCTAATTATGCACATAGCTACCTTTTAATCTTTGATAGCCTAAGGAAGGCTACAAGGATAGACCAAAAAAAACATTTTTCCAAAGGAAAAAAAAAACCCATTTCAAAAAGCTAATATTTTTCTCATTATTGTAATTAAATTTCAATTAGGAGTAATCACAACATGCTGCTTCTGTGAAGATCAGTGAATAGCTCCTGAACTCATCAGGATTAGCGATAGGGTTAAGAATATGTAGCGTTTTTGTTGCTATTATTACAAATTAATTAACTTGGTCTAATCAACCAACCCATTTCAAAATATTCCCCATGGGTTTGGGGAATGGTAATGAAACCCTTTTATTAATCAACTCTTAAGCACATTATTAGTTATTTCTTGTAATTAAACTTCACAAACAATGGTGGCTCAACTTATGGGAGTTATAGCCATGTTTATTTTTGGTAAAGGTTTTGCATTTAGGTCCCATAATTAGGAGTTAATTAGGATAGGATTAAGCATTCCATGATTTTGAGACTCCATTAATGGATATTGGAGGTCTCAAAATAAGCATTTTGCATGTGAGCCCTTGGGAGATATTTGGGTTCCCTTTGGCTTGTTCTTTCACTAACCCTAAACCAACCATGGTTAGGACTTAGGTCAACTTCATTTCTGTCTTCAATATTCCCATTTTACCCTCCTCTCTATCATCCATCCCAATCACCAATGTGTATGTGTGTTCAAGGGCTTTCTCGTCATGGAGTTGGTGGACCTTGGAAGCACTGTTTTTCATTGATTATGTCTGTAAAAGAAGAGCCTTTGTTCATGTCTTCTTATGGTTTGTAATGTAATTAGATACTCTATTACCCTTTCTTTATATCAAGACTTCTGCCTAAGATTTGGTTCTTCATTAGCTGCTTGAAGAATAACCTACGTACCTCAATATGAATTGCTTCTTTCTTTCTCTCAA

mRNA sequence

ATGTCTACTATTAGTGGGCTTAGACCATTACAAATGGTATCAGAGATAGATACCAAGCGATGTGTCAGCGAGGAGGTTGAGTTCCGAAGAGGGTGGACACGAGATCAAACAACTTTTGTTTTGAAAATCAAAGAATTTTTGTTTCGAAGATCGAAGAATTTGGTGTTGAAGATCATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCCAATTGCAATCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACGCCTAAGCACGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCGTACTCGCCCGACTACGCTTACCCTACGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCCGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTGCCATCAGGTTCGTCTCTCCGCTCTCGTCTCATTCGATTATGTTTTTCGCTATTCCACAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAAACGTCCTCAAATTTCCTCCGAAACGAAAAATCGCAAGCCCTAACCATGGTTCCATCTCTTTCTCTCTTCACTCTTTTGCCCAATGGTCAGCCCTCCGTCGGGGTTGAGCCAACCAACCATAGCTAACCTCACCAAAATCATGCATTATTTTTTTTTTTATCAAAAGTGGTTCTTAGGCCATGAAGGGACTTGGCCCTAAGTTGGCTAATTATGCACATAGCTACCTTTTAATCTTTGATAGCCTAAGGAAGGCTACAAGGATAGACCAAAAAAAACATTTTTCCAAAGGAAAAAAAAAACCCATTTCAAAAAGCTAATATTTTTCTCATTATTGTAATTAAATTTCAATTAGGAGTAATCACAACATGCTGCTTCTGTGAAGATCAGTGAATAGCTCCTGAACTCATCAGGATTAGCGATAGGGTTAAGAATATGTAGCGTTTTTGTTGCTATTATTACAAATTAATTAACTTGGTCTAATCAACCAACCCATTTCAAAATATTCCCCATGGGTTTGGGGAATGGTAATGAAACCCTTTTATTAATCAACTCTTAAGCACATTATTAGTTATTTCTTGTAATTAAACTTCACAAACAATGGTGGCTCAACTTATGGGAGTTATAGCCATGTTTATTTTTGGTAAAGGTTTTGCATTTAGGTCCCATAATTAGGAGTTAATTAGGATAGGATTAAGCATTCCATGATTTTGAGACTCCATTAATGGATATTGGAGGTCTCAAAATAAGCATTTTGCATGTGAGCCCTTGGGAGATATTTGGGTTCCCTTTGGCTTGTTCTTTCACTAACCCTAAACCAACCATGGTTAGGACTTAGGTCAACTTCATTTCTGTCTTCAATATTCCCATTTTACCCTCCTCTCTATCATCCATCCCAATCACCAATGTGTATGTGTGTTCAAGGGCTTTCTCGTCATGGAGTTGGTGGACCTTGGAAGCACTGTTTTTCATTGATTATGTCTGTAAAAGAAGAGCCTTTGTTCATGTCTTCTTATGGTTTGTAATGTAATTAGATACTCTATTACCCTTTCTTTATATCAAGACTTCTGCCTAAGATTTGGTTCTTCATTAGCTGCTTGAAGAATAACCTACGTACCTCAATATGAATTGCTTCTTTCTTTCTCTCAA

