Cla012381 (gene) Watermelon (97103) v1

Overview
NameCla012381
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRNA-binding protein 68390-68829 (AHRD V1 *--* Q9C805_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1
LocationChr8 : 2568005 .. 2570486 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCCATCTAACTTGGCAAGTCAGTTTGGGGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCACAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTAATCTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTGTTTCATTCTTCTCGTATCGAGGGTTTTCTTTTGTTTTGTAGGTCACGTTCCGAGAACCCGATGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGAAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACGCCTAAGCACGGTATATTCACATTTTTCTATACTCAGATCTAGTTGGGTAAACATTTTGATTTTTACTCTTTTTAAAAAGCCAAATCAAATGGTTATTAGATAGATAGAGTGTGGTTGGATATAATTATTTGATGTTTGGATTTATGAAACATAAAGCTGTAAGATTATTGTGTAATTGTGTTTGATTTGTTTTAAAATTTGTGTTTTAAAGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTAAATGTTTCTTTTCATTTTTATTTTTATTTTTATTTTCTTTTTTAAATTCTGATCTAATAATGTTATATTTATTTTTCTCTCTTTTCTCTCTCTACAACGTGACTTGCCAACTCATATCTTCACTTTACTTTATGACTAACAATAAACCCTTTTTTTTCCCTTCTTAATCACTCCAAATTAATTGATGTTGTTTCCTCTTTAAGTTACTACAAACTTACTTTCATCTTATGCATTCAATTACCCCTTCCTTTGTTTTACTGCATGCATGGCATTGCATGTATTTTTTTAAAAAAAATTATCTATCTACATTAATTAATTGGGTAGTTAACAATTTCTTGTTAATTAATTTATTATTCTTGCTGTTTTTTTAGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGGTTTGTACAATCTTTTTCTAGTTCTACAAATCATTTCAGTATCTTTTACCTTTAATTTCATAAATGAAATGGAATAATTATTGAAAAAAATGTATATACTAATAAAAGGGTTTTAAGAAACATAGTACTCTTGGACTACGCACATTTTTGTACAGCTTACTTACTTACAAATTGTCATATAACAAATTTTTATTTTTTATAATGAAAATGAATGTGGCCTAACTTCATTTAAATATTACTCTTTTTAATATTCCTGATGTGGAGAAGACTATAATGAAAGTGAATTGAAATAAAAGAATCTGTAAATTGTCTGGTCAAACTGTTGAAAAGTGAAAGTTGAGAGAACCAATCTGATGTTCCTTCTCTTGTCGTTTTATCCGACAATTTTTGTTTCCACATTTAATATTTTGTAACAGTATATCACTTTGTTACAGTTGTTTTTTCTTTTTTTCTTTTTTTAATGAGTTATTGTTACAGTTTTCGTTACACGTTCTTTCATGCACATAATCATGGAACTGCCGACTCCAAGCCGACCAGACTTTAGAGTGGAAAATATTTGATAGATCACATTCAAACATCTCACTTAATTAAATGTTTAATCACAAGTTATTATGAATATGTTTTTTTAAGAAAGCATATTTTTTTATAAATATTTTGCTAAAAAGAAACACTACGCTACTGAGTTTTGATTCAAGAATATGAAATATTATCAATTATCATGGACATAGGCTTAAAGAAATGTAAATGAAAATGGTAGTGTTTATTATTATTATTTACGTTTGGGGTATTGAATTAAATATTCAGAGCTATTACAATGTTTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTCCAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAACGACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGTTTGTTTGTTGCTCATTCCTTTTTTCTCTCTCTTTTTTTTTTTTTTTTTCAGATTAAAAAATTATGTTCATGTTCTTGTTTCAATTTTATTAAATTAAACATGCAGTCTAGATCAATTATATTAATCAAAAACATGTTTTATTTACATTTCTTTTTAAAAAAAAACATATATATAGTTAAGAAAACATATAAACATGTGGAGTAA

mRNA sequence

ATGACTCCATCTAACTTGGCAAGTCAGTTTGGGGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCACAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTCACGTTCCGAGAACCCGATGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGAAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACGCCTAAGCACGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAGCTATTACAATGTTTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTCCAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAACGACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGTTTGTTTGTTGCTCATTCCTTTTTTCTCTCTCTTTTTTTTTTTTTTTTTCAGATTAAAAAATTATGTTCATGTTCTTGTTTCAATTTTATTAAATTAAACATGCAGTCTAGATCAATTATATTAATCAAAAACATGTTTTATTTACATTTCTTTTTAAAAAAAAACATATATATAGTTAAGAAAACATATAAACATGTGGAGTAA

