CmaCh01G008830 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G008830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA-binding protein 38
LocationCma_Chr01 : 5074784 .. 5076644 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCTTTCCTTTTTTTTTTCCACTTTAACCCAAACAAACATCCAATATTTGCTGTCTTCCCTTCCCTCACTTGCATCACCCAATTTCACTTTCTCTTTTACCTAATTATTGTGTCTCTCTCTTCTTCCTCTCTCCTCACCCCTCCATTTGCTGTTGTGAGATCTAATCTGAAAAACCAAAGACGAGCATCAGTGAAGGTTGGAAGAGCATGAGTCCAGCTAACTTGGGAGCTCAGTTTGGAGACACCACTTACACCAAGGTCTTCGTGGGCGGCTTGGCTTGGGAGACCCACAAGGACACCATGAACAAATACTTCCAACAGTTTGGGGATATCTTGGAAGCCGTTGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTACGCTTCCTTCTTCTTTTCTTTACTCTTTTAACAACAACAACTCTTTTAACAACTCTTCATTTCAGGTCACTTTCCGGGAGCCCGAAGCCGCTATGAGGGCTTGCGTGGATGCTGCTCCGGTGATCGACGGGCGGAGGGCTAATTGCAACCTCGCTTCTCTCGGGGTTCAAAGATCCAAACCCTCAACACCCAACCACGGTACTATAACTCAGATCTACCAAATCTATCATCATTTCCACCAAACCCACAATTTTTTAATCATTCATTTGTTTTTAATTTGTGTTTAAAGAGAAAAAGAAATGGGAATTGGCAGGCGGCGGCGGAGGTGGAGGAAGAAACTTTAGGGTATTGAGCTGTTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCACCAAGGGATCCCTTACAATCTCTATGGGTAAATTTATATTTTATCGCTTTACTTTATTACACTACAACCATTAATTCTTCATCACTCTAAATTACTTCATTTCTTTTACTGCATGCATTGCCACAGTAACTACTATTTTAATTACCTCCTCATTGCTATTGTTTTAGGTACTCTTCCTATTCCCCGGACTTCACTTACCCTACGGTTTGTACTCACATCTCTTTTTTACCTTCATTAATACTTCTTTAGGGAAGGGTGAAAAGTAAAAGATTCTGTATATTATCTGGTCAAAGGGTTCAAAACTGAAAGTTAACAAAACCAATTTCCTGTTTTACTTGTCTTGTCGTTTTAATGGGACACTTTCTGTTTTTGCAATTAATATTGTAACAGACCCCCTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTATGGGTTTTGTTATACGTTGATTCATNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGGGTTTTGTTATACGTTGATTCATGCATTATAATCATGAAATTGTAGCCTACCACTTTGGAATATTAATTTTTATTTTATTTTATTTTGATTTAGAGCTATTACAATGTGTACGGTGGCGCAACTGCACAGTACCCTGTGTATAGTACTGGTCCCGGCGGCTTAATGAGTGGTGCGGCGGCGTTCTACCCGTATTTCCAGTTTGGGGAAGGAAGTGGCGGCGGCGGCGGAGCCAATGGGTTCAGTGTCGGTTCTGGTCAACAGGGTTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCGGCTGGGATTAATTCAACTGCAACCACGTTCCCACAGCACTATGGTGGTCCTCCTATGTCTCTCCCGCCCACGCCACCCACCCTGCCATCAGGTACTCTTTTATGTTATGTTCTTTACTTATAAACTCATGATATGATTTATGTACACGTACTAATATTTTTGACAGTGTTTTTTGCTGTGCCACAGGCGTGACAATGGCTCTAACTGCACCAATCCCACATCGCTAG

mRNA sequence

CTTTCTTTCCTTTTTTTTTTCCACTTTAACCCAAACAAACATCCAATATTTGCTGTCTTCCCTTCCCTCACTTGCATCACCCAATTTCACTTTCTCTTTTACCTAATTATTGTGTCTCTCTCTTCTTCCTCTCTCCTCACCCCTCCATTTGCTGTTGTGAGATCTAATCTGAAAAACCAAAGACGAGCATCAGTGAAGGTTGGAAGAGCATGAGTCCAGCTAACTTGGGAGCTCAGTTTGGAGACACCACTTACACCAAGGTCTTCGTGGGCGGCTTGGCTTGGGAGACCCACAAGGACACCATGAACAAATACTTCCAACAGTTTGGGGATATCTTGGAAGCCGTTGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTCACTTTCCGGGAGCCCGAAGCCGCTATGAGGGCTTGCGTGGATGCTGCTCCGGTGATCGACGGGCGGAGGGCTAATTGCAACCTCGCTTCTCTCGGGGTTCAAAGATCCAAACCCTCAACACCCAACCACGGCGGCGGCGGAGGTGGAGGAAGAAACTTTAGGGTATTGAGCTGTTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCCCCGGACTTCACTTACCCTACGAGCTATTACAATGTGTACGGTGGCGCAACTGCACAGTACCCTGTGTATAGTACTGGTCCCGGCGGCTTAATGAGTGGTGCGGCGGCGTTCTACCCGTATTTCCAGTTTGGGGAAGGAAGTGGCGGCGGCGGCGGAGCCAATGGGTTCAGTGTCGGTTCTGGTCAACAGGGTTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCGGCTGGGATTAATTCAACTGCAACCACGTTCCCACAGCACTATGGTGGTCCTCCTATGTCTCTCCCGCCCACGCCACCCACCCTGCCATCAGGCGTGACAATGGCTCTAACTGCACCAATCCCACATCGCTAG

Coding sequence (CDS)

ATGAGTCCAGCTAACTTGGGAGCTCAGTTTGGAGACACCACTTACACCAAGGTCTTCGTGGGCGGCTTGGCTTGGGAGACCCACAAGGACACCATGAACAAATACTTCCAACAGTTTGGGGATATCTTGGAAGCCGTTGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTCACTTTCCGGGAGCCCGAAGCCGCTATGAGGGCTTGCGTGGATGCTGCTCCGGTGATCGACGGGCGGAGGGCTAATTGCAACCTCGCTTCTCTCGGGGTTCAAAGATCCAAACCCTCAACACCCAACCACGGCGGCGGCGGAGGTGGAGGAAGAAACTTTAGGGTATTGAGCTGTTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCCCCGGACTTCACTTACCCTACGAGCTATTACAATGTGTACGGTGGCGCAACTGCACAGTACCCTGTGTATAGTACTGGTCCCGGCGGCTTAATGAGTGGTGCGGCGGCGTTCTACCCGTATTTCCAGTTTGGGGAAGGAAGTGGCGGCGGCGGCGGAGCCAATGGGTTCAGTGTCGGTTCTGGTCAACAGGGTTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCGGCTGGGATTAATTCAACTGCAACCACGTTCCCACAGCACTATGGTGGTCCTCCTATGTCTCTCCCGCCCACGCCACCCACCCTGCCATCAGGCGTGACAATGGCTCTAACTGCACCAATCCCACATCGCTAG

Protein sequence

MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNVYGGATAQYPVYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR
Homology
[Close]
BLAST of CmaCh01G008830 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-26
Identity = 104/270 (38.52%), Postives = 133/270 (49.26%), Query Frame = 1 

Query: 5   NLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTF 64
           N+   FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGFVTF
Sbjct: 6   NVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF 65

Query: 65  REPEAAMRACVDAAPVIDGRRANCNLASLG--VQRSKPSTPNHGGGGGGGRNFRVLSCFQ 124
           ++ +AA RAC D+ P+I+GRRANCNLASLG  +++S   T    G   G R         
Sbjct: 66  KDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNR--------- 125

Query: 125 SGFGGNVGSAFHSTPTFP--------HYAVHQGIPYNLYGYSS--YSPDFTYPTSYYNVY 184
                +VG+  HS   +P            HQ +P+  YGY S   +P+ T+      V 
Sbjct: 126 -ATPPHVGN--HSQWYYPSGFTNQQHQQQNHQAVPF--YGYPSAYVAPNMTFNQKVGYVG 185

