Carg27049 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27049
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_205 : 22105 .. 27344 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAATTATAGTAATATATATTTTATTTTATTTTATTTTTTATTTATAATTTGTTGCTGTCAAAGTTTTGCTTTCCCTTCCCTCCTTCCCTCACTTTCTCCTTTGTTCTCATCTCTGACCTAATTCTCTTCTTCTTCTTCCTCTTCACAAACAAAAACTTGAAGGATTTTGTTGGGTTTTGAAGATCAAACAACTTTTGTTTTGAAAATCGAAGAATTTTTGTTTCGAAGATCGAAGAATTTGGTGTTGAAGATCATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACGTACACCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTAATCATTTTCTTCTAATTTCTCCATCTTGTTGTTCTTGTTCTTGTTCTTCTTCCATTTACTCTTTTCCTTTTTCGCTTTTAGGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCCAATTGCAATCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACACCTAAACACGGTATATTCACGTTTCTATACTCAGATCTATTGATTTTGATATTGCATGATATTGTCTACTTTGAATATAAAGCTCTCGTGACTTTACTTTTAGTTTTATCGAGATAGTGTTTGTTACTGTGAGATCCACATCAGTTGAAGAGGAGAACGAAACACCTTTATTAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAATACCTTGAGGGTAAGCCCAAAAGGGAAAGCCCAAAGAGAACAGTATCTGCTAGCGGTGACTTTAAATACCCTTTATAAGGACAGGGAAACCTCTCTCTAGCAGATGCGTTTTGAAGGTAAACCCGAAAGGGAAAGCCCGAGATAGTGTCTGTTATTGTAAGATCTCACACTCTCGATAAGGGTTTGGAAACCTCTCTCTAGTAGACGCGTTTTAAAAGCTTTGAGGGTAAACTAAAAAAAACAATATCTGCTAGCGGTGAGCTTAGATCGTTACAGTAACTTGTATACTTACGATGATTTAGATGTTTGTTTATGTGTTTGATTTTGTGTTTAAAGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTCTCTACAACGTGACTTGCCAACTCATATATTCACTTTAATTTATGACTAAGAATAAAGTTTTTATTTTTGCTTCATAATTACTCTAAATTAATTGATATCATTTCCTATATTCATATAATGCATTAAATTCTCCTTTCCTTTTGTTCTTTCCATTCCTTTGTATTAATGCATGCATGGGATTGCATGGATTTGTGAATAATTGGGTAATTGTTAATATCGTTGCTTGTTTAGGTACTCTTCGTACTCGCCCGACTACGCTTACCCTACGGTTCGTACAAACCTTTCTTGTTCTTCAGATTATTTTCAGTTTTGAGTATCATTGTTAGGAATGACGACTCTCCACAGTGGTATGATATTGTCCACTTTGAGCTTAAGCTCTCGTGGGTTTGTTTTGGACTTTCTAAAGACCTCGTATCGATGGAGATATATTCCTTACGTATAAATCCATGATCAATTTTGTGAGATCCCACATCGATTGGGGAGGAAAACGAAACACCGTTTATAAGGGTGTGGAAACCTTTCCTTAGCATACGTGTTTTAAAAACCTTGAGGGAAAACCCTAAGAGAAAAATATCTGCTAGCGGTGTGCTTGAGCTGTTATAAATGGTATCAAAGCCAGACACTGAGCGATGTGCCAGCAAAGAGGCTGAGCTCCGAAGGGGTGGACACTAGGCAATGTGTCAGCAAGAATGCTGGCCCTAAAGGGGGGTGGATTGAATGGGTCATACATTGATTGGAGAAGGGGACGAGTGTCAGCGAGAACGTTGGGCCCCGAAGGTCCCACATTGATTGGAGAAGGGAATGGGTGCCAGCGACGACGTTGGGTCCTGAAAGGGTGGATTGTGAGATCCCACATTGGTTGGGGAGGAGAACAAGACACCCTTTATAAGGGTGTAGAAACCATTTCTTATCAAACCCGTTTTCAAAACCTTAAGGGAAAACCCAAAAGGAAAATCTCAAAGAGAACAATATTTGCTAGCGGTGTGCTTGAACTGTTACAATTCCTTAAATTATCCAATGTGAGATTGCATCCCGACAATCTTTAACCATCATGAAATTCACAAAGAATAGTTGAAGTAATGGAATGGAATAAATATTTAAGAAGAAAAAAGAAACAAAAAAAAATTAAAAGGGTTTTGAATAAGGACGGTAAAATTTTAATATTCCTTAGGGTGGAAGAATCTGTGTCATTGCGTGGTGGTCAAACTGTTGAAAAAGTGAAAGTTAAAAGAGACCAAATCAGTGCTTCCTTCTCTTGTCGTTTGACCCGACAGTTTTTGTTTCTACATTTATTATTTTGTAACAGTAAATCACTTTTTTTACAGTTTTTTTTTATGGTTTTATTGTTACGGTTTTTGTTACACGTTCTTTCATGCATGTAATCATGTAAGTTCAAATTAAAAAACAAAATTAAAATAGAGGAGAGTTTACCCTCTTATAAAGAATGTTTCGGGATCCAGCGTCCTTGTTAGCATATCGCCTCGTATCTTGAACTTTCTCGTTGGGATATTTTTCCATGTCTAGCTCTGATGTTATTTATAACAACCCAAGTCCACCGTTAGCAGATATTGTCCTCTTTGAAATTTTCCTTCCAAGCTTCCCCTCAAAATTTTAAAACGCGTCGATTAGAAAGATGTTGCCACACATTTATAAAGAATGTTTCGTTCTCCTTCTCAACGATGTGGGATCTCACAATATCAGAGTTGTGTTGAGTTGGGAAAATCTTTTGGATTTGGGTTGGTTAGATTGATGGCTCGATTAACCTAAATACAACTTACAACCGAACCCCAAATTGGGTTGAGGCTGGGTTGACGGATTTTTTTAAATTATTTAAAAAAATTTTGTTTCTTCACCGTGCATATTACATTAATAACTAAAATTTCATAAATTTAAAATATCAAACATTTACAAAAAACGTCAAATATTTTTTGTCTCAAAAAAATTTAACTTAAACAGTAAAAAGAAAATTATAATTCAACCCGACCTTTATTATATTATTATTTATACGAGGAGTTTTTTTTAATTAATTTCCAGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCCGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTGCCATCAGGTTCGTCTCTCCGCTCTCGTCTCATTCGATTAGTTTAAAACAATTATATTCATCTTCGTAAATAAAAATAAAATAAATAAAATAATTATCAAACGAACTAATGGTTAAGAATATTTAGCCTTCTATTATAGTTTAGATTAAAAATGAAGCTATGATATGTTAAGAATGAGAAACTCTGATACTATGTTAAGAATAATGTTCTGATATCATGTTAATAATGAGAAGCTCTGATACATGTTAAGAGGTATCATAAGAATGATGCTCATGCTCTTATACCATGTTAAAAATGAGAAGCTCTGATATCATGCTAAGAATGTTGCTCTGATACCATGTGAAGAATGATACTCTGATACCATGTTAAGAATGAGAAACAAAAGTGAGATTGAAAGTTCGAGAAATATTAGATGGAATCGAAAGTCCAAGAAAGTGGGAATCTATGATTGAAAGTCCAAGAAAGTGGGATCGAAAGTACGGTGAAATAAGAGAAAATATTCTACTAATGAAATCCCGAAGATAAGATAAATAGTTTATCATAATTACATATTTGACCTTTTATCATATTTACCCTCCTTTCCATTTACCTCGGTAATTTATTTGATGATTATAAATAGAGAATTTTCACCACCGTTTAGGTGGGGTAGTTTTAGCAAATATTCTCACTAATATCTTTGTATCTTTGACAGTGTTTTTCGCTATTCCACAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAAACGTCCTCAAATTTCCTCCGAAACGAAAAATCGCAAGCCCTAACCATGGTTCCATCTCTTTCTCTCTTCACTCTTTTGGCCAATGGTCAGCCCTCCGTCGGGGTTGAGCCAACCAACCATAGCTAACCTCACCAAAATCATGCATTATTTTTTTTTTTTTATCAAAAGTGGTTCTTAGGCCATGAAGGGACTTGGCCTAAGTTGGCTAATTATGCACATAGCTACGTTTTAATCTTTGATAGCCTAAGGAAGGCTACAAGGATAGACCAAAAAAACATTTTTCCAAAGGAAAAAAAAAACCCATTTCAAAAAGCTAATATTTTTCTCATTATTGTAATTAAATTTCAATTAGGAGTAATCACAGCATGCTGCTTCGGTGAAGATCAGCAAATAGCTCCTGAACTCATCAGGATTAGCGCTAGGGTTAAGAATATGTAGCGTTTTTGTTGCTATTATTACAAATTAATTAACTTGGTCTAATCAACCAACCCATTTCAAAATATTCCCCATGGGTTTGGGGAATGGTAATGAAACCCTTTTATTAATCAACTCTTAAGCACATTATTAGTTATTTCTTGTAATTAAACTTCACAAACAATGGTGGCTCAACTTATGGGAGTTATAGCCATGTTTATTTTTGGTAAAGGTTTTGCATTTAGGTCCCATAATTAGGAGTTAATTAGGATAGGATTAAGCATTCCATGATTTTGAGACTCCATTAATGGATATTGGAGGTCTCAAAATAAGCATTTTGCATGT