Coding sequence (CDS)

ATGACTCCATCTAACTTGGCAAGTCAGTTTGGGGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCACAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTCACGTTCCGAGAACCCGATGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGAAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACGCCTAAGCACGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAGCTATTACAATGTTTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTCCAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAACGACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGTTTGTTTGTTGCTCATTCCTTTTTTCTCTCTCTTTTTTTTTTTTTTTTTCAGATTAAAAAATTATGTTCATGTTCTTGTTTCAATTTTATTAAATTAAACATGCAGTCTAGATCAATTATATTAATCAAAAACATGTTTTATTTACATTTCTTTTTAAAAAAAAACATATATATAGTTAAGAAAACATATAAACATGTGGAGTAA

Protein sequence

MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGLFVAHSFFLSLFFFFFQIKKLCSCSCFNFIKLNMQSRSIILIKNMFYLHFFLKKNIYIVKKTYKHVE
Homology
[Close]
BLAST of Cla012381 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.5e-32
Identity = 103/274 (37.59%), Postives = 134/274 (48.91%), Query Frame = 1 

Query: 2   TPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGF 61
           T +N+   FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 62  VTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGR 121
           VTF++  AA RAC D+ P+I+GRRANCNLASLG +  K  T    ++      G   G R
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQ------GPKNGNR 122

Query: 122 NFRVLSSFQTGFGGNVG--SAFHSPTTFPHYAIQ----QGIPYNVYGYSSYSPDYTYPTS 181
                         +VG  S ++ P+ F +   Q    Q +P+  YGY S    Y  P  
Sbjct: 123 ----------ATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPF--YGYPS---AYVAPNM 182

Query: 182 YYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEG--SGGGGSGQQGYGVQYP 241
            +N   G      M G          +     +Y +  +G G    G  S    +   YP
Sbjct: 183 TFNQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYP 242

Query: 242 HHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPP 268
           +H  Q         A  FPQ   + P+S   TPP
Sbjct: 243 YHQSQ---------AIGFPQPSFSKPLSF-STPP 245

[Close]
BLAST of Cla012381 vs. Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.2e-25
Identity = 93/246 (37.80%), Postives = 114/246 (46.34%), Query Frame = 1 

Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQT 131
           RAC D  P+IDGR+AN NLA LG            K +    G   G  +    L     
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-----------KPRIMQPGFAFGVQQIHPALIQRPF 126

Query: 132 GFGGN--VGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATAQYP 191
           G   +     AF  P    PH  +QQ         +S SP   Y ++ Y       AQY 
Sbjct: 127 GIPAHYVYPHAFVQPGVVIPH--VQQA------AAASTSPYIDYTSAAY-------AQY- 186

Query: 192 MYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAA 251
                     S AAAAAAA+  Y      +  G     GYG   P  L   +    + AA
Sbjct: 187 ----------SAAAAAAAAYDQYPYAASPATTGYVTTAGYGYAVPQPLTAAAPGTAAAAA 215

Query: 252 TTFPQH 255
             F Q+
Sbjct: 247 AAFGQY 215

[Close]
BLAST of Cla012381 vs. Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.9e-25
Identity = 94/242 (38.84%), Postives = 114/242 (47.11%), Query Frame = 1 

Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++KYFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQT 131
           RAC D  P+IDGR+AN NLA LG            K +    G   G  +    L     
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-----------KPRIMQPGFAFGVQQLHPALIQRPF 126

Query: 132 GFGGN--VGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATAQYP 191
           G   +     AF  P    PH       P      ++   DYT         G A AQY 
Sbjct: 127 GIPAHYVYPQAFVQPGVVIPHVQ-----PTAAAASTTPYIDYT---------GAAYAQY- 186

Query: 192 MYGTGPGGILSGAAAAAAAF--YPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINST 249
                     + AAAAAAA+  YPY      +G   +G  GY VQ P      +AA   T
Sbjct: 187 -------SAAAAAAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQP-----ITAAAPGT 210

[Close]
BLAST of Cla012381 vs. Swiss-Prot
Match: RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.4e-25
Identity = 94/242 (38.84%), Postives = 113/242 (46.69%), Query Frame = 1 

Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRNFRVLSSFQT 131
           RAC D  P+IDGR+AN NLA LG            K +    G   G  +    L     
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-----------KPRIMQPGFAFGVQQLHPALIQRPF 126

Query: 132 GFGGN--VGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATAQYP 191
           G   +     AF  P    PH       P      ++   DYT         G A AQY 
Sbjct: 127 GIPAHYVYPQAFVQPGVVIPHVQ-----PTAAAASTTPYIDYT---------GAAYAQY- 186