Query: 185 GGATAQYPVYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQYPHHL 244
           G        Y  G    M       P  Q+      GGG       S    +   YP+H 
Sbjct: 186 G-------TYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYH- 245

Query: 245 FQYSAGINSTATTFPQHYGGPPMSLPPTPP 263
                   S A  FPQ     P+S   TPP
Sbjct: 246 -------QSQAIGFPQPSFSKPLSF-STPP 245

[Close]
BLAST of CmaCh01G008830 vs. Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-23
Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = 1 

Query: 2   SPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGF 61
           +P+ +     DTT+TK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GYGF
Sbjct: 18  APSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 77

Query: 62  VTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQ 97
           VT  +  AA RAC D  P+IDGR+AN NLA LG +
Sbjct: 78  VTMADRAAADRACKDPNPIIDGRKANVNLAYLGAK 112

[Close]
BLAST of CmaCh01G008830 vs. Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-23
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 7   GAQFG---DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVT 66
           GA  G   DTT+TK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GYGFVT
Sbjct: 22  GAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 81

Query: 67  FREPEAAMRACVDAAPVIDGRRANCNLASLGVQ 97
             +  AA RAC D  P+IDGR+AN NLA LG +
Sbjct: 82  MADRAAAERACKDPNPIIDGRKANVNLAYLGAK 114

[Close]
BLAST of CmaCh01G008830 vs. Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-23
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1 

Query: 12 DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
          DTT+TK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]
BLAST of CmaCh01G008830 vs. Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-22
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1 

Query: 12 DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
          DTT+TK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ T +S+GYGFVT  +  AA 
Sbjct: 7  DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]
BLAST of CmaCh01G008830 vs. TrEMBL
Match: A0A0A0KUN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647270 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 1.3e-123
Identity = 234/280 (83.57%), Postives = 245/280 (87.50%), Query Frame = 1 

Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           M+P+NL +QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNH-------GGGGGGGR 120
           FVTFREP+AAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP H        GGGGG  
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSC-FQSGFGGNVGSAFHS-TPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNV 180
           NFRVLS  FQSGFGGNVGSAFHS T TFPHYA+ QGIPYNLYGYSSYSPD+TYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPVYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQ 240
           YGGATAQYP+Y TGPGG++SG    AAAFYPYFQFGEGSGGG        GSGQQGYGVQ
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG--------GSGQQGYGVQ 240

Query: 241 YPHHLFQYSAGINST-ATTFPQHYGGPPMSLPPTPPTLPS 267
           YPHHLFQYSA INST ATTFPQHY  PPMSLPPTPPTLPS
Sbjct: 241 YPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS 272

[Close]
BLAST of CmaCh01G008830 vs. TrEMBL
Match: A0A0S3SEZ8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G269300 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 1.5e-114
Identity = 217/280 (77.50%), Postives = 238/280 (85.00%), Query Frame = 1 

Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           M+P NL  QFGDTTYTKVFVGGLAWET K+TM KYF+QFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSC 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP H GGGGGGRNFRV+  
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH-GGGGGGRNFRVMGS 120

Query: 121 FQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNVYGGATAQYP 180
           FQ+GFGG VGSAF S  TFPHYA+ QGIPYN+YGYS YSPD+TYPTSYY VYGGATAQYP
Sbjct: 121 FQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYP 180

Query: 181 VYSTGPGGLMSGAAAFYPYFQF-GEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQYSAGI 240
           VY +GPGG+M+GAAAFYPY Q+ GEGSGGGG + G+S G   QGYGV Y  HLFQYS   
Sbjct: 181 VYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSG---QGYGVNYAPHLFQYSPIA 240

Query: 241 NSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 280
           ++ A  + QHY G PMSL P+ P L SGVT++L APIPHR
Sbjct: 241 STAAGAYAQHY-GTPMSLAPS-PALQSGVTVSLQAPIPHR 274