mRNA sequence

AAAATAATTATAGTAATATATATTTTATTTTATTTTATTTTTTATTTATAATTTGTTGCTGTCAAAGTTTTGCTTTCCCTTCCCTCCTTCCCTCACTTTCTCCTTTGTTCTCATCTCTGACCTAATTCTCTTCTTCTTCTTCCTCTTCACAAACAAAAACTTGAAGGATTTTGTTGGGTTTTGAAGATCAAACAACTTTTGTTTTGAAAATCGAAGAATTTTTGTTTCGAAGATCGAAGAATTTGGTGTTGAAGATCATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACGTACACCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCCGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTGCCATCAGTGTTTTTCGCTATTCCACAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAAACGTCCTCAAATTTCCTCCGAAACGAAAAATCGCAAGCCCTAACCATGGTTCCATCTCTTTCTCTCTTCACTCTTTTGGCCAATGGTCAGCCCTCCGTCGGGGTTGAGCCAACCAACCATAGCTAACCTCACCAAAATCATGCATTATTTTTTTTTTTTTATCAAAAGTGGTTCTTAGGCCATGAAGGGACTTGGCCTAAGTTGGCTAATTATGCACATAGCTACGTTTTAATCTTTGATAGCCTAAGGAAGGCTACAAGGATAGACCAAAAAAACATTTTTCCAAAGGAAAAAAAAAACCCATTTCAAAAAGCTAATATTTTTCTCATTATTGTAATTAAATTTCAATTAGGAGTAATCACAGCATGCTGCTTCGGTGAAGATCAGCAAATAGCTCCTGAACTCATCAGGATTAGCGCTAGGGTTAAGAATATGTAGCGTTTTTGTTGCTATTATTACAAATTAATTAACTTGGTCTAATCAACCAACCCATTTCAAAATATTCCCCATGGGTTTGGGGAATGGTAATGAAACCCTTTTATTAATCAACTCTTAAGCACATTATTAGTTATTTCTTGTAATTAAACTTCACAAACAATGGTGGCTCAACTTATGGGAGTTATAGCCATGTTTATTTTTGGTAAAGGTTTTGCATTTAGGTCCCATAATTAGGAGTTAATTAGGATAGGATTAAGCATTCCATGATTTTGAGACTCCATTAATGGATATTGGAGGTCTCAAAATAAGCATTTTGCATGT

Coding sequence (CDS)

ATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACGTACACCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCCGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTGCCATCAGTGTTTTTCGCTATTCCACAGGCGTGA

Protein sequence

MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDDWIWRECWLSFSFNTNFPSLCYPPRDPLQSLWSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSVFFAIPQA

Homology

[Close]

BLAST of Carg27049 vs. NCBI nr
Match: XP_022930184.1 (RNA-binding protein 24 isoform X6 [Cucurbita moschata] >XP_022974079.1 RNA-binding protein 24 isoform X6 [Cucurbita maxima])

HSP 1 Score: 258.1 bits (658), Expect = 2.8e-65
Identity = 199/282 (70.57%), Postives = 200/282 (70.92%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVID------------------------DWIWRECWLSFSFN 120
           FVTFREPDAAMRACVDAAPVID                            R   +  SF 
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNFRVLSSFQ 120