Coding sequence (CDS)

ATGTCTACTATTAGTGGGCTTAGACCATTACAAATGGTATCAGAGATAGATACCAAGCGATGTGTCAGCGAGGAGGTTGAGTTCCGAAGAGGGTGGACACGAGATCAAACAACTTTTGTTTTGAAAATCAAAGAATTTTTGTTTCGAAGATCGAAGAATTTGGTGTTGAAGATCATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCCAATTGCAATCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACGCCTAAGCACGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCGTACTCGCCCGACTACGCTTACCCTACGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCCGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTGCCATCAGGTTCGTCTCTCCGCTCTCGTCTCATTCGATTATGTTTTTCGCTATTCCACAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAAACGTCCTCAAATTTCCTCCGAAACGAAAAATCGCAAGCCCTAACCATGGTTCCATCTCTTTCTCTCTTCACTCTTTTGCCCAATGGTCAGCCCTCCGTCGGGGTTGA

Homology

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BLAST of CmoCh09G012050 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.4e-25
Identity = 96/267 (35.96%), Postives = 132/267 (49.44%), Query Frame = 1


Query: 60  TPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGF 119
           T +N+   FGDT  TKVFVGGLAW+T K+ M ++F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 120 VTFREPDAAMRACVDAAPVIDGRRANCNLASLG--VQRSKPSTPKHEKKKWELTGGGGGR 179
           VTF++  AA RAC D+ P+I+GRRANCNLASLG  +++S   T   +  K     G    
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPK----NGNRAT 122

Query: 180 NFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYG 239
              V +  Q  +     +  H          HQ +P+  YGY S    Y  P   +N   
Sbjct: 123 PPHVGNHSQWYYPSGFTNQQHQQQN------HQAVPF--YGYPS---AYVAPNMTFNQKV 182

Query: 240 GATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHH 299
           G      M G          +     +Y +  +    GGG       S    +   YP+H
Sbjct: 183 GYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMY----GGGRVMVGAASPMVPFYTVYPYH 242

Query: 300 LLQYSAALNSTPTTF--PQHYAAPPMS 323
               S A+     +F  P  ++ PP+S
Sbjct: 243 ---QSQAIGFPQPSFSKPLSFSTPPIS 247

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BLAST of CmoCh09G012050 vs. Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.4e-24
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 1


Query: 70  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 129
           DTTYTK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 130 RACVDAAPVIDGRRANCNLASLGVQ 155
           RAC D  P+IDGR+AN NLA LG +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

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BLAST of CmoCh09G012050 vs. Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-23
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1


Query: 70  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 129
           DTTYTK+FVGGL + T   +++ YFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 130 RACVDAAPVIDGRRANCNLASLGVQ 155
           RAC D  P+IDGR+AN NLA LG +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

