CmoCh01G009270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G009270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-binding protein 38
LocationCmo_Chr01 : 5331589 .. 5333284 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTCACCCCTCCATTTGTTGTTCTGAGATCTAATCTGAAATCCCAAAGAAGAGCATGAGTGAAGGTTGGAAGAGCATGAGTCCAGCCAACTTGGGAGGTCAGTTTGGAGACACCACTTACACCAAGGTCTTCGTGGGCGGCTTGGCTTGGGAGACCCACAAGGACACCATGAACAAATACTTCCAACAGTTTGGGGATATCTTGGAAGCCGTTGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTACGTCTCTTCTTTACTCTTTTAATTAACCCAACTCTTCAATTTAACTAACTAACTAACTCCTTAACTCTTCAATTCAGGTCACTTTCCGGGACCCCGAAGCCGCCATGAGGGCTTGCGTGGATGCTGCTCCGGTCATCGACGGGCGGAGGGCCAATTGCAACCTCGCTTCTCTTGGGGTTCAAAGATCCAAACCCTCAACACCCAACCACGGTAACTATAACTCAGATCTACCAAATCTATCATCATTTCCACCAAACCCACAATTTTTTAATCATTCATTTGTTTTCAATTTGTGTTAAAGAGAAAAAGAAATGGGAATTGGCAGGCGGAGGAGGAGGCGGCGGCGGCGGTGGTGGAGGAAGAAACTTTAGGGTATTGAGCTGTTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCGTTATGCTGTCCACCAAGGGATCCCTTACAATCTCTATGGGTAAATTTATATTATATATATATTCTCTCTCTCTTCGCTTTACTTTATTACTACAACCATTAATTCCTTTTTTTTTTTTTTTTTACTGCATGCATTGCCACTGTAACTATTCATTTAATCACCTCCTCATTGCTATTGTTTTAGGTACTCTTCCTATTCACCCGACTACAATTACCCTACGGTTTGTACTCACAACTTCTCTTTCTACCTTCCTTAATACTTCTTTAGGGGAGGGTAAAAAGTAAAAGATTCTGAACCAATCTGGTCAAAGGGTTCAAAAGTGAAAGTTAACCAAACCAATTTGGTGTTTTTCTTGTCTTGTCGTTTTATGGGACACTTTCTGTTTTTGCAATTAATATTGTAACAGACCATTTTTTTTTTTTTTTTTTGTATGGGTTTGGTTATACTTTGATTCATGCATTATAATCCTGAAATTGTAGCCGACCACTTTGGAATATTAATTTTTTTTTTTTTTAAATTTTGATTTAGAGCTATTACAATGTGTACGGCGGCGCAACTGCTCAGTACCCTATGTATAGTACTGGTCCCGGCGGCTTAATGAGTGGTGCGGCGGCGTTCTACCCGTATTTCCAGTTTGGGGAAGGAAGTGGCGGCGGCGGAGCCAATGGGTTCAGTGCTGGTTCTGGTCAACAGGGTTATGGGGGTCAGTACCCTCACCATCTGTTTCAGTACTCGGCTGGGATTAATTCAACTGCAACCACGCTCCCACAGCACTATGGTGGTCCTCCTATGTCTCTCCCGCTCACGCCACCCACCCTGCCGTCAGGTAGTGGCTCTTTTATATTATATTCCTTACTTATAAACTCATGATATATATAGATGTACTAATATTTTTGACAGTGTTTTTTGCTGTGCCACAGGCGTGACAATGGCTCTAACTACACCAATCCCACATCGCTAG