Query: 121 TNF----------------------------------PSLCYPPRDPLQSLWSYYNVYGG 180
           T F                                  P   YP         SYYNVYGG
Sbjct: 121 TGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT--------SYYNVYGG 180

Query: 181 ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXGGSGQQGYGVQYPHHL 225
           ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXX GGSGQQGYGVQYPHHL
Sbjct: 181 ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXTGGSGQQGYGVQYPHHL 240

[Close]

BLAST of Carg27049 vs. NCBI nr
Match: XP_022930180.1 (RNA-binding protein 38 isoform X2 [Cucurbita moschata] >XP_022974075.1 RNA-binding protein 38 isoform X2 [Cucurbita maxima])

HSP 1 Score: 256.1 bits (653), Expect = 1.1e-64
Identity = 200/290 (68.97%), Postives = 201/290 (69.31%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVID--------------------------DWI------WRE 120
           FVTFREPDAAMRACVDAAPVID                           W        R 
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 CWLSFSFNTNF----------------------------------PSLCYPPRDPLQSLW 180
             +  SF T F                                  P   YP         
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT-------- 180

Query: 181 SYYNVYGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXGGSGQQGY 225
           SYYNVYGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXX GGSGQQGY
Sbjct: 181 SYYNVYGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXTGGSGQQGY 240

[Close]

BLAST of Carg27049 vs. NCBI nr
Match: XP_022930183.1 (RNA-binding protein 38 isoform X5 [Cucurbita moschata] >XP_022974078.1 RNA-binding protein 38 isoform X5 [Cucurbita maxima])

HSP 1 Score: 255.4 bits (651), Expect = 1.8e-64
Identity = 171/252 (67.86%), Postives = 172/252 (68.25%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVID----------------------DWIWRECWLSFSFNTN 120
           FVTFREPDAAMRACVDAAPVID                          R   +  SF T 
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVLSSFQTG 120

Query: 121 F----------------------------------PSLCYPPRDPLQSLWSYYNVYGGAT 180
           F                                  P   YP         SYYNVYGGAT
Sbjct: 121 FGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT--------SYYNVYGGAT 180

Query: 181 AQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXGGSGQQGYGVQYPHHLLQ 197
           AQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXX GGSGQQGYGVQYPHHLLQ
Sbjct: 181 AQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXTGGSGQQGYGVQYPHHLLQ 240

[Close]

BLAST of Carg27049 vs. NCBI nr
Match: XP_023535743.1 (RNA-binding protein 38-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.4 bits (651), Expect = 1.8e-64
Identity = 199/288 (69.10%), Postives = 201/288 (69.79%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVID--------------------------DWI----WRECW 120
           FVTFREPDAAMRACVDAAPVID                           W      R   
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGRNFR 120

Query: 121 LSFSFNTNF----------------------------------PSLCYPPRDPLQSLWSY 180
           +  SF T F                                  P   YP         SY
Sbjct: 121 VLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT--------SY 180

Query: 181 YNVYGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXGGSGQQGYGV 225
           YNVYGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXX GGSGQQGYGV
Sbjct: 181 YNVYGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXTGGSGQQGYGV 240

[Close]

BLAST of Carg27049 vs. NCBI nr
Match: XP_022930182.1 (RNA-binding protein 38 isoform X4 [Cucurbita moschata] >XP_022974077.1 RNA-binding protein 38 isoform X4 [Cucurbita maxima])

HSP 1 Score: 255.0 bits (650), Expect = 2.4e-64
Identity = 171/253 (67.59%), Postives = 172/253 (67.98%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVID-----------------------DWIWRECWLSFSFNT 120
           FVTFREPDAAMRACVDAAPVID                           R   +  SF T
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVLSSFQT 120

Query: 121 NF----------------------------------PSLCYPPRDPLQSLWSYYNVYGGA 180
            F                                  P   YP         SYYNVYGGA
Sbjct: 121 GFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT--------SYYNVYGGA 180

Query: 181 TAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXGGSGQQGYGVQYPHHLL 197
           TAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXX GGSGQQGYGVQYPHHLL
Sbjct: 181 TAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXTGGSGQQGYGVQYPHHLL 240

