Bhi06G000120 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G000120
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	RNA-binding protein
Location	chr6 : 2983010 .. 2988898 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAATTAAAATTTTCCATTTTAATTATTTTTTGGTATGTAAACTTTTGCTTTCCCTTCCCTCCTTCCCTTAGCCATCTCTCATTTCACTTTCTTCCTTTTGTTTTCATCTGTGACCTAATTCTCTATCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTTCTCATCCTATTCCTCATTCCATCTCTCTTGATCTAACCCTTTCAAACACGAAATCTTGACACAAATTTAGGAAATAGTTTGTGGGATTTAAGAATCTGATCTTGCAAAGATTTCTGTTTTTTGTTTTTTTTTGGGTTTCTTTTTAAATTTTGAAGATCATGACTCCTTCTAATTTGGCAAGTCAATTTGGTGATACCACTTATACTAAGGTATTTGTTGGTGGGTTGGCTTGGGAAACTCACAAAGACACTATGAAGAAATACTTTGAACAATTTGGTGATATCTTGGAGGCTGTTGTTATTACTGACAAGGCCACTGGTCGATCCAAAGGCTATGGATTTGTACTCTTCTTTCTTTCCTTCTTATTTCTTTTTCTTTTATTTCCCCTTCTTTCTCGTAACTAAGGGTTTTCCTTTTTTTTCTTTTTTCTTTTTTCTTTTTACAGGTCACGTTTCGAGAACCCGATGCCGCCATGAGAGCTTGCGTTGATGCCGCTCCGGTCATCGATGGCCGACGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCTTCCACGCCTAAACACGGTATATTCTACTACACTTAGATCTACCCATTATTTCATTTGGTAACCATTTGATTCTTATTTTTCTTTTCTTTTCTTTCATAGTAAACAACTCTAAATATTTGCAAATATAGCACAACATACAAAAAAAAAATTACGAATATAAAAAAATTTAGATCCAACTCTGAGAATCAATCACTTATAGACTAGACCATATTCCTATAAGCTATCACTGATAAATTTTACTATATCTTAATTATTATTAACCTAAGTGGATAACAACTAAAAAATGAAATGATTTGATGTTTGGAATTGTGAAACATAAGTTATAAGAATATATATGTAAGTATGGTTGATTTGTTTTTGATGTGTTTAAAATTTGTGTTTTAAAGAGAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGAGGAGGAGGAGTAGGAGGAAGAAATTTTAGGGTATTGAGCTCAAATTTCCAGACTGGTTTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTAATTTTTCTTTTCTTTTCTTTTCTTTTTTCTTTTTTTTTTTTTTAAAAAAAAAAGAAAAATTCTCTATTTAATAATTTTATACTTTTGTTTATTTTTTCTCTCTCTACAACGTGACTTGCCAACTCATTTCTTCACTTTACTTTATGACTAACAATAAAGTCTTTTTTTTTTCCCTTCTTAATCACTCTAAATTATTTCATATTGTTTCCTCTTTAAGTTACTACTCATTTTATTTTCATCTTATTTATGCATTCAATTTACTGCATGCATGCCATTGCATGTATCTATCTACATTCATTAATTGGGTAGTTCAAAATTTTACTTCTTTTTAAATAAAGAAAATTGATAAATATAACAAATTTTCATTATCTATCAAAATCGATCACATTTTGTTGTAGTTGAAAGTATTTTAAGTAGTTTTATTATTTAAAATAATTATCCTAAAAATTTCTTGTTAATTAATTTATTATTCTTGGTGTTTTTTTTAGGTACTCTTCCTATTCGCCCGACTACACTTACCCCACGGTTTGTACAAACTTATCCTTTTATCTTTAAATTAAAAAATAAAATGGAATAGTTATTGGGAAGAAATAAATAAATAAATAATAGTAATAATAAAAGGGTTTTGTTGAAGAAAGATAGTAAAAAAAAATGGGTCACTTTTGAATATAAAAAAATAAATCAAAATATTTACAAAATATAGCAAAAATTTAAAACTATCAATGATCCATGTTGTTAGACACTGATAAATTTCTATCAGTGTCTATCAACGTCTATCATTCATAGTTCTGAAATTTTACTATATTCTATAAATATTTTCAGTAATTTTACCATTTAAAATAATTTTCCTACCCAAATTGTAATATTGGTTTGGGAGTGGAGAATGCTATAATTGGAAGTGAATTGAAATGAAGAATGTGTACATAATTTGTGGTCAAACTGTTGAAAAAGTGAAAGTTAGAGAGAACCAATCTGATGTTCCTTCTCTTGTCGTTTTATCCGACAGTTTTTGTTTCTTCATTTAATATTCTGTAACAGTAAATCACTTTAGTTACATTTTTTTTTTTTTTATTTTATTTTATGGGTCATTGTTACAGTTTTCGTTTTACACGTTCTTTCATGCACATAACCATGAAACTGCCTTCTCCAAGCCCACCATTTCAAATAGAAGAGAAAAATATTTTACATTTATTTTCCCACTAATCTTTGCGTATTTTATTAAATTATTTAATCATAATTTATAACTTGTTTTTTAAAATTTTTTTAGATGTGAATAGTAAAAAATGATGCACAAAAATAGGTAATATTCGAAATGCATTCAAGTATTTCATAATATATATATATATATATTTACCTTGTTTACTTTGTATTGAAATGAGATGCATGTGATTAGGCTGGACGTAATCATTAACTTGTATTGACTTTTATATATATATATATATATTTCTTTGTGATTGCATGGAGTTTGATATAATCTAGACACCACTTATTATTTATTTGAAATTTTGGAGACGTTTGGGGCAAAAATTATTTTAAGAGTATAATAACCACTTAAATATCATTTCAAAACCCTCAATTAACTACATTCAATATTATTTCAGAACCCTCATTTGCTACAACATTTACTATTTGGTACAGTTTTTACTATATTACATGTATCAATTTTTTATTCTTTGCTACAATTTTTATTATTTACTTCTCAAACTAAAATAGTTTACACCTTAAACACATACTATTATGATATAAACGAAAATAATCTACATTCTAAGTACAAAACATTATAACCTAACTATAATAAATTAGGACTATAACAACTAATTCTTTATCCCAAATGTCTCCTTTATATTTTAGTAAAAAAACACACATTAAACGGCTGAATTTTTATTCATGAATATGAAATATTATCAATTATCATGGACATAAGCTTAAAAAAAATGTGAATGAAAATGGGAAGGGTTTATTATTATTTATGTTTTGGGTTTTTCTGGATTAAATTTTCAGAGCTATTACAATGTGTACGGCGGGGCAACTGCACAGTACCCAATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCGGCAGCAGCAGCGGCATTCTACCCTTATTTCCAATTCGGGGAAGGCAGCGGTGGCGGTGGTTCAGGGCAGCACGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCGACGGCGATTAATTCAAGTGCTGCAACAACTTTCTCTCAGCATTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGTTTGTTTACCCGTTTGATAATTATTTGTTTCTATGTATCAACATTTTCGATTGAAAAATAAAAAAAATAAGTAAACATATAAAAATGAATAGAGTTTATTCTTCAAAAACAGAAAATATAAAATAAAGATTTTAGCAAGATTACCATTTTGTTTGCACTCTCTCAATTTCTTTACTTTTTTTTTTTTTTTAATTCTCAAAACTTAACATGCAATTCAGATATCAAAAAATTGATTTTACACTTAGGGTTAATTCTAATTGCTTGGAAGAATGATTAGAAAAAGAATTAGGATACATTTTAAGAAATTAGAAAATAAATGTTAATAGGCTAAGGCTTTCATAAATTTCTAAAAATAACTGACTAAACTTTTCTTTTTCCCTCAACTCGTTAAGTATTATGTCGTATCATCTAACTATTGGTTGTATTTATACATCCAATAACTCAAGAAATCATCTAATAAGTAAATATATTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTAAGTTGGGAAAAATGTGAAAGAAAGACATACTAATATCTTTGACAGTGTTTTTTGCTATTCCACAGGCGTGACCATGGCTCTTCCTGCACCAATCCCACATCGCTAGAGACAACAAATCTCATCATCTTCAAAATTCCTTCAAATTTGTCCCCTCACTCATCACTTAAATTCAACTCAGCCTTCGCCCTAACCATGGTTAAGTCAATCTCTTTCTCTCTAACTCATGCCTTTACAGGCCAATCCGAGCCCTCCATAGGGGCTTCCTCAATCCAACCATACCAAATCTCACCCCTCCAAAATTGGAGCAAAAATCATGCATTTCTATTTTTTTTTTATTAATCATATTAATTAGGGTTTAGAGAAAAAGAAGGGTGAAAGTGGTTCCTTTTATCAAGAGAACCAAAACCCACTTTGTGAAAAAAAAAAAAAAAAAAAAACCAATTTAGGTCATCAAGGGAATTGGCCTTTAAGTTGGTGAAATTTGCACATAACTTTTGTTTTTTAATCTTCAAAGCCTAGGAAAGACTTTAAGGATATAACAAAAATGAAAAACATTTTTCCCAAAAAAAAAAAAAAATCATTGTATATTTTATTCTAAATACCACACCCTCCTTTTTCTCAATTCCATCACTTTGAAAAAATTGGACTGAAAAAAGGGTAATATTTTTCTAATCATCATTGTAATTAAATTTCAATTAGGGAGTAATTAGATGGAGAACTTTTCAAGAAATTGGTGGGGGCAAGGGCTGCCCCTACCTTTGTCTTAAAATAGTAGTAGTTTTTTCAAAGATTAGGACCAATCACCAATCTTTAAATTTTTCCTCTTTAGTTTAGTGGAATTTTTTTTTTTTTACCCAATTAATTTAGTTGACATATTATTTCCCTTTGGTTTGGGGAATAATACTAAATCTCTTTGATTAATTAACCCTTAGCACATTAGTTATTTCTTGTAATTAAAATTTTCACCAACAATCGTGGTTGAACTTATGGGAGTTTACAACCATGTTTATTTTTGGTAAACCAAAGCACAAATATTGCTTTTTGGTTTAACTTTTTTTTTTTTTTGGTGCATTTAGGTTTCATAATTAGAAATTAATTAGGGATTAGGGTTTAAGCATGTCATGATTTTGAGATTCCATTAATGGATATTGGAAGTCTCAAAATAAGCATTTTGCATGTTAGCCCTTGGGAGATATTTGGGTTCCCTTTGGCTTCTTCTTTCACACTAACCCTACCAACCAACCAACCAACCAACCATGGTTAGGACTTAGGTCAACTTCATTTCTCTCTTTCTTCACCATGTTGCCTTTTCATAATTTCTTCACTATTCCCATTTTACCCTCTTTCATGTCATCCCCAATCATCTTCCTTTGGCTGTCTTCTTCTTCTTCTTCTCTTCTTCATGTGTCTGTGTGTTCAAGTTAGCACTTTCTCTTCATGGAGTAGGTGGGACCTTGGAAACACTTTTTCTTTTTTTTTTTTTTTTTTTAATTTTTTCTTTAAAAAAAGGGCCTTTTTCCTTTTTTTTTTTTTTTTTTCTTAATGTCTTTTCATGGTTTGTAATGTAATTAGATGCTTTAATTACTATCCTTTCTTTTATGTCAGGACTTCTACTAAGATTCAGTTCTTCATCAGCTGCTCCTTTGCAGCTGCTTGAAGAATAACCTATGTACCTCAATATTAATTGCTTCTTTCTTTCTGCTCTCTCTATTCTCTTCTTTTTATTGAACTGATGAGTTGGTCTTTTTGAGCATTA