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BLAST of CmoCh09G012050 vs. Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.2e-23
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1


Query: 70  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 129
           DTT+TK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 130 RACVDAAPVIDGRRANCNLASLGVQ 155
           RAC D  P+IDGR+AN NLA LG +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CmoCh09G012050 vs. Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-22
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1


Query: 70  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 129
           DTT+TK+FVGGL + T   +++ YFE FGDI EAVVITD+ T +S+GYGFVT  +  AA 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 130 RACVDAAPVIDGRRANCNLASLGVQ 155
           RAC D  P+IDGR+AN NLA LG +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

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BLAST of CmoCh09G012050 vs. TrEMBL
Match: A0A0A0KUN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647270 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 4.6e-138
Identity = 257/278 (92.45%), Postives = 261/278 (93.88%), Query Frame = 1


Query: 59  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 118
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 119 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGR- 178
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGR 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 179 NFRVLSS-FQTGFGGNVGSAFHS-TPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNV 238
           NFRVLSS FQ+GFGGNVGSAFHS T TFPHYAI QGIPYNLYGYSSYSPDY YPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 239 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 298
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYP 240

Query: 299 HHLLQYSAALNST-PTTFPQHYAAPPMSLPPTPPTLPS 333
           HHL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPS
Sbjct: 241 HHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS 272

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BLAST of CmoCh09G012050 vs. TrEMBL
Match: U5FH01_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09640g PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 7.0e-110
Identity = 212/278 (76.26%), Postives = 233/278 (83.81%), Query Frame = 1


Query: 59  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 118
           MTP+N+A QFGDTTYTKVFVGGLAWETQK+TMK YFEQFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 119 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 178
           FVTFREPDAAMRACVDAAPVIDGRRANCNLAS+GVQRSKPSTPKH         GG GRN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASMGVQRSKPSTPKH---------GGAGRN 120

Query: 179 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 238
           FRV+SSFQTGFGG VG+AF    +FPHYAI QG+PYN+YGYSSYSPDY YPTSYYNVYGG
Sbjct: 121 FRVMSSFQTGFGGGVGTAFPPAASFPHYAIQQGMPYNVYGYSSYSPDYTYPTSYYNVYGG 180

Query: 239 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 298
           ATAQYPMYGTG GG+++G   +AAAFYPY QFGEGSGG A  +   +  Q YGVQYP++L
Sbjct: 181 ATAQYPMYGTGHGGLMNG---SAAAFYPYLQFGEGSGGAATSYP--TSGQSYGVQYPYNL 240

Query: 299 LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL 337
            QYS A+NST   +PQHY A PMSL PT   LPSG +L
Sbjct: 241 FQYS-AINSTTGGYPQHYGA-PMSLAPT-AALPSGVTL 261

[Close]

BLAST of CmoCh09G012050 vs. TrEMBL
Match: A0A067KP04_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07989 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 9.1e-110
Identity = 208/268 (77.61%), Postives = 229/268 (85.45%), Query Frame = 1


Query: 59  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 118
           MTP+N+A QFGDTTYTKVFVGGLAWETQKDTMK YFEQFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 119 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 178
           FVTFR+P+AAM+ACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH        GGG GRN
Sbjct: 61  FVTFRDPEAAMKACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH--------GGGAGRN 120

Query: 179 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 238
           FRV+SSFQTGFGG VG+AF S  +FPHYAI QGIPYN+YGYS YSPDY+YPTSYY+VYGG
Sbjct: 121 FRVMSSFQTGFGGGVGTAFPSAASFPHYAIQQGIPYNVYGYSPYSPDYSYPTSYYSVYGG 180

Query: 239 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 298
           ATAQYPMYGTGPGG+++G   AA AFYPY QFGEG+GG A G+  G   Q YG+QYPHH+
Sbjct: 181 ATAQYPMYGTGPGGMMTG---AATAFYPYLQFGEGNGGAATGYASG---QSYGIQYPHHM 240