[Close]

BLAST of Carg27049 vs. TAIR10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 141.4 bits (355), Expect = 7.0e-34
Identity = 91/230 (39.57%), Postives = 113/230 (49.13%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TKVFVGGLAWET K +++NYFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDDWI------------------------WRECWLSFSFNTNFPSLCYPPR 131
           +ACVD APVID                            R   ++  F T+F +      
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGRGMKVTSPFKTHFGTAATAIP 122

Query: 132 DPL-----------------------QSLWSYYNVYGGATAQYPMYGTGPGGILSGAXXX 191
            PL                           SYYNVYGGATAQ+PMYG+GP   ++ A   
Sbjct: 123 SPLPFSHYTLPYTNXXXXXXXXXDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAA--- 182

Query: 192 XXXXXXXXXXXXXXXXXXXXXXGGSGQQGYG-VQYPHHLLQYSAALNSTP 194
                                 G     GY  + YP+H+  YSA   + P
Sbjct: 183 ---------PAAGFYPYLQFAEGNGPVTGYAPLHYPNHMFHYSAPGGNYP 220

[Close]

BLAST of Carg27049 vs. TAIR10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 131.3 bits (329), Expect = 7.2e-31
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 8  SQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREP 67
          S FGDTT+TKVFVGGLAWETQ +T++ +F+Q+GDILEAVVITDK TGRSKGYGFVTFR+P
Sbjct: 16 SPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDP 75

Query: 68 DAAMRACVDAAPVID 83
          +AA RACVD  P+ID
Sbjct: 76 EAARRACVDPTPIID 90

[Close]

BLAST of Carg27049 vs. TAIR10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 131.3 bits (329), Expect = 7.2e-31
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 11 GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
          GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8  GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71 MRACVDAAPVID 83
            ACVDA PVID
Sbjct: 68 RSACVDATPVID 79

[Close]

BLAST of Carg27049 vs. TAIR10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-29
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 8  SQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREP 67
          S FGDTT+TKVFVGGLAWETQ +T++ +FEQ+G+ILEAVVI DK TGRSKGYGFVTFR+P
Sbjct: 16 SPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDP 75

Query: 68 DAAMRACVDAAPVID 83
          +AA RAC D  P+ID
Sbjct: 76 EAARRACADPTPIID 90

[Close]

BLAST of Carg27049 vs. TAIR10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 124.4 bits (311), Expect = 8.8e-29
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 8  SQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREP 67
          S FGDTTYTKVFVGGLAWET  D M+ YFEQFG+ILEAV+ITDK TG+SKGYGFVTFRE 
Sbjct: 9  SPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRES 68

Query: 68 DAAMRACVDAAPVID 83
          D+A RA  D  PVID
Sbjct: 69 DSATRAVADPNPVID 83

[Close]

BLAST of Carg27049 vs. Swiss-Prot
Match: sp|Q9M1S3|ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.9e-23
Identity = 49/81 (60.49%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 2  TPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGF 61
          T +N+   FGDT  TKVFVGGLAW+T K+ M ++F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3  TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 62 VTFREPDAAMRACVDAAPVID 83
          VTF++  AA RAC D+ P+I+
Sbjct: 63 VTFKDAKAATRACEDSTPIIN 83

[Close]

BLAST of Carg27049 vs. Swiss-Prot
Match: sp|Q62176|RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 3  PSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFV 62
          PS M     DTT+TK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFV
Sbjct: 19 PSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78

Query: 63 TFREPDAAMRACVDAAPVID 83
          T  +  AA RAC D  P+ID
Sbjct: 79 TMADRAAADRACKDPNPIID 98

[Close]

BLAST of Carg27049 vs. Swiss-Prot
Match: sp|Q6GQD3|RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-19
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
          DTTYTK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVID 83
          RAC D  P+ID
Sbjct: 67 RACKDPNPIID 77

[Close]

BLAST of Carg27049 vs. Swiss-Prot
Match: sp|Q9I8B3|RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-19
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
          DTTYTK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVID 83
          RAC D  P+ID
Sbjct: 67 RACKDPNPIID 77

[Close]