[Close]
BLAST of CmaCh01G008830 vs. TrEMBL
Match: A0A0L9V9I9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g214100 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 1.5e-114
Identity = 217/280 (77.50%), Postives = 238/280 (85.00%), Query Frame = 1 

Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           M+P NL  QFGDTTYTKVFVGGLAWET K+TM KYF+QFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSC 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP H GGGGGGRNFRV+  
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH-GGGGGGRNFRVMGS 120

Query: 121 FQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNVYGGATAQYP 180
           FQ+GFGG VGSAF S  TFPHYA+ QGIPYN+YGYS YSPD+TYPTSYY VYGGATAQYP
Sbjct: 121 FQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYP 180

Query: 181 VYSTGPGGLMSGAAAFYPYFQF-GEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQYSAGI 240
           VY +GPGG+M+GAAAFYPY Q+ GEGSGGGG + G+S G   QGYGV Y  HLFQYS   
Sbjct: 181 VYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSG---QGYGVNYAPHLFQYSPIA 240

Query: 241 NSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 280
           ++ A  + QHY G PMSL P+ P L SGVT++L APIPHR
Sbjct: 241 STAAGAYAQHY-GTPMSLAPS-PALQSGVTVSLQAPIPHR 274

[Close]
BLAST of CmaCh01G008830 vs. TrEMBL
Match: V7ACX4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G003400g PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 9.5e-114
Identity = 216/280 (77.14%), Postives = 236/280 (84.29%), Query Frame = 1 

Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           M+P NL  QFGDTTYTKVFVGGLAWET K+TM KYF+QFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSC 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP HGGGGG  RN RV+  
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGG--RNLRVMGS 120

Query: 121 FQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNVYGGATAQYP 180
           FQ+GFGG VGSAF S  TFPHYA+ QGIPYN+YGYS YSPD+TYPTSYY VYGGATAQYP
Sbjct: 121 FQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYP 180

Query: 181 VYSTGPGGLMSGAAAFYPYFQF-GEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQYSAGI 240
           VY +GPGG+M+GAAAFYPY Q+ GEGSGGGG + G+S G   QGYGV Y  HLFQYS   
Sbjct: 181 VYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSG---QGYGVNYAPHLFQYSPIA 240

Query: 241 NSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 280
           ++ A  + QHY G PMSL P+ P L SGVTM+L APIPHR
Sbjct: 241 STAAGAYAQHY-GTPMSLAPS-PALQSGVTMSLQAPIPHR 273

[Close]
BLAST of CmaCh01G008830 vs. TrEMBL
Match: A0A061FJR7_THECC (RNA-binding family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_036007 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 1.2e-111
Identity = 216/273 (79.12%), Postives = 233/273 (85.35%), Query Frame = 1 

Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           M+PANL  QFGDTTYTKVFVGGLAWET KDTM KYF+QFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSC 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP HGG G   RNFRV+S 
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGTG---RNFRVMSS 120

Query: 121 FQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNVYGGATAQYP 180
           FQ+GFGG VG+AF S  TFPHYA+ QGIPYN+YGYS YSPD+TYPTSYY+VYGGATAQYP
Sbjct: 121 FQTGFGGGVGTAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGGATAQYP 180

Query: 181 VYSTGPGGLMSGA-AAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQYSAGI 240
           VY  GPGGLM+GA   FYPY QFGEG+   GGA G++ G   QGYGVQYPHH FQYSA +
Sbjct: 181 VYGAGPGGLMTGAGTTFYPYLQFGEGT---GGATGYTSG---QGYGVQYPHHPFQYSA-V 240

Query: 241 NSTATTFPQHYGGPPMSLPPTPPTLPSGVTMAL 273
           NST  ++PQHYG  PMSL PT P L SGVTMAL
Sbjct: 241 NSTG-SYPQHYGA-PMSLAPT-PALQSGVTMAL 260