Query: 299 LQYSAALNSTPTTFPQHYAAPPMSLPPT 327
            QYS A+NST   +PQ Y A PMSL PT
Sbjct: 241 FQYS-AINST-GGYPQQYGA-PMSLAPT 251

[Close]

BLAST of CmoCh09G012050 vs. TrEMBL
Match: A0A061FJR7_THECC (RNA-binding family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_036007 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 1.2e-109
Identity = 214/278 (76.98%), Postives = 233/278 (83.81%), Query Frame = 1


Query: 59  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 118
           MTP+N+A QFGDTTYTKVFVGGLAWETQKDTMK YFEQFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 119 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 178
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH         GG GRN
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH---------GGTGRN 120

Query: 179 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 238
           FRV+SSFQTGFGG VG+AF S  TFPHYAI QGIPYN+YGYS YSPDY YPTSYY+VYGG
Sbjct: 121 FRVMSSFQTGFGGGVGTAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGG 180

Query: 239 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 298
           ATAQYP+YG GPGG+++G   A   FYPY QFGEG+ GGA G+T G   QGYGVQYPHH 
Sbjct: 181 ATAQYPVYGAGPGGLMTG---AGTTFYPYLQFGEGT-GGATGYTSG---QGYGVQYPHHP 240

Query: 299 LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL 337
            QYS A+NST  ++PQHY A PMSL PT P L SG ++
Sbjct: 241 FQYS-AVNST-GSYPQHYGA-PMSLAPT-PALQSGVTM 258

[Close]

BLAST of CmoCh09G012050 vs. TrEMBL
Match: A0A061FIL6_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_036007 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 1.6e-109
Identity = 211/269 (78.44%), Postives = 228/269 (84.76%), Query Frame = 1


Query: 59  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 118
           MTP+N+A QFGDTTYTKVFVGGLAWETQKDTMK YFEQFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 119 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 178
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH         GG GRN
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH---------GGTGRN 120

Query: 179 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 238
           FRV+SSFQTGFGG VG+AF S  TFPHYAI QGIPYN+YGYS YSPDY YPTSYY+VYGG
Sbjct: 121 FRVMSSFQTGFGGGVGTAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGG 180

Query: 239 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 298
           ATAQYP+YG GPGG+++G   A   FYPY QFGEG+ GGA G+T G   QGYGVQYPHH 
Sbjct: 181 ATAQYPVYGAGPGGLMTG---AGTTFYPYLQFGEGT-GGATGYTSG---QGYGVQYPHHP 240

Query: 299 LQYSAALNSTPTTFPQHYAAPPMSLPPTP 328
            QYS A+NST  ++PQHY A PMSL PTP
Sbjct: 241 FQYS-AVNST-GSYPQHYGA-PMSLAPTP 250

[Close]

BLAST of CmoCh09G012050 vs. TAIR10
Match: AT1G33470.1 (AT1G33470.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 254.2 bits (648), Expect = 1.3e-67
Identity = 152/266 (57.14%), Postives = 182/266 (68.42%), Query Frame = 1


Query: 70  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 129
           DTT+TKVFVGGLAWET K +++NYFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 130 RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNFRVLSSFQTGF 189
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H        G  GGR  +V S F+T F
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH--------GHVGGRGMKVTSPFKTHF 122

Query: 190 GGNVGSAFHSTPTFPHYAIHQGIPY-NLYGYSSYSPDYAYPT-SYYNVYGGATAQYPMYG 249
            G   +A  S   F HY     +PY N +G+SSYS DY YPT SYYNVYGGATAQ+PMYG
Sbjct: 123 -GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMYG 182

Query: 250 TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHHLLQYSAALN 309
           +GP  +   AAA AA FYPY QF EG+G             GY  + YP+H+  YSA   
Sbjct: 183 SGP--MTGVAAAPAAGFYPYLQFAEGNG----------PVTGYAPLHYPNHMFHYSAPGG 237