mRNA sequence

TTTAATTAAAATTTTCCATTTTAATTATTTTTTGGTATGTAAACTTTTGCTTTCCCTTCCCTCCTTCCCTTAGCCATCTCTCATTTCACTTTCTTCCTTTTGTTTTCATCTGTGACCTAATTCTCTATCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTTCTCATCCTATTCCTCATTCCATCTCTCTTGATCTAACCCTTTCAAACACGAAATCTTGACACAAATTTAGGAAATAGTTTGTGGGATTTAAGAATCTGATCTTGCAAAGATTTCTGTTTTTTGTTTTTTTTTGGGTTTCTTTTTAAATTTTGAAGATCATGACTCCTTCTAATTTGGCAAGTCAATTTGGTGATACCACTTATACTAAGGTATTTGTTGGTGGGTTGGCTTGGGAAACTCACAAAGACACTATGAAGAAATACTTTGAACAATTTGGTGATATCTTGGAGGCTGTTGTTATTACTGACAAGGCCACTGGTCGATCCAAAGGCTATGGATTTGTCACGTTTCGAGAACCCGATGCCGCCATGAGAGCTTGCGTTGATGCCGCTCCGGTCATCGATGGCCGACGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCTTCCACGCCTAAACACGGAGGAGGAGGAGGAGGAGGAGGAGTAGGAGGAAGAAATTTTAGGGTATTGAGCTCAAATTTCCAGACTGGTTTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCCACGAGCTATTACAATGTGTACGGCGGGGCAACTGCACAGTACCCAATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCGGCAGCAGCAGCGGCATTCTACCCTTATTTCCAATTCGGGGAAGGCAGCGGTGGCGGTGGTTCAGGGCAGCACGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCGACGGCGATTAATTCAAGTGCTGCAACAACTTTCTCTCAGCATTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGCGTGACCATGGCTCTTCCTGCACCAATCCCACATCGCTAGAGACAACAAATCTCATCATCTTCAAAATTCCTTCAAATTTGTCCCCTCACTCATCACTTAAATTCAACTCAGCCTTCGCCCTAACCATGGTTAAGTCAATCTCTTTCTCTCTAACTCATGCCTTTACAGGCCAATCCGAGCCCTCCATAGGGGCTTCCTCAATCCAACCATACCAAATCTCACCCCTCCAAAATTGGAGCAAAAATCATGCATTTCTATTTTTTTTTTATTAATCATATTAATTAGGGTTTAGAGAAAAAGAAGGGTGAAAGTGGTTCCTTTTATCAAGAGAACCAAAACCCACTTTGTGAAAAAAAAAAAAAAAAAAAAACCAATTTAGGTCATCAAGGGAATTGGCCTTTAAGTTGGTGAAATTTGCACATAACTTTTGTTTTTTAATCTTCAAAGCCTAGGAAAGACTTTAAGGATATAACAAAAATGAAAAACATTTTTCCCAAAAAAAAAAAAAAATCATTGTATATTTTATTCTAAATACCACACCCTCCTTTTTCTCAATTCCATCACTTTGAAAAAATTGGACTGAAAAAAGGGTAATATTTTTCTAATCATCATTGTAATTAAATTTCAATTAGGGAGTAATTAGATGGAGAACTTTTCAAGAAATTGGTGGGGGCAAGGGCTGCCCCTACCTTTGTCTTAAAATAGTAGTAGTTTTTTCAAAGATTAGGACCAATCACCAATCTTTAAATTTTTCCTCTTTAGTTTAGTGGAATTTTTTTTTTTTTACCCAATTAATTTAGTTGACATATTATTTCCCTTTGGTTTGGGGAATAATACTAAATCTCTTTGATTAATTAACCCTTAGCACATTAGTTATTTCTTGTAATTAAAATTTTCACCAACAATCGTGGTTGAACTTATGGGAGTTTACAACCATGTTTATTTTTGGTAAACCAAAGCACAAATATTGCTTTTTGGTTTAACTTTTTTTTTTTTTTGGTGCATTTAGGTTTCATAATTAGAAATTAATTAGGGATTAGGGTTTAAGCATGTCATGATTTTGAGATTCCATTAATGGATATTGGAAGTCTCAAAATAAGCATTTTGCATGTTAGCCCTTGGGAGATATTTGGGTTCCCTTTGGCTTCTTCTTTCACACTAACCCTACCAACCAACCAACCAACCAACCATGGTTAGGACTTAGGTCAACTTCATTTCTCTCTTTCTTCACCATGTTGCCTTTTCATAATTTCTTCACTATTCCCATTTTACCCTCTTTCATGTCATCCCCAATCATCTTCCTTTGGCTGTCTTCTTCTTCTTCTTCTCTTCTTCATGTGTCTGTGTGTTCAAGTTAGCACTTTCTCTTCATGGAGTAGGTGGGACCTTGGAAACACTTTTTCTTTTTTTTTTTTTTTTTTTAATTTTTTCTTTAAAAAAAGGGCCTTTTTCCTTTTTTTTTTTTTTTTTTCTTAATGTCTTTTCATGGTTTGTAATGTAATTAGATGCTTTAATTACTATCCTTTCTTTTATGTCAGGACTTCTACTAAGATTCAGTTCTTCATCAGCTGCTCCTTTGCAGCTGCTTGAAGAATAACCTATGTACCTCAATATTAATTGCTTCTTTCTTTCTGCTCTCTCTATTCTCTTCTTTTTATTGAACTGATGAGTTGGTCTTTTTGAGCATTA

Coding sequence (CDS)

ATGACTCCTTCTAATTTGGCAAGTCAATTTGGTGATACCACTTATACTAAGGTATTTGTTGGTGGGTTGGCTTGGGAAACTCACAAAGACACTATGAAGAAATACTTTGAACAATTTGGTGATATCTTGGAGGCTGTTGTTATTACTGACAAGGCCACTGGTCGATCCAAAGGCTATGGATTTGTCACGTTTCGAGAACCCGATGCCGCCATGAGAGCTTGCGTTGATGCCGCTCCGGTCATCGATGGCCGACGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCTTCCACGCCTAAACACGGAGGAGGAGGAGGAGGAGGAGGAGTAGGAGGAAGAAATTTTAGGGTATTGAGCTCAAATTTCCAGACTGGTTTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCCACGAGCTATTACAATGTGTACGGCGGGGCAACTGCACAGTACCCAATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCGGCAGCAGCAGCGGCATTCTACCCTTATTTCCAATTCGGGGAAGGCAGCGGTGGCGGTGGTTCAGGGCAGCACGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCGACGGCGATTAATTCAAGTGCTGCAACAACTTTCTCTCAGCATTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGCGTGACCATGGCTCTTCCTGCACCAATCCCACATCGCTAG