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTCACCCCTCCATTTGTTGTTCTGAGATCTAATCTGAAATCCCAAAGAAGAGCATGAGTGAAGGTTGGAAGAGCATGAGTCCAGCCAACTTGGGAGGTCAGTTTGGAGACACCACTTACACCAAGGTCTTCGTGGGCGGCTTGGCTTGGGAGACCCACAAGGACACCATGAACAAATACTTCCAACAGTTTGGGGATATCTTGGAAGCCGTTGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTCACTTTCCGGGACCCCGAAGCCGCCATGAGGGCTTGCGTGGATGCTGCTCCGGTCATCGACGGGCGGAGGGCCAATTGCAACCTCGCTTCTCTTGGGGTTCAAAGATCCAAACCCTCAACACCCAACCACGAGAAAAAGAAATGGGAATTGGCAGGCGGAGGAGGAGGCGGCGGCGGCGGTGGTGGAGGAAGAAACTTTAGGGTATTGAGCTGTTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCGTTATGCTGTCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCACCCGACTACAATTACCCTACGAGCTATTACAATGTGTACGGCGGCGCAACTGCTCAGTACCCTATGTATAGTACTGGTCCCGGCGGCTTAATGAGTGGTGCGGCGGCGTTCTACCCGTATTTCCAGTTTGGGGAAGGAAGTGGCGGCGGCGGAGCCAATGGGTTCAGTGCTGGTTCTGGTCAACAGGGTTATGGGGGTCAGTACCCTCACCATCTGTTTCAGTACTCGGCTGGGATTAATTCAACTGCAACCACGCTCCCACAGCACTATGGTGGTCCTCCTATGTCTCTCCCGCTCACGCCACCCACCCTGCCGTCAGGCGTGACAATGGCTCTAACTACACCAATCCCACATCGCTAG

Coding sequence (CDS)

ATGAGTGAAGGTTGGAAGAGCATGAGTCCAGCCAACTTGGGAGGTCAGTTTGGAGACACCACTTACACCAAGGTCTTCGTGGGCGGCTTGGCTTGGGAGACCCACAAGGACACCATGAACAAATACTTCCAACAGTTTGGGGATATCTTGGAAGCCGTTGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTCACTTTCCGGGACCCCGAAGCCGCCATGAGGGCTTGCGTGGATGCTGCTCCGGTCATCGACGGGCGGAGGGCCAATTGCAACCTCGCTTCTCTTGGGGTTCAAAGATCCAAACCCTCAACACCCAACCACGAGAAAAAGAAATGGGAATTGGCAGGCGGAGGAGGAGGCGGCGGCGGCGGTGGTGGAGGAAGAAACTTTAGGGTATTGAGCTGTTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCGTTATGCTGTCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCACCCGACTACAATTACCCTACGAGCTATTACAATGTGTACGGCGGCGCAACTGCTCAGTACCCTATGTATAGTACTGGTCCCGGCGGCTTAATGAGTGGTGCGGCGGCGTTCTACCCGTATTTCCAGTTTGGGGAAGGAAGTGGCGGCGGCGGAGCCAATGGGTTCAGTGCTGGTTCTGGTCAACAGGGTTATGGGGGTCAGTACCCTCACCATCTGTTTCAGTACTCGGCTGGGATTAATTCAACTGCAACCACGCTCCCACAGCACTATGGTGGTCCTCCTATGTCTCTCCCGCTCACGCCACCCACCCTGCCGTCAGGCGTGACAATGGCTCTAACTACACCAATCCCACATCGCTAG
Homology
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BLAST of CmoCh01G009270 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-26
Identity = 98/265 (36.98%), Postives = 131/265 (49.43%), Query Frame = 1 

Query: 12  NLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTF 71
           N+ G FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGFVTF
Sbjct: 6   NVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF 65

Query: 72  RDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGG 131
           +D +AA RAC D+ P+I+GRRANCNLASLG +  K  T    ++         G   G  
Sbjct: 66  KDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQ---------GPKNGNR 125

Query: 132 GRNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPTSYYNV 191
                V +  Q  +     +  H          HQ +P+  YGY S     N   +    
Sbjct: 126 ATPPHVGNHSQWYYPSGFTNQQHQQQN------HQAVPF--YGYPSAYVAPNMTFNQKVG 185

Query: 192 YGGATAQYPMYS-TGPGGLMSGAAAFYPYFQFGEGSGGGGANGFSAGSGQQGYGGQYPHH 251
           Y G T     Y+   P         +Y +  +     GGG     A S    +   YP+H
Sbjct: 186 YVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMY-----GGGRVMVGAASPMVPFYTVYPYH 245

Query: 252 LFQYSAGINSTATTLPQHYGGPPMS 276
             Q + G    + + P  +  PP+S
Sbjct: 246 QSQ-AIGFPQPSFSKPLSFSTPPIS 247

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BLAST of CmoCh01G009270 vs. Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-25
Identity = 56/97 (57.73%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 7   SMSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGY 66
           S +P+ + G   DTT+TK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GY
Sbjct: 16  SAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY 75

Query: 67  GFVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQ 104
           GFVT  D  AA RAC D  P+IDGR+AN NLA LG +
Sbjct: 76  GFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGAK 112

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BLAST of CmoCh01G009270 vs. Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 7.4e-25
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 1 

Query: 9   SPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGF 68
           +P  + G   DTT+TK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GYGF
Sbjct: 20  APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79

Query: 69  VTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQ 104
           VT  D  AA RAC D  P+IDGR+AN NLA LG +
Sbjct: 80  VTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 114

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BLAST of CmoCh01G009270 vs. Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.7e-25
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 1 

Query: 19  DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAM 78
           DTTYTK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 79  RACVDAAPVIDGRRANCNLASLGVQ 104
           RAC D  P+IDGR+AN NLA LG +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

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BLAST of CmoCh01G009270 vs. Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.7e-25
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 1 

Query: 19  DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAM 78
           DTTYTK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 79  RACVDAAPVIDGRRANCNLASLGVQ 104
           RAC D  P+IDGR+AN NLA LG +
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

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BLAST of CmoCh01G009270 vs. TrEMBL
Match: A0A0A0KUN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647270 PE=4 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 9.8e-125
Identity = 237/285 (83.16%), Postives = 246/285 (86.32%), Query Frame = 1 

Query: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67
           M+P+NL  QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127
           FVTFR+P+AAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP HEKKKWEL GGGGG  
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 128 GGGGGRNFRVLSC-FQSGFGGNVGSAFHS-TPTFPRYAVHQGIPYNLYGYSSYSPDYNYP 187
                 NFRVLS  FQSGFGGNVGSAFHS T TFP YA+ QGIPYNLYGYSSYSPDY YP
Sbjct: 121 ------NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYP 180

Query: 188 TSYYNVYGGATAQYPMYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGANGFSAGSGQQ 247
           TSYYNVYGGATAQYPMY TGPGG++SG    AAAFYPYFQFGEGSGGG       GSGQQ
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG-------GSGQQ 240

Query: 248 GYGGQYPHHLFQYSAGINST-ATTLPQHYGGPPMSLPLTPPTLPS 286
           GYG QYPHHLFQYSA INST ATT PQHY  PPMSLP TPPTLPS
Sbjct: 241 GYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS 272

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BLAST of CmoCh01G009270 vs. TrEMBL
Match: A0A0L9V9I9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g214100 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.4e-107
Identity = 212/293 (72.35%), Postives = 233/293 (79.52%), Query Frame = 1 

Query: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67
           M+P NL GQFGDTTYTKVFVGGLAWET K+TM KYF+QFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP H              G
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH--------------G 120

Query: 128 GGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPTS 187
           GGGGGRNFRV+  FQ+GFGG VGSAF S  TFP YA+ QGIPYN+YGYS YSPDY YPTS
Sbjct: 121 GGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTS 180

Query: 188 YYNVYGGATAQYPMYSTGPGGLMSGAAAFYPYFQF-GEGSGGGG-ANGFSAGSGQQGYGG 247
           YY VYGGATAQYP+Y +GPGG+M+GAAAFYPY Q+ GEGSGGGG + G+S+G   QGYG 
Sbjct: 181 YYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSG---QGYGV 240

Query: 248 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPIPHR 299
            Y  HLFQYS   ++ A    QHY G PMSL    P L SGVT++L  PIPHR
Sbjct: 241 NYAPHLFQYSPIASTAAGAYAQHY-GTPMSL-APSPALQSGVTVSLQAPIPHR 274

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BLAST of CmoCh01G009270 vs. TrEMBL
Match: A0A0S3SEZ8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G269300 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.4e-107
Identity = 212/293 (72.35%), Postives = 233/293 (79.52%), Query Frame = 1 

Query: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67
           M+P NL GQFGDTTYTKVFVGGLAWET K+TM KYF+QFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP H              G
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH--------------G 120

Query: 128 GGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPTS 187
           GGGGGRNFRV+  FQ+GFGG VGSAF S  TFP YA+ QGIPYN+YGYS YSPDY YPTS
Sbjct: 121 GGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTS 180