BLAST of Carg27049 vs. Swiss-Prot
Match: sp|Q5ZMA3|RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-19
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
          DTTYTK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVID 83
          RAC D  P+ID
Sbjct: 67 RACKDPNPIID 77

[Close]

BLAST of Carg27049 vs. TrEMBL
Match: tr|A0A1S4E2D8|A0A1S4E2D8_CUCME (RNA-binding protein 24 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.1e-53
Identity = 157/278 (56.47%), Postives = 166/278 (59.71%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDD----------WIWRE----------------CWLSFS 120
           FVTFREPDAAMRACVDA+PVID            + R                   LS +
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNNFRVLSSN 120

Query: 121 FNTNF----------PSLCYPPRDPLQSL-----------------WSYYNVYGGATAQY 180
           F + F          P+  +P     Q +                  SYYNVYGGATAQY
Sbjct: 121 FQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNVYGGATAQY 180

Query: 181 PMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXGGSGQQGYGVQYPHHLLQYSA 225
           PMYGTGPGGILSGA      XXXXXXXXXXXXXXXXXXX        GVQYPHHL QYSA
Sbjct: 181 PMYGTGPGGILSGA------XXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYPHHLFQYSA 240

[Close]

BLAST of Carg27049 vs. TrEMBL
Match: tr|A0A1S4E2E6|A0A1S4E2E6_CUCME (RNA-binding protein 24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.2e-53
Identity = 157/286 (54.90%), Postives = 167/286 (58.39%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVID--------------------DWIWRECW---------- 120
           FVTFREPDAAMRACVDA+PVID                        ++ W          
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 ----LSFSFNTNF----------PSLCYPPRDPLQSL-----------------WSYYNV 180
               LS +F + F          P+  +P     Q +                  SYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXGGSGQQGYGVQYP 225
           YGGATAQYPMYGTGPGGILSGA      XXXXXXXXXXXXXXXXXXX        GVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGA------XXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYP 240

[Close]

BLAST of Carg27049 vs. TrEMBL
Match: tr|A0A0A0KUN6|A0A0A0KUN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647270 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.2e-53
Identity = 157/286 (54.90%), Postives = 167/286 (58.39%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVID--------------------DWIWRECW---------- 120
           FVTFREPDAAMRACVDA+PVID                        ++ W          
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 ----LSFSFNTNF----------PSLCYPPRDPLQSL-----------------WSYYNV 180
               LS +F + F          P+  +P     Q +                  SYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXGGSGQQGYGVQYP 225
           YGGATAQYPMYGTGPGGILSGA      XXXXXXXXXXXXXXXXXXX        GVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGA------XXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYP 240

[Close]

BLAST of Carg27049 vs. TrEMBL
Match: tr|A0A1S4E2E8|A0A1S4E2E8_CUCME (RNA-binding protein 24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 149/248 (60.08%), Postives = 158/248 (63.71%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDD----------WIWRE----------------CWLSFS 120
           FVTFREPDAAMRACVDA+PVID            + R                   LS +
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNNFRVLSSN 120

Query: 121 FNTNF----------PSLCYPPRDPLQSL-----------------WSYYNVYGGATAQY 180
           F + F          P+  +P     Q +                  SYYNVYGGATAQY
Sbjct: 121 FQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNVYGGATAQY 180

Query: 181 PMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXGGSGQQGYGVQYPHHLLQYSA 196
           PMYGTGPGGILSGA      XXXXXXXXXXXXXXXXXXX        GVQYPHHL QYSA
Sbjct: 181 PMYGTGPGGILSGA------XXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYPHHLFQYSA 240

[Close]

BLAST of Carg27049 vs. TrEMBL
Match: tr|A0A1S4E2E1|A0A1S4E2E1_CUCME (RNA-binding protein 24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.3e-52
Identity = 149/256 (58.20%), Postives = 159/256 (62.11%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVID--------------------DWIWRECW---------- 120
           FVTFREPDAAMRACVDA+PVID                        ++ W          
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 ----LSFSFNTNF----------PSLCYPPRDPLQSL-----------------WSYYNV 180
               LS +F + F          P+  +P     Q +                  SYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXGGSGQQGYGVQYP 196
           YGGATAQYPMYGTGPGGILSGA      XXXXXXXXXXXXXXXXXXX        GVQYP
Sbjct: 181 YGGATAQYPMYGTGPGGILSGA------XXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYP 240