[Close]
BLAST of CmaCh01G008830 vs. TAIR10
Match: AT1G33470.1 (AT1G33470.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-66
Identity = 147/259 (56.76%), Postives = 181/259 (69.88%), Query Frame = 1 

Query: 12  DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTT+TKVFVGGLAWETHK ++  YF+QFGDI+EAVVITDK++GRSKGYGFVTF +PEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSCFQSGFGGNVGS 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H  G  GGR  +V S F++ F G   +
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH--GHVGGRGMKVTSPFKTHF-GTAAT 122

Query: 132 AFHSTPTFPHYAVHQGIPY-NLYGYSSYSPDFTYPT-SYYNVYGGATAQYPVYSTGP--G 191
           A  S   F HY     +PY N +G+SSYS D+ YPT SYYNVYGGATAQ+P+Y +GP  G
Sbjct: 123 AIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTG 182

Query: 192 GLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQYSAGINSTATTFP 251
              + AA FYPY QF EG+   G   G++         + YP+H+F YSA        +P
Sbjct: 183 VAAAPAAGFYPYLQFAEGN---GPVTGYA--------PLHYPNHMFHYSA----PGGNYP 237

Query: 252 QHYGGPPMSLPPTPPTLPS 267
            H+ G P+SL P+ P +PS
Sbjct: 243 -HHNGSPVSLAPS-PVIPS 237

[Close]
BLAST of CmaCh01G008830 vs. TAIR10
Match: AT1G22910.3 (AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 228.8 bits (582), Expect = 4.1e-60
Identity = 143/275 (52.00%), Postives = 171/275 (62.18%), Query Frame = 1 

Query: 7   GAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRE 66
           G   GDTTYTKVFVGGLAWETHK+TM K+F+QFG+ILEAVVITDKA+GRSKGYGFVTFRE
Sbjct: 4   GIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63

Query: 67  PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSCFQSGFG 126
            EAA  ACVDA PVIDGRRANCNLASLG+QRSKPSTPNHGGGG       ++S  Q+GFG
Sbjct: 64  AEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFG 123

Query: 127 GNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDF-TYPTSYYNVYGGAT-AQYPVY-- 186
                     PTF HY     +P NL+GYS YSPD+ ++PT+ Y +YG  +  QY VY  
Sbjct: 124 PPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGN 183

Query: 187 -STGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQYSAGINS 246
            ++G GGL + AA+  P++        GGG  G      Q  Y     HHL  Y+     
Sbjct: 184 RNSGGGGLTAAAASATPFYPC------GGGHGGVQFSQPQPFY-----HHLSSYN----- 243

Query: 247 TATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPI 277
                P HY  P  S+        S  T + + P+
Sbjct: 244 -----PHHYSPPTFSMQQGSRNRLSASTTSYSLPL 251

[Close]
BLAST of CmaCh01G008830 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-42
Identity = 122/283 (43.11%), Postives = 152/283 (53.71%), Query Frame = 1 

Query: 12  DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DT  TK+FVGGLAWET +DTM +YF+QFG+I+EAVVITDK TGRSKGYGFVTF+E EAAM
Sbjct: 18  DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPST-PNHGGG--GGGGRNFRVLSCFQSGFGGN 131
           RAC +  PVIDGRRANCNLA LG Q+ +P T P HG G     G    +++      G +
Sbjct: 78  RACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVGLVAPSPQFRGSS 137

Query: 132 VGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYN--VYGGATAQYPVY---- 191
             SAF       H A     PY+ YG+S YS +  YP +YYN  +YGG   Q+  Y    
Sbjct: 138 SSSAFVHQQQQQHTAQFP-FPYSTYGFSGYSQEGMYPMNYYNHHLYGG--QQFSPYMGHP 197

Query: 192 STGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQYPHH---LFQYSAGI 251
           S G  G+  G   +YP +   +              S Q    VQ  HH    FQY+A  
Sbjct: 198 SAGSTGMFHGFYPYYPQYNAAQ-------------SSNQAQAQVQAQHHQGFSFQYTAPP 257