Protein sequence

MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGGGGVGGRNFRVLSSNFQTGFGGNVGSAFHSPTTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQHGYGVQYPHHLFQYSTAINSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR

Homology

[Close]

BLAST of Bhi06G000120 vs. Swiss-Prot
Match: sp|Q9M1S3|ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.6e-31
Identity = 64/101 (63.37%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 2   TPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGF 61
           T +N+   FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 62  VTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPST 103
           VTF++  AA RAC D+ P+I+GRRANCNLASLG +  K  T
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPT 103

[Close]

BLAST of Bhi06G000120 vs. Swiss-Prot
Match: sp|Q6GQD3|RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
          DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Bhi06G000120 vs. Swiss-Prot
Match: sp|Q9I8B3|RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
          DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Bhi06G000120 vs. Swiss-Prot
Match: sp|Q5ZMA3|RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
          DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Bhi06G000120 vs. Swiss-Prot
Match: sp|Q6P8A7|RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
          DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Bhi06G000120 vs. TAIR10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 206.1 bits (523), Expect = 2.9e-53
Identity = 132/266 (49.62%), Postives = 161/266 (60.53%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKXXXXXXXXXXXXRNFRVLSSNFQTGFG 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P             R  +V +S F+T F 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSP------IHGHVGGRGMKV-TSPFKTHF- 122

Query: 132 GNVGSAFHSPTTFPHYAIHQGIPY-NLYGYSSYSPDYTYPT-SYYNVYGGATAQYPMYGT 191
           G   +A  SP  F HY     +PY N         DY YPT SYYNVYGGATAQ+PMYG+
Sbjct: 123 GTAATAIPSPLPFSHYT----LPYTNXXXXXXXXXDYNYPTQSYYNVYGGATAQHPMYGS 182

Query: 192 GPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHHLFQYSTAINSSAATTFS 251
           GP   ++ A                            + YP+H+F Y      SA     
Sbjct: 183 GPMTGVAAA-----PAAGFYPYLQFAEGNGPVTGYAPLHYPNHMFHY------SAPGGNY 242

Query: 252 QHYAAPPMSLPPTPPTLPSGVTMALP 276
            H+   P+SL P+ P +PS V  A+P
Sbjct: 243 PHHNGSPVSLAPS-PVIPS-VCFAVP 243

[Close]

BLAST of Bhi06G000120 vs. TAIR10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 185.3 bits (469), Expect = 5.3e-47
Identity = 92/121 (76.03%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKXXXXXXXXXXXXRNFRVLSSNFQTGF 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP              N RV+ S  QTGF
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPN-----HGGGGRINNMRVMMSTMQTGF 123

Query: 131 G 132
           G
Sbjct: 128 G 123

[Close]

BLAST of Bhi06G000120 vs. TAIR10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 157.9 bits (398), Expect = 9.0e-39
Identity = 97/195 (49.74%), Postives = 119/195 (61.03%), Query Frame = 0


Query: 6   LASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFR 65
           L S FGDTT+TKVFVGGLAWET  +T++++FEQ+G+ILEAVVI DK TGRSKGYGFVTFR
Sbjct: 14  LNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFR 73

Query: 66  EPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKXXXXXXXXXXXXRNFRVLSSN 125
           +P+AA RAC D  P+IDGRRANCNLASLG    +P  P             R       N
Sbjct: 74  DPEAARRACADPTPIIDGRRANCNLASLG----RPRPPLPYAVIPNMPGRLRPASPYIGN 133

Query: 126 FQTGFGGNVGS-AFHSPTTFPHYAIHQGIPYNLYGYSSYSPDYTYPTS--YYNVYGGATA 185
            Q   G  +G+  +  P     Y   QG+ Y  YG ++Y P+Y Y  S   Y+ Y G   
Sbjct: 134 VQGPRGSLIGNYPYQQPLP---YNYQQGVVYP-YGVTAYGPEYMYSQSQGLYSPYMG--Q 193

Query: 186 QY-PMYGTGPGGILS 197
           QY  +YG  PG + S
Sbjct: 194 QYLQVYGV-PGAVNS 197

[Close]

BLAST of Bhi06G000120 vs. TAIR10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-38
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 6   LASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFR 65
           L S FGDTT+TKVFVGGLAWET  +T++++F+Q+GDILEAVVITDK TGRSKGYGFVTFR
Sbjct: 14  LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFR 73

Query: 66  EPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKXXXXXXXXXXXXRNFRVLSSN 125
           +P+AA RACVD  P+IDGRRANCNLASLG  RS+P  P             R       +
Sbjct: 74  DPEAARRACVDPTPIIDGRRANCNLASLG--RSRP--PMQYAVIPHAPGRVRPPSPYVGS 133