Query: 310 STPTTFPQHYAAPPMSLPPTPPTLPS 333
           + P     H+   P+SL P+ P +PS
Sbjct: 243 NYP-----HHNGSPVSLAPS-PVIPS 237

[Close]

BLAST of CmoCh09G012050 vs. TAIR10
Match: AT1G22910.3 (AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 226.1 bits (575), Expect = 3.8e-59
Identity = 149/270 (55.19%), Postives = 171/270 (63.33%), Query Frame = 1


Query: 69  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 128
           GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 129 MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGR--NFRV-LSSF 188
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H         GGGGR  N RV +S+ 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH---------GGGGRINNMRVMMSTM 127

Query: 189 QTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDY-AYPTSYYNVYGGAT-AQY 248
           QTGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY
Sbjct: 128 QTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 187

Query: 249 PMYG--TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQY 308
            +YG     GG L+ AAA+A  FYP        GGG  G      Q  Y     HHL  Y
Sbjct: 188 GVYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY-----HHLSSY 247

Query: 309 SAALNSTPTTFPQHYAAPPMSLPPTPPTLP 332
           +    S PT   Q  +   +S   T  +LP
Sbjct: 248 NPHHYSPPTFSMQQGSRNRLSASTTSYSLP 250

[Close]

BLAST of CmoCh09G012050 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 168.3 bits (425), Expect = 9.5e-42
Identity = 124/281 (44.13%), Postives = 160/281 (56.94%), Query Frame = 1


Query: 70  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 129
           DT  TK+FVGGLAWETQ+DTM+ YFEQFG+I+EAVVITDK TGRSKGYGFVTF+E +AAM
Sbjct: 18  DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77

Query: 130 RACVDAAPVIDGRRANCNLASLGVQRSKPST-PKHEKKKWELTGGGGGRNFRVLSSFQTG 189
           RAC +  PVIDGRRANCNLA LG Q+ +P T P+H   ++   G G G    +++     
Sbjct: 78  RACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVG----LVAPSPQF 137

Query: 190 FGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYN--VYGGATAQYPMY 249
            G +  SAF       H A     PY+ YG+S YS +  YP +YYN  +YGG   Q+  Y
Sbjct: 138 RGSSSSSAFVHQQQQQHTA-QFPFPYSTYGFSGYSQEGMYPMNYYNHHLYGG--QQFSPY 197

Query: 250 GTGPGGILSGAAAAAAAFYPYF-QFGEG-SGGGANGFTGGSGQQGYGVQY----PHHLLQ 309
              P    +G+      FYPY+ Q+    S   A         QG+  QY       LLQ
Sbjct: 198 MGHPS---AGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQYTAPPAPPLLQ 257

Query: 310 YSAALNSTPTTFPQHYAA-----PPMSLPPT-PPTLPSGSS 336
           Y    +    +  Q +++     P +SLP +   +LPS SS
Sbjct: 258 YPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSS 288

[Close]

BLAST of CmoCh09G012050 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 164.9 bits (416), Expect = 1.0e-40
Identity = 125/271 (46.13%), Postives = 154/271 (56.83%), Query Frame = 1


Query: 66  SQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREP 125
           S FGDTT+TKVFVGGLAWETQ +T++ +F+Q+GDILEAVVITDK TGRSKGYGFVTFR+P
Sbjct: 16  SPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDP 75

Query: 126 DAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGR---NFRVL 185
           +AA RACVD  P+IDGRRANCNLASLG  RS+P        ++ +     GR       +
Sbjct: 76  EAARRACVDPTPIIDGRRANCNLASLG--RSRP------PMQYAVIPHAPGRVRPPSPYV 135

Query: 186 SSFQTGFGGNVGS-AFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTS--YYNVYGGA 245
            S Q+  G + GS  +H  PT   Y   QG+ Y  YG + Y PDY Y  S  +Y  Y G 
Sbjct: 136 GSVQSPRGLHFGSHPYHQPPT---YNYQQGVVYP-YGVTPYGPDYMYSQSQGFYGPYMG- 195