Query: 188 YYNVYGGATAQYPMYSTGPGGLMSGAAAFYPYFQF-GEGSGGGG-ANGFSAGSGQQGYGG 247
           YY VYGGATAQYP+Y +GPGG+M+GAAAFYPY Q+ GEGSGGGG + G+S+G   QGYG 
Sbjct: 181 YYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSG---QGYGV 240

Query: 248 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPIPHR 299
            Y  HLFQYS   ++ A    QHY G PMSL    P L SGVT++L  PIPHR
Sbjct: 241 NYAPHLFQYSPIASTAAGAYAQHY-GTPMSL-APSPALQSGVTVSLQAPIPHR 274

[Close]
BLAST of CmoCh01G009270 vs. TrEMBL
Match: A0A067KP04_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07989 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-107
Identity = 217/293 (74.06%), Postives = 237/293 (80.89%), Query Frame = 1 

Query: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67
           M+PANL GQFGDTTYTKVFVGGLAWET KDTM KYF+QFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127
           FVTFRDPEAAM+ACVDAAPVIDGRRANCNLASLGVQRSKPSTP H               
Sbjct: 61  FVTFRDPEAAMKACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH--------------- 120

Query: 128 GGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPTS 187
           GGG GRNFRV+S FQ+GFGG VG+AF S  +FP YA+ QGIPYN+YGYS YSPDY+YPTS
Sbjct: 121 GGGAGRNFRVMSSFQTGFGGGVGTAFPSAASFPHYAIQQGIPYNVYGYSPYSPDYSYPTS 180

Query: 188 YYNVYGGATAQYPMYSTGPGGLMSGAA-AFYPYFQFGEGSGGGGANGFSAGSGQQGYGGQ 247
           YY+VYGGATAQYPMY TGPGG+M+GAA AFYPY QFGEG+ GG A G+++G   Q YG Q
Sbjct: 181 YYSVYGGATAQYPMYGTGPGGMMTGAATAFYPYLQFGEGN-GGAATGYASG---QSYGIQ 240

Query: 248 YPHHLFQYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGVTMAL-TTPIPHR 299
           YPHH+FQYSA INST    PQ YG  PMSL  T   L SGVT+AL   PIPHR
Sbjct: 241 YPHHMFQYSA-INSTG-GYPQQYGA-PMSLAPT-AALQSGVTVALPAPPIPHR 270

[Close]
BLAST of CmoCh01G009270 vs. TrEMBL
Match: V7ACX4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G003400g PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 9.2e-107
Identity = 211/293 (72.01%), Postives = 231/293 (78.84%), Query Frame = 1 

Query: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67
           M+P NL GQFGDTTYTKVFVGGLAWET K+TM KYF+QFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP H               
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH--------------- 120

Query: 128 GGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPTS 187
           GGGGGRN RV+  FQ+GFGG VGSAF S  TFP YA+ QGIPYN+YGYS YSPDY YPTS
Sbjct: 121 GGGGGRNLRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTS 180

Query: 188 YYNVYGGATAQYPMYSTGPGGLMSGAAAFYPYFQF-GEGSGGGG-ANGFSAGSGQQGYGG 247
           YY VYGGATAQYP+Y +GPGG+M+GAAAFYPY Q+ GEGSGGGG + G+S+G   QGYG 
Sbjct: 181 YYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSG---QGYGV 240

Query: 248 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPIPHR 299
            Y  HLFQYS   ++ A    QHY G PMSL    P L SGVTM+L  PIPHR
Sbjct: 241 NYAPHLFQYSPIASTAAGAYAQHY-GTPMSL-APSPALQSGVTMSLQAPIPHR 273

[Close]
BLAST of CmoCh01G009270 vs. TAIR10
Match: AT1G33470.1 (AT1G33470.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 240.4 bits (612), Expect = 1.5e-63
Identity = 149/272 (54.78%), Postives = 173/272 (63.60%), Query Frame = 1 

Query: 19  DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAM 78
           DTT+TKVFVGGLAWETHK ++  YF+QFGDI+EAVVITDK++GRSKGYGFVTF DPEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 79  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGGRNFRVL 138
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H               G  GGR  +V 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH---------------GHVGGRGMKVT 122