Query: 192 MYGTGPGGILSGAAAAAAAF--YPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINST 249
                     + AAAAAAA+  YPY      +G   +G   Y VQ P      +AA   T
Sbjct: 187 -------SAAAAAAAAAAAYDQYPYAASPAAAGYVTTGGYSYAVQQP-----ITAAAPGT 210

[Close]
BLAST of Cla012381 vs. Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 8.4e-25
Identity = 101/268 (37.69%), Postives = 122/268 (45.52%), Query Frame = 1 

Query: 3   PSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFV 62
           PS +     DTT+TK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFV
Sbjct: 19  PSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78

Query: 63  TFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGRN 122
           T  +  AA RAC D  P+IDGR+AN NLA LG   +KP                      
Sbjct: 79  TMADRAAADRACKDPNPIIDGRKANVNLAYLG---AKP---------------------- 138

Query: 123 FRVLSSFQTGFGGNVGSAFHSPTTF-------PHYAIQQGIPY-NVYGYSSYSPDYTYPT 182
                S QTGF   VG     PT         PHY     I   +V   ++  P  + P 
Sbjct: 139 ----RSLQTGFA--VGVQQLHPTLIQRTYGLTPHYIYPPAIVQPSVVIPATPVPSLSSPY 198

Query: 183 SYYNVYGGATAQYP--MYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQY 242
             Y     A AQYP   Y   P    + + AAA +F  Y               GY    
Sbjct: 199 LEYTPASPAYAQYPPATYDQYP---YAASPAAATSFVGY---------------GYPAAV 231

Query: 243 PHHLFQYSAAINSTAATTFPQHYAAPPM 261
           P  L   SAA  + A TTF Q Y AP +
Sbjct: 259 PQAL---SAA--APAGTTFVQ-YQAPQL 231

[Close]
BLAST of Cla012381 vs. TrEMBL
Match: A0A0A0KUN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647270 PE=4 SV=1)

HSP 1 Score: 547.7 bits (1410), Expect = 9.7e-153
Identity = 266/276 (96.38%), Postives = 269/276 (97.46%), Query Frame = 1 

Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT GGGGG 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT-GGGGGR 120

Query: 121 RNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYN 180
            NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPTSYYN
Sbjct: 121 NNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYN 180

Query: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240
           VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ
Sbjct: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGLF 275
           YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS  F
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSVFF 275

[Close]
BLAST of Cla012381 vs. TrEMBL
Match: A0A061FJR7_THECC (RNA-binding family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_036007 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 6.5e-117
Identity = 217/278 (78.06%), Postives = 234/278 (84.17%), Query Frame = 1 

Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+NLA QFGDTTYTKVFVGGLAWET KDTMKKYFEQFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH           GG G
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH-----------GGTG 120

Query: 121 RNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVY 180
           RNFRV+SSFQTGFGG VG+AF S  TFPHYAIQQGIPYNVYGYS YSPDYTYPTSYY+VY
Sbjct: 121 RNFRVMSSFQTGFGGGVGTAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG--GGSGQQGYGVQYPHHLFQ 240
           GGATAQYP+YG GPGG+++G   A   FYPY QFGEG+GG  G +  QGYGVQYPHH FQ
Sbjct: 181 GGATAQYPVYGAGPGGLMTG---AGTTFYPYLQFGEGTGGATGYTSGQGYGVQYPHHPFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGLFVA 277
           YS A+NST   ++PQHY A PMSL PT P L SG+ +A
Sbjct: 241 YS-AVNSTG--SYPQHYGA-PMSLAPT-PALQSGVTMA 259

[Close]
BLAST of Cla012381 vs. TrEMBL
Match: A0A067KP04_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07989 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 8.6e-117
Identity = 216/279 (77.42%), Postives = 235/279 (84.23%), Query Frame = 1 

Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+NLA QFGDTTYTKVFVGGLAWET KDTMKKYFEQFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFR+P+AAM+ACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH          GGG G
Sbjct: 61  FVTFRDPEAAMKACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH----------GGGAG 120

Query: 121 RNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVY 180
           RNFRV+SSFQTGFGG VG+AF S  +FPHYAIQQGIPYNVYGYS YSPDY+YPTSYY+VY
Sbjct: 121 RNFRVMSSFQTGFGGGVGTAFPSAASFPHYAIQQGIPYNVYGYSPYSPDYSYPTSYYSVY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQ---QGYGVQYPHHLF 240
           GGATAQYPMYGTGPGG+++G   AA AFYPY QFGEG+GG  +G    Q YG+QYPHH+F
Sbjct: 181 GGATAQYPMYGTGPGGMMTG---AATAFYPYLQFGEGNGGAATGYASGQSYGIQYPHHMF 240