Query: 126 FQTGFGGNVGS-AFHSPTTFPHYAIHQGIPY 156
            Q+  G + GS  +H P   P Y   QG+ Y
Sbjct: 134 VQSPRGLHFGSHPYHQP---PTYNYQQGVVY 157

[Close]

BLAST of Bhi06G000120 vs. TAIR10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 149.1 bits (375), Expect = 4.2e-36
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 8   SQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREP 67
           S FGDTT+TKVFVGGLAWET  D M++YF+QFG+ILEAV+ITDKATG+SKGYGFVTFR+ 
Sbjct: 9   SPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDS 68

Query: 68  DAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK 105
           D+A RA  D  PVIDGR+ANCN+AS G  R +PSTP+
Sbjct: 69  DSATRAVADPNPVIDGRKANCNIASFG--RPRPSTPR 103

[Close]

BLAST of Bhi06G000120 vs. TrEMBL
Match: tr|A0A1S4E2E8|A0A1S4E2E8_CUCME (RNA-binding protein 24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 1.3e-124
Identity = 261/282 (92.55%), Postives = 264/282 (93.62%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKXXXXXXXXXXXXRNFR 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPK             NFR
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPK-----HGGGGGRNNFR 120

Query: 121 VLSSNFQTGFGGNVGSAFHSP-TTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           VLSSNFQ+GFGGNVGSAFHSP TTFPHYAI QGIPYNLYGYSSYSPDYTYPTSYYNVYGG
Sbjct: 121 VLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180

Query: 181 ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHHLFQYSTA 240
           ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXX VQYPHHLFQYS A
Sbjct: 181 ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYPHHLFQYSAA 240

Query: 241 INSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 282
           INS+AATTF QHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 INSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 277

[Close]

BLAST of Bhi06G000120 vs. TrEMBL
Match: tr|A0A1S4E2E1|A0A1S4E2E1_CUCME (RNA-binding protein 24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 2.9e-124
Identity = 261/285 (91.58%), Postives = 264/285 (92.63%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP---KXXXXXXXXXXXXR 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP   K             
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQTGFGGNVGSAFHSP-TTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQ+GFGGNVGSAFHSP TTFPHYAI QGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXX VQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYPHHLFQY 240

Query: 241 STAINSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 282
           S AINS+AATTF QHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285

[Close]

BLAST of Bhi06G000120 vs. TrEMBL
Match: tr|A0A1S4E2D8|A0A1S4E2D8_CUCME (RNA-binding protein 24 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 4.5e-117
Identity = 251/276 (90.94%), Postives = 255/276 (92.39%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKXXXXXXXXXXXXRNFR 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPK             NFR
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPK-----HGGGGGRNNFR 120

Query: 121 VLSSNFQTGFGGNVGSAFHSP-TTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           VLSSNFQ+GFGGNVGSAFHSP TTFPHYAI QGIPYNLYGYSSYSPDYTYPTSYYNVYGG
Sbjct: 121 VLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180

Query: 181 ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHHLFQYSTA 240
           ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXX VQYPHHLFQYS A
Sbjct: 181 ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYPHHLFQYSAA 240

Query: 241 INSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALP 276
           INS+AATTF QHYAAPPMSLPPTPPTLPS V  A+P
Sbjct: 241 INSTAATTFPQHYAAPPMSLPPTPPTLPS-VFFAIP 270

[Close]

BLAST of Bhi06G000120 vs. TrEMBL
Match: tr|A0A1S4E2E6|A0A1S4E2E6_CUCME (RNA-binding protein 24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.0e-116
Identity = 251/279 (89.96%), Postives = 255/279 (91.40%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP---KXXXXXXXXXXXXR 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP   K             
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQTGFGGNVGSAFHSP-TTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQ+GFGGNVGSAFHSP TTFPHYAI QGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXX VQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYPHHLFQY 240

Query: 241 STAINSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALP 276
           S AINS+AATTF QHYAAPPMSLPPTPPTLPS V  A+P
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPS-VFFAIP 278

[Close]

BLAST of Bhi06G000120 vs. TrEMBL
Match: tr|A0A0A0KUN6|A0A0A0KUN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647270 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.0e-116
Identity = 251/279 (89.96%), Postives = 255/279 (91.40%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP---KXXXXXXXXXXXXR 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP   K             
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQTGFGGNVGSAFHSP-TTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQ+GFGGNVGSAFHSP TTFPHYAI QGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXX VQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYPHHLFQY 240

Query: 241 STAINSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALP 276
           S AINS+AATTF QHYAAPPMSLPPTPPTLPS V  A+P
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPS-VFFAIP 278

[Close]