Query: 139 SCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPY-NLYGYSSYSPDYNYPT-SYYNVYGGAT 198
           S F++ F G   +A  S   F  Y     +PY N +G+SSYS DYNYPT SYYNVYGGAT
Sbjct: 123 SPFKTHF-GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGGAT 182

Query: 199 AQYPMYSTGP--GGLMSGAAAFYPYFQFGEGSGGGGANGFSAGSGQQGYGG-QYPHHLFQ 258
           AQ+PMY +GP  G   + AA FYPY QF EG+G              GY    YP+H+F 
Sbjct: 183 AQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNG-----------PVTGYAPLHYPNHMFH 237

Query: 259 YSAGINSTATTLPQHYGGPPMSLPLTPPTLPS 286
           YSA         P H G P    P   P +PS
Sbjct: 243 YSA----PGGNYPHHNGSPVSLAP--SPVIPS 237

[Close]
BLAST of CmoCh01G009270 vs. TAIR10
Match: AT1G22910.3 (AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 216.1 bits (549), Expect = 3.0e-56
Identity = 140/284 (49.30%), Postives = 171/284 (60.21%), Query Frame = 1 

Query: 18  GDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAA 77
           GDTTYTKVFVGGLAWETHK+TM K+F+QFG+ILEAVVITDKA+GRSKGYGFVTFR+ EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 78  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGGRNFRV 137
             ACVDA PVIDGRRANCNLASLG+QRSKPSTPNH              GGGG   N RV
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH--------------GGGGRINNMRV 127

Query: 138 -LSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDY-NYPTSYYNVYGGA 197
            +S  Q+GFG          P  P +  +  +P NL+GYS YSPDY ++PT+ Y +YG  
Sbjct: 128 MMSTMQTGFGP------PPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCT 187

Query: 198 T-AQYPMY---STGPGGLMSGAAAFYPYFQFGEGSGGGGANGFSAGSGQQGYGGQYPHHL 257
           +  QY +Y   ++G GGL + AA+  P++  G G GG           Q      + HHL
Sbjct: 188 SGGQYGVYGNRNSGGGGLTAAAASATPFYPCGGGHGG----------VQFSQPQPFYHHL 247

Query: 258 FQYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPI 296
             Y+          P HY  P  S+        S  T + + P+
Sbjct: 248 SSYN----------PHHYSPPTFSMQQGSRNRLSASTTSYSLPL 251

[Close]
BLAST of CmoCh01G009270 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 162.5 bits (410), Expect = 3.9e-40
Identity = 121/270 (44.81%), Postives = 143/270 (52.96%), Query Frame = 1 

Query: 13  LGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFR 72
           L   FGDTT+TKVFVGGLAWET  +T+ ++F Q+GDILEAVVITDK TGRSKGYGFVTFR
Sbjct: 14  LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFR 73

Query: 73  DPEAAMRACVDAAPVIDGRRANCNLASLGVQRSK------PSTPNHEKKKWELAGGGGGG 132
           DPEAA RACVD  P+IDGRRANCNLASLG  R        P  P   +      G     
Sbjct: 74  DPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGS---- 133

Query: 133 GGGGGGRNFRVLSCFQSGFGGNVGS-AFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYP 192
                          QS  G + GS  +H  PT   Y   QG+ Y  YG + Y PDY Y 
Sbjct: 134 --------------VQSPRGLHFGSHPYHQPPT---YNYQQGVVYP-YGVTPYGPDYMYS 193

Query: 193 TS--YYNVYGGATAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGG-GGANGFSAGSGQQG 252
            S  +Y  Y G   QY      PG + S      P +Q+G+ S    GA+G++AG   QG
Sbjct: 194 QSQGFYGPYMG--QQYLQVYGVPGAVNS------PGYQYGQLSHTIPGAHGYTAG---QG 247

Query: 253 YGGQYPHHLFQYSAGINSTATTLPQHYGGP 273
           Y     H L     G  S  + +   Y  P
Sbjct: 254 YSHPGSHVL---QLGATSPMSAIQSPYPSP 247

[Close]
BLAST of CmoCh01G009270 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-39
Identity = 119/290 (41.03%), Postives = 152/290 (52.41%), Query Frame = 1 

