CmoCh06G010710 (gene) Cucurbita moschata (Rifu)

NameCmoCh06G010710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionArabinogalactan protein 20
LocationCmo_Chr06 : 8296612 .. 8297255 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATCATTTCTTCCACAGATTTGTTTCTTTGGAGAGGGACAGCAACAATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGTAATCTACGCATCTGATTTCTAAGCTCCATCAGTTTTTGTGTCTGCATTGTTCTTTTTGTTGATTGATGATGATGATGATGAATGTAGGTTTTTCAAATTTTTGATTTGGAAGTGATTTGTTGACAATTTTGTGTAAAATCAGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAAATGAGCTCTAGGATTGTAGCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGAAGTAAGGCCAACTTTCTTGCTCTCGTTGTGATAAATGTAGGGTTGAAGAGGAATTTTCATGTTGAGTTTGCCAGATTTTGATCCATTCTTTTATTTATTGATTGTTTAATCCATTACTTTCAATTTTGT

mRNA sequence

TTCATCATTTCTTCCACAGATTTGTTTCTTTGGAGAGGGACAGCAACAATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAAATGAGCTCTAGGATTGTAGCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGAAGTAAGGCCAACTTTCTTGCTCTCGTTGTGATAAATGTAGGGTTGAAGAGGAATTTTCATGTTGAGTTTGCCAGATTTTGATCCATTCTTTTATTTATTGATTGTTTAATCCATTACTTTCAATTTTGT

Coding sequence (CDS)

ATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAAATGA
BLAST of CmoCh06G010710 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-14
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1

Query: 20 FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SS 79
          FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SS
Sbjct: 13 FAFVFAVISPFAGAQSL--APAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSS 72

Query: 80 YQFF 82
          Y FF
Sbjct: 73 YTFF 74

BLAST of CmoCh06G010710 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-14
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1

Query: 17 FTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA- 76
          F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA 
Sbjct: 10 FALFSFVFAVILSLAGAQSL--APAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 69

Query: 77 SSYQFF 82
          SSY FF
Sbjct: 70 SSYSFF 73

BLAST of CmoCh06G010710 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1

Query: 20 FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 72
          F +I  IL P+  +HSS  +PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 14 FVIISVILLPIAQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of CmoCh06G010710 vs. TrEMBL
Match: A0A0A0L7A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120410 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-20
Identity = 60/78 (76.92%), Postives = 64/78 (82.05%), Query Frame = 1

Query: 5  SSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMAL 64
          S +ST  AF   FT F+LIFFILSPLV A     APAPAP+SDGTSIDQGIAYVLML+AL
Sbjct: 3  SFNSTSRAFKALFTFFSLIFFILSPLVDA---TPAPAPAPSSDGTSIDQGIAYVLMLLAL 62

Query: 65 VLTYLIHPLDASSYQFFL 83
          VLTYLIHPLDASSY FFL
Sbjct: 63 VLTYLIHPLDASSYNFFL 77

BLAST of CmoCh06G010710 vs. TrEMBL
Match: A0A061DUP4_THECC (Arabinogalactan protein 20 OS=Theobroma cacao GN=TCM_005200 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.2e-17
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = 1

Query: 12 AFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 71
          AF G    FAL+F I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIH
Sbjct: 8  AFVGVMAIFALVFAIVSPFVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIH 67

Query: 72 PLDASSYQFF 82
          PLDASSY FF
Sbjct: 68 PLDASSYSFF 75

BLAST of CmoCh06G010710 vs. TrEMBL
Match: A0A0D2TCU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105900 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-16
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 1

Query: 18 TCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 77
          T FAL+F I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALVFAIVSPNVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 78 YQFF 82
          Y FF
Sbjct: 74 YTFF 75

BLAST of CmoCh06G010710 vs. TrEMBL
Match: A0A0B0PYH7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05303 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.1e-16
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 1

Query: 13 FSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHP 72
          F G     AL+F I+SP V A   ASAPAP+P SDGTSIDQGIAYVLML+AL+LTYLIHP
Sbjct: 9  FMGVMAILALVFAIVSPYVEAQ--ASAPAPSPTSDGTSIDQGIAYVLMLVALMLTYLIHP 68