Query: 252 NSTATTFP-----QHYGGPPM--SLPPTPPTLPSGVTMALTAP 276
                 +P      H+       S  P PP L    ++AL+ P
Sbjct: 258 APPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLP 284

[Close]
BLAST of CmaCh01G008830 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 158.3 bits (399), Expect = 6.9e-39
Identity = 121/266 (45.49%), Postives = 148/266 (55.64%), Query Frame = 1 

Query: 6   LGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFR 65
           L + FGDTT+TKVFVGGLAWET  +T+ ++F Q+GDILEAVVITDK TGRSKGYGFVTFR
Sbjct: 14  LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFR 73

Query: 66  EPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGR---NFRVLSCFQ 125
           +PEAA RACVD  P+IDGRRANCNLASLG  RS+P           GR       +   Q
Sbjct: 74  DPEAARRACVDPTPIIDGRRANCNLASLG--RSRPPMQYAVIPHAPGRVRPPSPYVGSVQ 133

Query: 126 SGFGGNVGS-AFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTS--YYNVYGGATAQY 185
           S  G + GS  +H  PT   Y   QG+ Y  YG + Y PD+ Y  S  +Y  Y G   QY
Sbjct: 134 SPRGLHFGSHPYHQPPT---YNYQQGVVYP-YGVTPYGPDYMYSQSQGFYGPYMG--QQY 193

Query: 186 PVYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQYSAGI 245
                 PG + S      P +Q+G+ S    GA+G++ G G    G     H+ Q  A  
Sbjct: 194 LQVYGVPGAVNS------PGYQYGQLSHTIPGAHGYTAGQGYSHPG----SHVLQLGATS 253

Query: 246 NSTATTFPQHYGGPPMS---LPPTPP 263
             +A   P      P     +  TPP
Sbjct: 254 PMSAIQSPYPSPSAPTHQRVIVQTPP 261

[Close]
BLAST of CmaCh01G008830 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-36
Identity = 116/272 (42.65%), Postives = 146/272 (53.68%), Query Frame = 1 

Query: 6   LGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFR 65
           L + FGDTT+TKVFVGGLAWET  +T+ ++F+Q+G+ILEAVVI DK TGRSKGYGFVTFR
Sbjct: 14  LNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFR 73

Query: 66  EPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSCFQSGF 125
           +PEAA RAC D  P+IDGRRANCNLASLG  R +P  P        GR  R  S +    
Sbjct: 74  DPEAARRACADPTPIIDGRRANCNLASLG--RPRPPLPYAVIPNMPGR-LRPASPYIGNV 133

Query: 126 GGNVGSAFHSTPTFPHYAVHQGIPYNL-------YGYSSYSPDFTYPTS--YYNVYGGAT 185
            G  GS         +Y   Q +PYN        YG ++Y P++ Y  S   Y+ Y G  
Sbjct: 134 QGPRGS------LIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMG-- 193

Query: 186 AQYPVYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQYS 245
            QY      PG + S      P +Q+G+ S      +G+   +  QGY V    H+ Q  
Sbjct: 194 QQYLQVYGVPGAVNS------PVYQYGQLSQTIPNGHGY---TAVQGYSVP-GSHILQLG 253

Query: 246 AGINSTATTFPQHYGGPPMSLPPTPPTLPSGV 269
               ST TT          S+P      PSG+
Sbjct: 254 GPTVSTMTT---------SSMPALQAPYPSGI 255

[Close]
BLAST of CmaCh01G008830 vs. NCBI nr
Match: gi|659119155|ref|XP_008459505.1| (PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo])

HSP 1 Score: 477.2 bits (1227), Expect = 1.9e-131
Identity = 246/286 (86.01%), Postives = 257/286 (89.86%), Query Frame = 1 

Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           M+P+NL +QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSC 120
           FVTFREP+AAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP H GGGGG  NFRVLS 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH-GGGGGRNNFRVLSS 120