Query: 19  DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAM 78
           DT  TK+FVGGLAWET +DTM +YF+QFG+I+EAVVITDK TGRSKGYGFVTF++ EAAM
Sbjct: 18  DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77

Query: 79  RACVDAAPVIDGRRANCNLASLGVQRSKPST-PNHEKKKWELAGGGGGGGGGGGGRNFRV 138
           RAC +  PVIDGRRANCNLA LG Q+ +P T P H   ++   G G G            
Sbjct: 78  RACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVG------------ 137

Query: 139 LSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPTSYYN--VYGGA 198
           L      F G+  S+        ++      PY+ YG+S YS +  YP +YYN  +YGG 
Sbjct: 138 LVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYYNHHLYGG- 197

Query: 199 TAQYPMY----STGPGGLMSGAAAFYPYF-QFGEGSGGGGANGFSAGSGQQGYGGQY--- 258
             Q+  Y    S G  G+  G   FYPY+ Q+        A         QG+  QY   
Sbjct: 198 -QQFSPYMGHPSAGSTGMFHG---FYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQYTAP 257

Query: 259 -PHHLFQYSAGINSTATTLPQHYGG--PPMSLPLTPPTLPSGVTMALTTP 295
               L QY    +    +  Q +    PP      PP L    ++AL+ P
Sbjct: 258 PAPPLLQYPYLPHQPHFSSQQQFSSQQPP------PPILSLPTSLALSLP 284

[Close]
BLAST of CmoCh01G009270 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 145.2 bits (365), Expect = 6.4e-35
Identity = 116/285 (40.70%), Postives = 145/285 (50.88%), Query Frame = 1 

Query: 13  LGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFR 72
           L   FGDTT+TKVFVGGLAWET  +T+ ++F+Q+G+ILEAVVI DK TGRSKGYGFVTFR
Sbjct: 14  LNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFR 73

Query: 73  DPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGG 132
           DPEAA RAC D  P+IDGRRANCNLASLG  R +P  P      + +     G       
Sbjct: 74  DPEAARRACADPTPIIDGRRANCNLASLG--RPRPPLP------YAVIPNMPG------- 133

Query: 133 RNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNL-------YGYSSYSPDYNYP 192
              R  S +     G  GS   +      Y   Q +PYN        YG ++Y P+Y Y 
Sbjct: 134 -RLRPASPYIGNVQGPRGSLIGN------YPYQQPLPYNYQQGVVYPYGVTAYGPEYMYS 193

Query: 193 TS--YYNVYGGATAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGG-GGANGFSAGSGQQG 252
            S   Y+ Y G   QY      PG + S      P +Q+G+ S      +G++A  G   
Sbjct: 194 QSQGLYSPYMG--QQYLQVYGVPGAVNS------PVYQYGQLSQTIPNGHGYTAVQGYSV 253

Query: 253 YGGQYPHHLFQYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGV 288
            G     H+ Q      ST TT          S+P      PSG+
Sbjct: 254 PGS----HILQLGGPTVSTMTT---------SSMPALQAPYPSGI 255

[Close]
BLAST of CmoCh01G009270 vs. NCBI nr
Match: gi|659119151|ref|XP_008459503.1| (PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo])

HSP 1 Score: 475.7 bits (1223), Expect = 5.9e-131
Identity = 248/298 (83.22%), Postives = 257/298 (86.24%), Query Frame = 1 

Query: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67
           M+P+NL  QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127
           FVTFR+P+AAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP HEKKKWEL       G
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------G 120

Query: 128 GGGGGRNFRVLSC-FQSGFGGNVGSAFHS-TPTFPRYAVHQGIPYNLYGYSSYSPDYNYP 187
           GGGG  NFRVLS  FQSGFGGNVGSAFHS T TFP YA+ QGIPYNLYGYSSYSPDY YP
Sbjct: 121 GGGGRNNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYP 180

Query: 188 TSYYNVYGGATAQYPMYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGANGFSAGSGQQ 247
           TSYYNVYGGATAQYPMY TGPGG++SG    AAAFYPYFQFGEGSGGG       GSGQQ
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG-------GSGQQ 240