Query: 246 TAQY-PMYGTGPGGILSGAAAAAAAFYPYFQFGEGSG--GGANGFTGGSGQQGYGVQYPH 305
             QY  +YG  PG + S          P +Q+G+ S    GA+G+T G G    G     
Sbjct: 196 -QQYLQVYGV-PGAVNS----------PGYQYGQLSHTIPGAHGYTAGQGYSHPG----S 250

Query: 306 HLLQYSAALNSTPTTFPQHYAAPPMSLPPTP 328
           H+LQ  A       T P      P   P  P
Sbjct: 256 HVLQLGA-------TSPMSAIQSPYPSPSAP 250

[Close]

BLAST of CmoCh09G012050 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 162.2 bits (409), Expect = 6.8e-40
Identity = 124/286 (43.36%), Postives = 158/286 (55.24%), Query Frame = 1


Query: 66  SQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREP 125
           S FGDTT+TKVFVGGLAWETQ +T++ +FEQ+G+ILEAVVI DK TGRSKGYGFVTFR+P
Sbjct: 16  SPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDP 75

Query: 126 DAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNFRVLSSF 185
           +AA RAC D  P+IDGRRANCNLASLG  R +P  P      + +     GR  R  S +
Sbjct: 76  EAARRACADPTPIIDGRRANCNLASLG--RPRPPLP------YAVIPNMPGR-LRPASPY 135

Query: 186 QTGFGGNVGSAFHSTPTFPHYAIHQGIPYNL-------YGYSSYSPDYAYPTS--YYNVY 245
                G  GS         +Y   Q +PYN        YG ++Y P+Y Y  S   Y+ Y
Sbjct: 136 IGNVQGPRGS------LIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPY 195

Query: 246 GGATAQY-PMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 305
            G   QY  +YG  PG + S          P +Q+G+ S    NG  G +  QGY V   
Sbjct: 196 MG--QQYLQVYGV-PGAVNS----------PVYQYGQLSQTIPNGH-GYTAVQGYSVP-G 255

Query: 306 HHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSLRSRLI 342
            H+LQ      ST TT     ++ P    P P  +P  + ++S +I
Sbjct: 256 SHILQLGGPTVSTMTT-----SSMPALQAPYPSGIPGPAPVQSHII 266

[Close]

BLAST of CmoCh09G012050 vs. NCBI nr
Match: gi|659119151|ref|XP_008459503.1| (PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo])

HSP 1 Score: 502.3 bits (1292), Expect = 7.8e-139
Identity = 258/282 (91.49%), Postives = 264/282 (93.62%), Query Frame = 1


Query: 59  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 118
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 119 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGR- 178
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGR 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 179 NFRVLSS-FQTGFGGNVGSAFHS-TPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNV 238
           NFRVLSS FQ+GFGGNVGSAFHS T TFPHYAI QGIPYNLYGYSSYSPDY YPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 239 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 298
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYP 240

Query: 299 HHLLQYSAALNST-PTTFPQHYAAPPMSLPPTPPTLPSGSSL 337
           HHL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPSG ++
Sbjct: 241 HHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTM 276

[Close]

BLAST of CmoCh09G012050 vs. NCBI nr
Match: gi|659119153|ref|XP_008459504.1| (PREDICTED: RNA-binding protein 24 isoform X2 [Cucumis melo])

HSP 1 Score: 499.2 bits (1284), Expect = 6.6e-138
Identity = 257/278 (92.45%), Postives = 261/278 (93.88%), Query Frame = 1


Query: 59  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 118
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 119 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGR- 178
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGR 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 179 NFRVLSS-FQTGFGGNVGSAFHS-TPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNV 238
           NFRVLSS FQ+GFGGNVGSAFHS T TFPHYAI QGIPYNLYGYSSYSPDY YPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 239 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 298
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYP 240