Query: 121 -FQSGFGGNVGSAFHS-TPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNVYGGATAQ 180
            FQSGFGGNVGSAFHS T TFPHYA+ QGIPYNLYGYSSYSPD+TYPTSYYNVYGGATAQ
Sbjct: 121 NFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNVYGGATAQ 180

Query: 181 YPVYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQ 240
           YP+Y TGPGG++SG    AAAFYPYFQFGEGSGGG        GSGQQGYGVQYPHHLFQ
Sbjct: 181 YPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG--------GSGQQGYGVQYPHHLFQ 240

Query: 241 YSAGINST-ATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 280
           YSA INST ATTFPQHY  PPMSLPPTPPTLPSGVTMAL APIPHR
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 277

[Close]
BLAST of CmaCh01G008830 vs. NCBI nr
Match: gi|659119151|ref|XP_008459503.1| (PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo])

HSP 1 Score: 473.8 bits (1218), Expect = 2.1e-130
Identity = 246/293 (83.96%), Postives = 257/293 (87.71%), Query Frame = 1 

Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           M+P+NL +QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNH-------GGGGGGGR 120
           FVTFREP+AAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP H        GGGGG  
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSC-FQSGFGGNVGSAFHS-TPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNV 180
           NFRVLS  FQSGFGGNVGSAFHS T TFPHYA+ QGIPYNLYGYSSYSPD+TYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPVYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQ 240
           YGGATAQYP+Y TGPGG++SG    AAAFYPYFQFGEGSGGG        GSGQQGYGVQ
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG--------GSGQQGYGVQ 240

Query: 241 YPHHLFQYSAGINST-ATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 280
           YPHHLFQYSA INST ATTFPQHY  PPMSLPPTPPTLPSGVTMAL APIPHR
Sbjct: 241 YPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285

[Close]
BLAST of CmaCh01G008830 vs. NCBI nr
Match: gi|659119157|ref|XP_008459506.1| (PREDICTED: RNA-binding protein 24 isoform X4 [Cucumis melo])

HSP 1 Score: 454.1 bits (1167), Expect = 1.7e-124
Identity = 234/273 (85.71%), Postives = 245/273 (89.74%), Query Frame = 1 

Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           M+P+NL +QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSC 120
           FVTFREP+AAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP H GGGGG  NFRVLS 
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH-GGGGGRNNFRVLSS 120

Query: 121 -FQSGFGGNVGSAFHS-TPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNVYGGATAQ 180
            FQSGFGGNVGSAFHS T TFPHYA+ QGIPYNLYGYSSYSPD+TYPTSYYNVYGGATAQ
Sbjct: 121 NFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNVYGGATAQ 180

Query: 181 YPVYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQ 240
           YP+Y TGPGG++SG    AAAFYPYFQFGEGSGGG        GSGQQGYGVQYPHHLFQ
Sbjct: 181 YPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG--------GSGQQGYGVQYPHHLFQ 240

Query: 241 YSAGINST-ATTFPQHYGGPPMSLPPTPPTLPS 267
           YSA INST ATTFPQHY  PPMSLPPTPPTLPS
Sbjct: 241 YSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS 264

[Close]
BLAST of CmaCh01G008830 vs. NCBI nr
Match: gi|659119153|ref|XP_008459504.1| (PREDICTED: RNA-binding protein 24 isoform X2 [Cucumis melo])

HSP 1 Score: 450.7 bits (1158), Expect = 1.9e-123
Identity = 234/280 (83.57%), Postives = 245/280 (87.50%), Query Frame = 1 

Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           M+P+NL +QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNH-------GGGGGGGR 120
           FVTFREP+AAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP H        GGGGG  
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSC-FQSGFGGNVGSAFHS-TPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNV 180
           NFRVLS  FQSGFGGNVGSAFHS T TFPHYA+ QGIPYNLYGYSSYSPD+TYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPVYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGVQ 240
           YGGATAQYP+Y TGPGG++SG    AAAFYPYFQFGEGSGGG        GSGQQGYGVQ
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG--------GSGQQGYGVQ 240