Query: 248 GYGGQYPHHLFQYSAGINST-ATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPIPHR 299
           GYG QYPHHLFQYSA INST ATT PQHY  PPMSLP TPPTLPSGVTMAL  PIPHR
Sbjct: 241 GYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285

[Close]
BLAST of CmoCh01G009270 vs. NCBI nr
Match: gi|659119155|ref|XP_008459505.1| (PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo])

HSP 1 Score: 456.4 bits (1173), Expect = 3.7e-125
Identity = 241/298 (80.87%), Postives = 250/298 (83.89%), Query Frame = 1 

Query: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67
           M+P+NL  QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127
           FVTFR+P+AAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP H              G
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH--------------G 120

Query: 128 GGGGGRNFRVLSC-FQSGFGGNVGSAFHS-TPTFPRYAVHQGIPYNLYGYSSYSPDYNYP 187
           GGGG  NFRVLS  FQSGFGGNVGSAFHS T TFP YA+ QGIPYNLYGYSSYSPDY YP
Sbjct: 121 GGGGRNNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYP 180

Query: 188 TSYYNVYGGATAQYPMYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGANGFSAGSGQQ 247
           TSYYNVYGGATAQYPMY TGPGG++SG    AAAFYPYFQFGEGSGGG       GSGQQ
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG-------GSGQQ 240

Query: 248 GYGGQYPHHLFQYSAGINST-ATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPIPHR 299
           GYG QYPHHLFQYSA INST ATT PQHY  PPMSLP TPPTLPSGVTMAL  PIPHR
Sbjct: 241 GYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 277

[Close]
BLAST of CmoCh01G009270 vs. NCBI nr
Match: gi|659119153|ref|XP_008459504.1| (PREDICTED: RNA-binding protein 24 isoform X2 [Cucumis melo])

HSP 1 Score: 454.5 bits (1168), Expect = 1.4e-124
Identity = 237/285 (83.16%), Postives = 246/285 (86.32%), Query Frame = 1 

Query: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67
           M+P+NL  QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127
           FVTFR+P+AAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP HEKKKWEL GGGGG  
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 128 GGGGGRNFRVLSC-FQSGFGGNVGSAFHS-TPTFPRYAVHQGIPYNLYGYSSYSPDYNYP 187
                 NFRVLS  FQSGFGGNVGSAFHS T TFP YA+ QGIPYNLYGYSSYSPDY YP
Sbjct: 121 ------NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYP 180

Query: 188 TSYYNVYGGATAQYPMYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGANGFSAGSGQQ 247
           TSYYNVYGGATAQYPMY TGPGG++SG    AAAFYPYFQFGEGSGGG       GSGQQ
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG-------GSGQQ 240

Query: 248 GYGGQYPHHLFQYSAGINST-ATTLPQHYGGPPMSLPLTPPTLPS 286
           GYG QYPHHLFQYSA INST ATT PQHY  PPMSLP TPPTLPS
Sbjct: 241 GYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS 272

[Close]
BLAST of CmoCh01G009270 vs. NCBI nr
Match: gi|659119157|ref|XP_008459506.1| (PREDICTED: RNA-binding protein 24 isoform X4 [Cucumis melo])

HSP 1 Score: 434.9 bits (1117), Expect = 1.2e-118
Identity = 230/285 (80.70%), Postives = 239/285 (83.86%), Query Frame = 1 

Query: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67
           M+P+NL  QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127
           FVTFR+P+AAMRACVDA+PVIDGRRANCNLASLGVQRSKPSTP H              G
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH--------------G 120

Query: 128 GGGGGRNFRVLSC-FQSGFGGNVGSAFHS-TPTFPRYAVHQGIPYNLYGYSSYSPDYNYP 187
           GGGG  NFRVLS  FQSGFGGNVGSAFHS T TFP YA+ QGIPYNLYGYSSYSPDY YP
Sbjct: 121 GGGGRNNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYP 180

Query: 188 TSYYNVYGGATAQYPMYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGANGFSAGSGQQ 247
           TSYYNVYGGATAQYPMY TGPGG++SG    AAAFYPYFQFGEGSGGG       GSGQQ
Sbjct: 181 TSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGG-------GSGQQ 240