BLAST of Bhi06G000120 vs. NCBI nr
Match: XP_016902398.1 (PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo])

HSP 1 Score: 454.9 bits (1169), Expect = 2.0e-124
Identity = 261/282 (92.55%), Postives = 264/282 (93.62%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKXXXXXXXXXXXXRNFR 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPK             NFR
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPK-----HGGGGGRNNFR 120

Query: 121 VLSSNFQTGFGGNVGSAFHSP-TTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           VLSSNFQ+GFGGNVGSAFHSP TTFPHYAI QGIPYNLYGYSSYSPDYTYPTSYYNVYGG
Sbjct: 121 VLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180

Query: 181 ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHHLFQYSTA 240
           ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXX VQYPHHLFQYS A
Sbjct: 181 ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYPHHLFQYSAA 240

Query: 241 INSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 282
           INS+AATTF QHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 INSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 277

[Close]

BLAST of Bhi06G000120 vs. NCBI nr
Match: XP_011656046.1 (PREDICTED: RNA-binding protein 24 [Cucumis sativus] >XP_016902396.1 PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo])

HSP 1 Score: 453.8 bits (1166), Expect = 4.4e-124
Identity = 261/285 (91.58%), Postives = 264/285 (92.63%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP---KXXXXXXXXXXXXR 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP   K             
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQTGFGGNVGSAFHSP-TTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQ+GFGGNVGSAFHSP TTFPHYAI QGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXX VQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYPHHLFQY 240

Query: 241 STAINSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 282
           S AINS+AATTF QHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285

[Close]

BLAST of Bhi06G000120 vs. NCBI nr
Match: XP_023535742.1 (RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 432.2 bits (1110), Expect = 1.4e-117
Identity = 244/287 (85.02%), Postives = 247/287 (86.06%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKXXXXXXXXXXXXRNFR 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK            RNFR
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGRNFR 120

Query: 121 VLSSNFQTGFGGNVGSAFHSPTTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNVYGGA 180
           VLSS FQTGFGGNVGSAFHS  TFPHYAIHQGIPYNLYGYSSYSPDY YPTSYYNVYGGA
Sbjct: 121 VLSS-FQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180

Query: 181 TAQYPMYGTGPGGILSGA------XXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHHLF 240
           TAQYPMYGTGPGGILSGA      XXXXXXXXXXXXXXXXXX          VQYPHHL 
Sbjct: 181 TAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXTGGSGQQGYGVQYPHHLL 240

Query: 241 QYSTAINSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 282
           QYS A+NS+  TTF QHYAAPPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 QYSAALNST-PTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 285

[Close]

BLAST of Bhi06G000120 vs. NCBI nr
Match: XP_022157232.1 (RNA-binding protein 24 isoform X3 [Momordica charantia])

HSP 1 Score: 430.6 bits (1106), Expect = 4.0e-117
Identity = 247/289 (85.47%), Postives = 255/289 (88.24%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+NLA+QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLATQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKXXXXXXXXXXXXRNFR 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK            RNFR
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK------HGGGGGRNFR 120

Query: 121 VLSSNFQTGFGGNVGSAFHSPTTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNVYGGA 180
           VLSS FQ+GFGGNVGSAFHS  TFPHYA+ QGIPYNLYGYSSYSPDYTYPTSYYNVYGGA
Sbjct: 121 VLSS-FQSGFGGNVGSAFHSAATFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGGA 180

Query: 181 TAQYPMYGTGPGGILSGA--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHH 240
           TAQYPMYGTGPGGI++GA        XXXXXXXXXXXXXXXXXXXXX       VQYPHH
Sbjct: 181 TAQYPMYGTGPGGIMNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQQGGYGVQYPHH 240

Query: 241 LFQYSTAINSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 282
           LFQYS AINSS AT+F QHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 LFQYSAAINSS-ATSFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 281

[Close]

BLAST of Bhi06G000120 vs. NCBI nr
Match: XP_016902399.1 (PREDICTED: RNA-binding protein 24 isoform X4 [Cucumis melo])

HSP 1 Score: 429.9 bits (1104), Expect = 6.8e-117
Identity = 251/276 (90.94%), Postives = 255/276 (92.39%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKXXXXXXXXXXXXRNFR 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPK             NFR
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPK-----HGGGGGRNNFR 120

Query: 121 VLSSNFQTGFGGNVGSAFHSP-TTFPHYAIHQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           VLSSNFQ+GFGGNVGSAFHSP TTFPHYAI QGIPYNLYGYSSYSPDYTYPTSYYNVYGG
Sbjct: 121 VLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180

Query: 181 ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQYPHHLFQYSTA 240
           ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXX VQYPHHLFQYS A
Sbjct: 181 ATAQYPMYGTGPGGILSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQYPHHLFQYSAA 240