Query: 241 QYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGLFVA 277
           QYS AINST    +PQ Y A PMSL PT   L SG+ VA
Sbjct: 241 QYS-AINSTGG--YPQQYGA-PMSLAPT-AALQSGVTVA 261

[Close]
BLAST of Cla012381 vs. TrEMBL
Match: A0A061FIL6_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_036007 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 2.5e-116
Identity = 213/268 (79.48%), Postives = 228/268 (85.07%), Query Frame = 1 

Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+NLA QFGDTTYTKVFVGGLAWET KDTMKKYFEQFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH           GG G
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH-----------GGTG 120

Query: 121 RNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVY 180
           RNFRV+SSFQTGFGG VG+AF S  TFPHYAIQQGIPYNVYGYS YSPDYTYPTSYY+VY
Sbjct: 121 RNFRVMSSFQTGFGGGVGTAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG--GGSGQQGYGVQYPHHLFQ 240
           GGATAQYP+YG GPGG+++G   A   FYPY QFGEG+GG  G +  QGYGVQYPHH FQ
Sbjct: 181 GGATAQYPVYGAGPGGLMTG---AGTTFYPYLQFGEGTGGATGYTSGQGYGVQYPHHPFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTP 267
           YS A+NST   ++PQHY A PMSL PTP
Sbjct: 241 YS-AVNSTG--SYPQHYGA-PMSLAPTP 250

[Close]
BLAST of Cla012381 vs. TrEMBL
Match: U5FH01_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09640g PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 4.2e-116
Identity = 217/280 (77.50%), Postives = 235/280 (83.93%), Query Frame = 1 

Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+NLA QFGDTTYTKVFVGGLAWET K+TMKKYFEQFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLAS+GVQRSKPSTPKH           GG G
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASMGVQRSKPSTPKH-----------GGAG 120

Query: 121 RNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVY 180
           RNFRV+SSFQTGFGG VG+AF    +FPHYAIQQG+PYNVYGYSSYSPDYTYPTSYYNVY
Sbjct: 121 RNFRVMSSFQTGFGGGVGTAFPPAASFPHYAIQQGMPYNVYGYSSYSPDYTYPTSYYNVY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQ----QGYGVQYPHHL 240
           GGATAQYPMYGTG GG+++G   +AAAFYPY QFGEGSGG  +      Q YGVQYP++L
Sbjct: 181 GGATAQYPMYGTGHGGLMNG---SAAAFYPYLQFGEGSGGAATSYPTSGQSYGVQYPYNL 240

Query: 241 FQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGLFVA 277
           FQYS AINST    +PQHY A PMSL PT   LPSG+ +A
Sbjct: 241 FQYS-AINSTTG-GYPQHYGA-PMSLAPT-AALPSGVTLA 262

[Close]
BLAST of Cla012381 vs. NCBI nr
Match: gi|659119151|ref|XP_008459503.1| (PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo])

HSP 1 Score: 550.4 bits (1417), Expect = 2.1e-153
Identity = 267/278 (96.04%), Postives = 272/278 (97.84%), Query Frame = 1 

Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT GGGGG 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT-GGGGGR 120

Query: 121 RNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYN 180
            NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPTSYYN
Sbjct: 121 NNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYN 180

Query: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240
           VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ
Sbjct: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGLFVA 277
           YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSG+ +A
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMA 277

[Close]
BLAST of Cla012381 vs. NCBI nr
Match: gi|659119153|ref|XP_008459504.1| (PREDICTED: RNA-binding protein 24 isoform X2 [Cucumis melo])

HSP 1 Score: 547.7 bits (1410), Expect = 1.4e-152
Identity = 266/276 (96.38%), Postives = 269/276 (97.46%), Query Frame = 1 

Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT GGGGG 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT-GGGGGR 120

Query: 121 RNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYN 180
            NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPTSYYN
Sbjct: 121 NNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYN 180

Query: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240
           VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ
Sbjct: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGLF 275
           YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS  F
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSVFF 275

[Close]
BLAST of Cla012381 vs. NCBI nr
Match: gi|659119155|ref|XP_008459505.1| (PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo])

HSP 1 Score: 530.0 bits (1364), Expect = 3.0e-147
Identity = 259/278 (93.17%), Postives = 264/278 (94.96%), Query Frame = 1 

Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKH         GGGGG 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH---------GGGGGR 120

Query: 121 RNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYN 180
            NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPTSYYN
Sbjct: 121 NNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYN 180