Query: 248 GYGGQYPHHLFQYSAGINST-ATTLPQHYGGPPMSLPLTPPTLPS 286
           GYG QYPHHLFQYSA INST ATT PQHY  PPMSLP TPPTLPS
Sbjct: 241 GYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPS 264

[Close]
BLAST of CmoCh01G009270 vs. NCBI nr
Match: gi|1009173878|ref|XP_015868052.1| (PREDICTED: RNA-binding protein 24-A-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 402.5 bits (1033), Expect = 6.3e-109
Identity = 216/295 (73.22%), Postives = 237/295 (80.34%), Query Frame = 1 

Query: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67
           M+PANL GQFGDTTYTKVFVGGLAWET K+TM KYF+QFG+ILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127
           FVTFR+PEAAMRACVDAAP+IDGRRANCNLASLGVQRSKPSTP H               
Sbjct: 61  FVTFREPEAAMRACVDAAPMIDGRRANCNLASLGVQRSKPSTPKH--------------- 120

Query: 128 GGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPTS 187
            GG GRNFRV+  FQ+  GG VG+AF S  TFP YA+ QGIPYN+YGYS YSPDY YPTS
Sbjct: 121 -GGAGRNFRVMGSFQT-VGGGVGTAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTS 180

Query: 188 YYNVYGGATAQYPMYSTGPGGLMSG---AAAFYPYFQFGEGSGGGGANGFSAGSGQQGYG 247
           YY +YGGAT+QYPMY TGPGG+++G   AAAFYPY QFGEGSGGGGA G+S+G   QGYG
Sbjct: 181 YYGLYGGATSQYPMYGTGPGGMVTGAAAAAAFYPYLQFGEGSGGGGATGYSSG---QGYG 240

Query: 248 GQYPHHLFQYSAGINSTATTLPQHYGGPPMSLPLTP-PTLPSGVTMALTTPIPHR 299
            QYPHHLFQYSA INS+A   PQHYG P   + L+P P L SGVTMAL  PIPHR
Sbjct: 241 IQYPHHLFQYSA-INSSA-AYPQHYGAP---MSLSPSPALQSGVTMALHAPIPHR 270

The following BLAST results are available for this feature:
BLAST of CmoCh01G009270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARP1_ARATH1.8e-2636.98Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1[more]
RBM38_MOUSE3.3e-2557.73RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2[more]
RBM38_HUMAN7.4e-2557.89RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2[more]
RB24B_XENLA9.7e-2563.53RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1[more]
RB24A_XENLA9.7e-2563.53RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1[more]
BLAST of CmoCh01G009270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUN6_CUCSA9.8e-12583.16Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647270 PE=4 SV=1[more]
A0A0L9V9I9_PHAAN1.4e-10772.35Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g214100 PE=4 SV=1[more]
A0A0S3SEZ8_PHAAN1.4e-10772.35Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G269300 PE=... [more]
A0A067KP04_JATCU1.9e-10774.06Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07989 PE=4 SV=1[more]
V7ACX4_PHAVU9.2e-10772.01Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G003400g PE=4 SV=1[more]
BLAST of CmoCh01G009270 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G33470.11.5e-6354.78 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G22910.33.0e-5649.30 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G20880.13.9e-4044.81 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G46780.11.5e-3941.03 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G76460.16.4e-3540.70 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmoCh01G009270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119151|ref|XP_008459503.1|5.9e-13183.22PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo][more]
gi|659119155|ref|XP_008459505.1|3.7e-12580.87PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo][more]
gi|659119153|ref|XP_008459504.1|1.4e-12483.16PREDICTED: RNA-binding protein 24 isoform X2 [Cucumis melo][more]
gi|659119157|ref|XP_008459506.1|1.2e-11880.70PREDICTED: RNA-binding protein 24 isoform X4 [Cucumis melo][more]
gi|1009173878|ref|XP_015868052.1|6.3e-10973.22PREDICTED: RNA-binding protein 24-A-like isoform X1 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G009270.1CmoCh01G009270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 25..80
score: 1.5
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 24..96
score: 3.8
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 23..107
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 19..129
score: 1.0
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 19..132
score: 1.61
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 19..104
score: 1.0
NoneNo IPR availablePANTHERPTHR24012:SF421SUBFAMILY NOT NAMEDcoord: 19..104
score: 1.0