Query: 299 HHLLQYSAALNST-PTTFPQHYAAPPMSLPPTPPTLPS 333
           HHL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPS
Sbjct: 241 HHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS 272

[Close]

BLAST of CmoCh09G012050 vs. NCBI nr
Match: gi|659119155|ref|XP_008459505.1| (PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo])

HSP 1 Score: 477.6 bits (1228), Expect = 2.1e-131
Identity = 250/282 (88.65%), Postives = 256/282 (90.78%), Query Frame = 1


Query: 59  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 118
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 119 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGR- 178
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKH        GGGGGR 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH--------GGGGGRN 120

Query: 179 NFRVLSS-FQTGFGGNVGSAFHS-TPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNV 238
           NFRVLSS FQ+GFGGNVGSAFHS T TFPHYAI QGIPYNLYGYSSYSPDY YPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 239 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 298
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYP 240

Query: 299 HHLLQYSAALNST-PTTFPQHYAAPPMSLPPTPPTLPSGSSL 337
           HHL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPSG ++
Sbjct: 241 HHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTM 268

[Close]

BLAST of CmoCh09G012050 vs. NCBI nr
Match: gi|659119157|ref|XP_008459506.1| (PREDICTED: RNA-binding protein 24 isoform X4 [Cucumis melo])

HSP 1 Score: 474.6 bits (1220), Expect = 1.8e-130
Identity = 249/278 (89.57%), Postives = 253/278 (91.01%), Query Frame = 1


Query: 59  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 118
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 119 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGR- 178
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKH        GGGGGR 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH--------GGGGGRN 120

Query: 179 NFRVLSS-FQTGFGGNVGSAFHS-TPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNV 238
           NFRVLSS FQ+GFGGNVGSAFHS T TFPHYAI QGIPYNLYGYSSYSPDY YPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 239 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 298
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG      GGSGQQGYGVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG------GGSGQQGYGVQYP 240

Query: 299 HHLLQYSAALNST-PTTFPQHYAAPPMSLPPTPPTLPS 333
           HHL QYSAA+NST  TTFPQHYAAPPMSLPPTPPTLPS
Sbjct: 241 HHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS 264

[Close]

BLAST of CmoCh09G012050 vs. NCBI nr
Match: gi|743928753|ref|XP_011008590.1| (PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica])

HSP 1 Score: 406.0 bits (1042), Expect = 7.7e-110
Identity = 213/278 (76.62%), Postives = 232/278 (83.45%), Query Frame = 1


Query: 59  MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 118
           MTPSN+A QFGDTTYTKVFVGGLAWETQK+TMK YFEQFG+ILEAVVI DKATGRSKGYG
Sbjct: 1   MTPSNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVIADKATGRSKGYG 60

Query: 119 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 178
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKH         G  GRN
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH---------GAAGRN 120

Query: 179 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 238
           FRV+SSFQTGFGG VG+AF S  +FPHYAI QGIPYN+YGYSSYSPDY YP SYYN+YGG
Sbjct: 121 FRVMSSFQTGFGGGVGTAFPSAASFPHYAIQQGIPYNVYGYSSYSPDYTYPASYYNMYGG 180

Query: 239 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 298
           ATAQYPMYGTG GG+++GAAAA   FYPY Q GEGS GGA  ++  SGQ  YGVQYPHHL
Sbjct: 181 ATAQYPMYGTGHGGMMNGAAAA---FYPYLQIGEGSTGGATSYSTTSGQS-YGVQYPHHL 240

Query: 299 LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSL 337
            QYS ++NST   +PQHY A PMSL PT   LPSG ++
Sbjct: 241 FQYS-SINSTTGGYPQHYGA-PMSLAPT-AALPSGVTM 262

The following BLAST results are available for this feature:

BLAST of CmoCh09G012050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARP1_ARATH	3.4e-25	35.96	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1	[more]
RB24B_XENLA	6.4e-24	62.35	RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1	[more]
RBM24_DANRE	1.4e-23	61.18	RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1	[more]
RBM38_XENTR	4.2e-23	61.18	RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1	[more]
RBM38_XENLA	2.1e-22	60.00	RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2	[more]