The following BLAST results are available for this feature:

BLAST of Carg27049 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930184.1	2.8e-65	70.57	RNA-binding protein 24 isoform X6 [Cucurbita moschata] >XP_022974079.1 RNA-bindi...	[more]
XP_022930180.1	1.1e-64	68.97	RNA-binding protein 38 isoform X2 [Cucurbita moschata] >XP_022974075.1 RNA-bindi...	[more]
XP_022930183.1	1.8e-64	67.86	RNA-binding protein 38 isoform X5 [Cucurbita moschata] >XP_022974078.1 RNA-bindi...	[more]
XP_023535743.1	1.8e-64	69.10	RNA-binding protein 38-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022930182.1	2.4e-64	67.59	RNA-binding protein 38 isoform X4 [Cucurbita moschata] >XP_022974077.1 RNA-bindi...	[more]

BLAST of Carg27049 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33470.1	7.0e-34	39.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	7.2e-31	77.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	7.2e-31	84.72	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	1.0e-29	74.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.1	8.8e-29	77.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg27049 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M1S3\|ARP1_ARATH	6.9e-23	60.49	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
sp\|Q62176\|RBM38_MOUSE	2.1e-19	57.50	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
sp\|Q6GQD3\|RB24A_XENLA	2.7e-19	61.97	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
sp\|Q9I8B3\|RB24B_XENLA	2.7e-19	61.97	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
sp\|Q5ZMA3\|RBM24_CHICK	2.7e-19	61.97	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of Carg27049 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E2D8\|A0A1S4E2D8_CUCME	2.1e-53	56.47	RNA-binding protein 24 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
tr\|A0A1S4E2E6\|A0A1S4E2E6_CUCME	6.2e-53	54.90	RNA-binding protein 24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
tr\|A0A0A0KUN6\|A0A0A0KUN6_CUCSA	6.2e-53	54.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647270 PE=4 SV=1	[more]
tr\|A0A1S4E2E8\|A0A1S4E2E8_CUCME	1.8e-52	60.08	RNA-binding protein 24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
tr\|A0A1S4E2E1\|A0A1S4E2E1_CUCME	5.3e-52	58.20	RNA-binding protein 24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27049-RA	Carg27049-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 4.2E-18 score: 76.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..73 e-value: 9.7E-16 score: 57.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..73 score: 15.187
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 2..79 e-value: 3.6E-21 score: 77.4
None	No IPR available	PANTHER	PTHR44374:SF4	SUBFAMILY NOT NAMED	coord: 114..224 coord: 1..83
None	No IPR available	PANTHER	PTHR44374	FAMILY NOT NAMED	coord: 114..224 coord: 1..83
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..82 e-value: 1.06213E-34 score: 119.257
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 7..75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27049	Cla012381	Watermelon (97103) v1	carwmB0028
Carg27049	Csa5G647270	Cucumber (Chinese Long) v2	carcuB0024
Carg27049	MELO3C022120	Melon (DHL92) v3.5.1	carmeB0026
Carg27049	ClCG08G001810	Watermelon (Charleston Gray)	carwcgB0027
Carg27049	CSPI05G30320	Wild cucumber (PI 183967)	carcpiB0025
Carg27049	Cucsa.237790	Cucumber (Gy14) v1	carcgyB0027
Carg27049	CmaCh09G012030	Cucurbita maxima (Rimu)	carcmaB0036
Carg27049	CmoCh09G012050	Cucurbita moschata (Rifu)	carcmoB0036
Carg27049	Lsi08G001800	Bottle gourd (USVL1VR-Ls)	carlsiB023
Carg27049	Cp4.1LG06g09720	Cucurbita pepo (Zucchini)	carcpeB0039
Carg27049	CsGy5G029720	Cucumber (Gy14) v2	carcgybB0024
Carg27049	MELO3C022120.2	Melon (DHL92) v3.6.1	carmedB0027
Carg27049	CsaV3_5G039420	Cucumber (Chinese Long) v3	carcucB0025
Carg27049	Cla97C08G145920	Watermelon (97103) v2	carwmbB0023
Carg27049	Bhi06G000120	Wax gourd	carwgoB0029

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None