Query: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240
           VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ
Sbjct: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGLFVA 277
           YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSG+ +A
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMA 269

[Close]
BLAST of Cla012381 vs. NCBI nr
Match: gi|659119157|ref|XP_008459506.1| (PREDICTED: RNA-binding protein 24 isoform X4 [Cucumis melo])

HSP 1 Score: 527.3 bits (1357), Expect = 1.9e-146
Identity = 258/276 (93.48%), Postives = 261/276 (94.57%), Query Frame = 1 

Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPDAAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTPKH         GGGGG 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH---------GGGGGR 120

Query: 121 RNFRVLSS-FQTGFGGNVGSAFHSP-TTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYN 180
            NFRVLSS FQ+GFGGNVGSAFHSP TTFPHYAIQQGIPYN+YGYSSYSPDYTYPTSYYN
Sbjct: 121 NNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYN 180

Query: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240
           VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ
Sbjct: 181 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQ 240

Query: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGLF 275
           YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS  F
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSVFF 267

[Close]
BLAST of Cla012381 vs. NCBI nr
Match: gi|1009175295|ref|XP_015868803.1| (PREDICTED: RNA-binding protein 24-A-like [Ziziphus jujuba])

HSP 1 Score: 431.4 bits (1108), Expect = 1.4e-117
Identity = 221/277 (79.78%), Postives = 237/277 (85.56%), Query Frame = 1 

Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+NLA QFGDTTYTKVFVGGLAWET K+TMKKYFEQFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAP+IDGRRANCNLASLGVQRSKPSTPKH           GG G
Sbjct: 61  FVTFREPEAAMRACVDAAPMIDGRRANCNLASLGVQRSKPSTPKH-----------GGAG 120

Query: 121 RNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVY 180
           RNFRV+ SFQT  GG VG+AF S  TFPHYAIQQGIPYNVYGYS YSPDYTYPTSYY +Y
Sbjct: 121 RNFRVMGSFQT-VGGGVGTAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGLY 180

Query: 181 GGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGG----SGQQGYGVQYPHHL 240
           GGAT+QYPMYGTGPGG+++G AAAAAAFYPY QFGEGSGGGG    S  QGYG+QYPHHL
Sbjct: 181 GGATSQYPMYGTGPGGMVTG-AAAAAAFYPYLQFGEGSGGGGATGYSSGQGYGIQYPHHL 240

Query: 241 FQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGL 274
           FQYS AINS+AA  +PQHY A PMSL P+ P L SGL
Sbjct: 241 FQYS-AINSSAA--YPQHYGA-PMSLSPS-PALQSGL 259

The following BLAST results are available for this feature:
BLAST of Cla012381 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARP1_ARATH5.5e-3237.59Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1[more]
RBM24_XENTR2.2e-2537.80RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1[more]
RBM24_HUMAN4.9e-2538.84RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1[more]
RBM24_MOUSE8.4e-2538.84RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1[more]
RBM38_MOUSE8.4e-2537.69RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2[more]
BLAST of Cla012381 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUN6_CUCSA9.7e-15396.38Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647270 PE=4 SV=1[more]
A0A061FJR7_THECC6.5e-11778.06RNA-binding family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_036007... [more]
A0A067KP04_JATCU8.6e-11777.42Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07989 PE=4 SV=1[more]
A0A061FIL6_THECC2.5e-11679.48RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_036007 PE=4 SV=1[more]
U5FH01_POPTR4.2e-11677.50Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09640g PE=4 SV=1[more]
BLAST of Cla012381 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119151|ref|XP_008459503.1|2.1e-15396.04PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo][more]
gi|659119153|ref|XP_008459504.1|1.4e-15296.38PREDICTED: RNA-binding protein 24 isoform X2 [Cucumis melo][more]
gi|659119155|ref|XP_008459505.1|3.0e-14793.17PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo][more]
gi|659119157|ref|XP_008459506.1|1.9e-14693.48PREDICTED: RNA-binding protein 24 isoform X4 [Cucumis melo][more]
gi|1009175295|ref|XP_015868803.1|1.4e-11779.78PREDICTED: RNA-binding protein 24-A-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003729 mRNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU50409watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012381Cla012381.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU50409WMU50409transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..73
score: 2.0
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..89
score: 1.2
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 16..100
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 12..120
score: 2.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 15..103
score: 8.73
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 258..267
score: 8.8E-36coord: 12..97
score: 8.8
NoneNo IPR availablePANTHERPTHR24012:SF421SUBFAMILY NOT NAMEDcoord: 258..267
score: 8.8E-36coord: 12..97
score: 8.8