BLAST of CmoCh09G012050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUN6_CUCSA	4.6e-138	92.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647270 PE=4 SV=1	[more]
U5FH01_POPTR	7.0e-110	76.26	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09640g PE=4 SV=1	[more]
A0A067KP04_JATCU	9.1e-110	77.61	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07989 PE=4 SV=1	[more]
A0A061FJR7_THECC	1.2e-109	76.98	RNA-binding family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_036007...	[more]
A0A061FIL6_THECC	1.6e-109	78.44	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_036007 PE=4 SV=1	[more]

BLAST of CmoCh09G012050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33470.1	1.3e-67	57.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	3.8e-59	55.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46780.1	9.5e-42	44.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.0e-40	46.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	6.8e-40	43.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh09G012050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119151\|ref\|XP_008459503.1\|	7.8e-139	91.49	PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo]	[more]
gi\|659119153\|ref\|XP_008459504.1\|	6.6e-138	92.45	PREDICTED: RNA-binding protein 24 isoform X2 [Cucumis melo]	[more]
gi\|659119155\|ref\|XP_008459505.1\|	2.1e-131	88.65	PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo]	[more]
gi\|659119157\|ref\|XP_008459506.1\|	1.8e-130	89.57	PREDICTED: RNA-binding protein 24 isoform X4 [Cucumis melo]	[more]
gi\|743928753\|ref\|XP_011008590.1\|	7.7e-110	76.62	PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012050.1	CmoCh09G012050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 76..131 score: 2.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 75..147 score: 9.9
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 74..158 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 65..177 score: 1.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 73..161 score: 8.28
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 319..339 score: 1.5E-35coord: 70..155 score: 1.5
None	No IPR available	PANTHER	PTHR24012:SF421	SUBFAMILY NOT NAMED	coord: 319..339 score: 1.5E-35coord: 70..155 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G012050	Cucsa.237790	Cucumber (Gy14) v1	cgycmoB0659
CmoCh09G012050	CmaCh09G012030	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G012050	CmaCh01G008830	Cucurbita maxima (Rimu)	cmacmoB441
CmoCh09G012050	Cla012381	Watermelon (97103) v1	cmowmB012
CmoCh09G012050	Csa5G647270	Cucumber (Chinese Long) v2	cmocuB021
CmoCh09G012050	MELO3C022120	Melon (DHL92) v3.5.1	cmomeB001
CmoCh09G012050	ClCG08G001810	Watermelon (Charleston Gray)	cmowcgB028
CmoCh09G012050	CSPI05G30320	Wild cucumber (PI 183967)	cmocpiB021
CmoCh09G012050	Lsi08G001800	Bottle gourd (USVL1VR-Ls)	cmolsiB026
CmoCh09G012050	Cp4.1LG02g09740	Cucurbita pepo (Zucchini)	cmocpeB021
CmoCh09G012050	Cp4.1LG06g09720	Cucurbita pepo (Zucchini)	cmocpeB035
CmoCh09G012050	MELO3C022120.2	Melon (DHL92) v3.6.1	cmomedB001
CmoCh09G012050	CsaV3_5G039420	Cucumber (Chinese Long) v3	cmocucB0025
CmoCh09G012050	Cla97C08G145920	Watermelon (97103) v2	cmowmbB029
CmoCh09G012050	Bhi06G000120	Wax gourd	cmowgoB0002
CmoCh09G012050	CsGy5G029720	Cucumber (Gy14) v2	cgybcmoB552
CmoCh09G012050	Carg27049	Silver-seed gourd	carcmoB0036

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G012050	CmoCh01G009270	Cucurbita moschata (Rifu)	cmocmoB024

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G012050	Cucurbita maxima (Rimu)	cmacmoB030
CmoCh09G012050	Bottle gourd (USVL1VR-Ls)	cmolsiB022