Query: 241 INSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALP 276
           INS+AATTF QHYAAPPMSLPPTPPTLPS V  A+P
Sbjct: 241 INSTAATTFPQHYAAPPMSLPPTPPTLPS-VFFAIP 270

The following BLAST results are available for this feature:

BLAST of Bhi06G000120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M1S3\|ARP1_ARATH	6.6e-31	63.37	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
sp\|Q6GQD3\|RB24A_XENLA	1.6e-24	63.53	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
sp\|Q9I8B3\|RB24B_XENLA	1.6e-24	63.53	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
sp\|Q5ZMA3\|RBM24_CHICK	1.6e-24	63.53	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]
sp\|Q6P8A7\|RBM24_XENTR	1.6e-24	63.53	RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1	[more]

BLAST of Bhi06G000120 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33470.1	2.9e-53	49.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	5.3e-47	76.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	9.0e-39	49.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	2.0e-38	56.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	4.2e-36	72.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Bhi06G000120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E2E8\|A0A1S4E2E8_CUCME	1.3e-124	92.55	RNA-binding protein 24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
tr\|A0A1S4E2E1\|A0A1S4E2E1_CUCME	2.9e-124	91.58	RNA-binding protein 24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
tr\|A0A1S4E2D8\|A0A1S4E2D8_CUCME	4.5e-117	90.94	RNA-binding protein 24 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
tr\|A0A1S4E2E6\|A0A1S4E2E6_CUCME	1.0e-116	89.96	RNA-binding protein 24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
tr\|A0A0A0KUN6\|A0A0A0KUN6_CUCSA	1.0e-116	89.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647270 PE=4 SV=1	[more]

BLAST of Bhi06G000120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902398.1	2.0e-124	92.55	PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo]	[more]
XP_011656046.1	4.4e-124	91.58	PREDICTED: RNA-binding protein 24 [Cucumis sativus] >XP_016902396.1 PREDICTED: R...	[more]
XP_023535742.1	1.4e-117	85.02	RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022157232.1	4.0e-117	85.47	RNA-binding protein 24 isoform X3 [Momordica charantia]	[more]
XP_016902399.1	6.8e-117	90.94	PREDICTED: RNA-binding protein 24 isoform X4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000120	Bhi06M000120	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 1.2E-21 score: 88.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..73 e-value: 1.6E-15 score: 56.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..100 score: 16.551
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 9..122 e-value: 9.6E-24 score: 86.0
None	No IPR available	PANTHER	PTHR44374:SF4	SUBFAMILY NOT NAMED	coord: 1..274
None	No IPR available	PANTHER	PTHR44374	FAMILY NOT NAMED	coord: 1..274
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 3.74258E-40 score: 135.05
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 7..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi06G000120	Csa5G647270	Cucumber (Chinese Long) v2	cuwgoB461
Bhi06G000120	MELO3C022120	Melon (DHL92) v3.5.1	mewgoB029
Bhi06G000120	ClCG08G001810	Watermelon (Charleston Gray)	wcgwgoB608
Bhi06G000120	CSPI05G30320	Wild cucumber (PI 183967)	cpiwgoB465
Bhi06G000120	Cucsa.237790	Cucumber (Gy14) v1	cgywgoB471
Bhi06G000120	CmaCh01G008830	Cucurbita maxima (Rimu)	cmawgoB0556
Bhi06G000120	CmaCh09G012030	Cucurbita maxima (Rimu)	cmawgoB0011
Bhi06G000120	CmoCh01G009270	Cucurbita moschata (Rifu)	cmowgoB0553
Bhi06G000120	CmoCh09G012050	Cucurbita moschata (Rifu)	cmowgoB0002
Bhi06G000120	Lsi08G001800	Bottle gourd (USVL1VR-Ls)	lsiwgoB586
Bhi06G000120	Cp4.1LG02g09740	Cucurbita pepo (Zucchini)	cpewgoB0671
Bhi06G000120	Cp4.1LG06g09720	Cucurbita pepo (Zucchini)	cpewgoB0974
Bhi06G000120	CsGy5G029720	Cucumber (Gy14) v2	cgybwgoB439
Bhi06G000120	MELO3C022120.2	Melon (DHL92) v3.6.1	medwgoB027
Bhi06G000120	Carg27049	Silver-seed gourd	carwgoB0029
Bhi06G000120	CsaV3_5G039420	Cucumber (Chinese Long) v3	cucwgoB474
Bhi06G000120	Cla012381	Watermelon (97103) v1	wgowmB124
Bhi06G000120	Cla97C08G145920	Watermelon (97103) v2	wgowmbB147

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None