Query: 241 YPHHLFQYSAGINST-ATTFPQHYGGPPMSLPPTPPTLPS 267
           YPHHLFQYSA INST ATTFPQHY  PPMSLPPTPPTLPS
Sbjct: 241 YPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS 272

[Close]
BLAST of CmaCh01G008830 vs. NCBI nr
Match: gi|920709317|gb|KOM51314.1| (hypothetical protein LR48_Vigan08g214100 [Vigna angularis])

HSP 1 Score: 420.6 bits (1080), Expect = 2.1e-114
Identity = 217/280 (77.50%), Postives = 238/280 (85.00%), Query Frame = 1 

Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           M+P NL  QFGDTTYTKVFVGGLAWET K+TM KYF+QFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHGGGGGGGRNFRVLSC 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP H GGGGGGRNFRV+  
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH-GGGGGGRNFRVMGS 120

Query: 121 FQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPTSYYNVYGGATAQYP 180
           FQ+GFGG VGSAF S  TFPHYA+ QGIPYN+YGYS YSPD+TYPTSYY VYGGATAQYP
Sbjct: 121 FQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYP 180

Query: 181 VYSTGPGGLMSGAAAFYPYFQF-GEGSGGGGGANGFSVGSGQQGYGVQYPHHLFQYSAGI 240
           VY +GPGG+M+GAAAFYPY Q+ GEGSGGGG + G+S G   QGYGV Y  HLFQYS   
Sbjct: 181 VYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSG---QGYGVNYAPHLFQYSPIA 240

Query: 241 NSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 280
           ++ A  + QHY G PMSL P+ P L SGVT++L APIPHR
Sbjct: 241 STAAGAYAQHY-GTPMSLAPS-PALQSGVTVSLQAPIPHR 274

The following BLAST results are available for this feature:
BLAST of CmaCh01G008830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARP1_ARATH2.2e-2638.52Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1[more]
RBM38_MOUSE1.0e-2355.79RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2[more]
RBM38_HUMAN1.3e-2359.14RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2[more]
RBM38_XENTR2.2e-2361.18RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1[more]
RBM38_XENLA1.1e-2260.00RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2[more]
BLAST of CmaCh01G008830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUN6_CUCSA1.3e-12383.57Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647270 PE=4 SV=1[more]
A0A0S3SEZ8_PHAAN1.5e-11477.50Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G269300 PE=... [more]
A0A0L9V9I9_PHAAN1.5e-11477.50Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g214100 PE=4 SV=1[more]
V7ACX4_PHAVU9.5e-11477.14Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G003400g PE=4 SV=1[more]
A0A061FJR7_THECC1.2e-11179.12RNA-binding family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_036007... [more]
BLAST of CmaCh01G008830 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G33470.15.1e-6656.76 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G22910.34.1e-6052.00 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G46780.11.3e-4243.11 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G20880.16.9e-3945.49 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G76460.11.1e-3642.65 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmaCh01G008830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119155|ref|XP_008459505.1|1.9e-13186.01PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo][more]
gi|659119151|ref|XP_008459503.1|2.1e-13083.96PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo][more]
gi|659119157|ref|XP_008459506.1|1.7e-12485.71PREDICTED: RNA-binding protein 24 isoform X4 [Cucumis melo][more]
gi|659119153|ref|XP_008459504.1|1.9e-12383.57PREDICTED: RNA-binding protein 24 isoform X2 [Cucumis melo][more]
gi|920709317|gb|KOM51314.1|2.1e-11477.50hypothetical protein LR48_Vigan08g214100 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G008830.1CmaCh01G008830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..73
score: 3.9
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..89
score: 1.2
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 16..100
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 13..112
score: 4.5
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 12..114
score: 2.55
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 12..97
score: 3.5E-36coord: 253..275
score: 3.5
NoneNo IPR availablePANTHERPTHR24012:SF421SUBFAMILY NOT NAMEDcoord: 253..275
score: 3.5E-36coord: 12..97
score: 3.5