Query: 73 LDASSYQFF 82
          LDASSY FF
Sbjct: 69 LDASSYTFF 75

BLAST of CmoCh06G010710 vs. TrEMBL
Match: A0A0B0PFR1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_09698 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.9e-16
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1

Query: 18 TCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 77
          T FALIF I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALIFAIVSPKVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 78 YQF 81
          Y F
Sbjct: 74 YTF 74

BLAST of CmoCh06G010710 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 79.7 bits (195), Expect = 9.2e-16
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1

Query: 20 FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SS 79
          FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SS
Sbjct: 13 FAFVFAVISPFAGAQSL--APAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSS 72

Query: 80 YQFF 82
          Y FF
Sbjct: 73 YTFF 74

BLAST of CmoCh06G010710 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 77.8 bits (190), Expect = 3.5e-15
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1

Query: 17 FTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA- 76
          F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA 
Sbjct: 10 FALFSFVFAVILSLAGAQSL--APAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 69

Query: 77 SSYQFF 82
          SSY FF
Sbjct: 70 SSYSFF 73

BLAST of CmoCh06G010710 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 73.6 bits (179), Expect = 6.6e-14
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1

Query: 13 FSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 72
          F G  T  ++IF IL P+ HA S+  APAPAP SDGT+IDQGIAYVLML+ALVLTYLIH
Sbjct: 7  FFGVSTIVSIIFAILLPMAHAQSA--APAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

BLAST of CmoCh06G010710 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1

Query: 20 FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 72
          F +I  IL P+  +HSS  +PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 14 FVIISVILLPIAQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of CmoCh06G010710 vs. NCBI nr
Match: gi|449432096|ref|XP_004133836.1| (PREDICTED: arabinogalactan peptide 20 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-20
Identity = 60/78 (76.92%), Postives = 64/78 (82.05%), Query Frame = 1

Query: 5  SSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMAL 64
          S +ST  AF   FT F+LIFFILSPLV A     APAPAP+SDGTSIDQGIAYVLML+AL
Sbjct: 3  SFNSTSRAFKALFTFFSLIFFILSPLVDA---TPAPAPAPSSDGTSIDQGIAYVLMLLAL 62

Query: 65 VLTYLIHPLDASSYQFFL 83
          VLTYLIHPLDASSY FFL
Sbjct: 63 VLTYLIHPLDASSYNFFL 77

BLAST of CmoCh06G010710 vs. NCBI nr
Match: gi|590721494|ref|XP_007051629.1| (Arabinogalactan protein 20 [Theobroma cacao])

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-17
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = 1

Query: 12 AFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 71
          AF G    FAL+F I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIH
Sbjct: 8  AFVGVMAIFALVFAIVSPFVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIH 67

Query: 72 PLDASSYQFF 82
          PLDASSY FF
Sbjct: 68 PLDASSYSFF 75

BLAST of CmoCh06G010710 vs. NCBI nr
Match: gi|823187080|ref|XP_012490068.1| (PREDICTED: arabinogalactan peptide 20-like [Gossypium raimondii])

HSP 1 Score: 92.0 bits (227), Expect = 5.1e-16
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 1

Query: 18 TCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 77
          T FAL+F I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALVFAIVSPNVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 78 YQFF 82
          Y FF
Sbjct: 74 YTFF 75

BLAST of CmoCh06G010710 vs. NCBI nr
Match: gi|728850111|gb|KHG29554.1| (hypothetical protein F383_05303 [Gossypium arboreum])

HSP 1 Score: 91.3 bits (225), Expect = 8.7e-16
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 1

Query: 13 FSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHP 72
          F G     AL+F I+SP V A   ASAPAP+P SDGTSIDQGIAYVLML+AL+LTYLIHP
Sbjct: 9  FMGVMAILALVFAIVSPYVEAQ--ASAPAPSPTSDGTSIDQGIAYVLMLVALMLTYLIHP 68

Query: 73 LDASSYQFF 82
          LDASSY FF
Sbjct: 69 LDASSYTFF 75

BLAST of CmoCh06G010710 vs. NCBI nr
Match: gi|728844337|gb|KHG23780.1| (hypothetical protein F383_09698 [Gossypium arboreum])

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1

Query: 18 TCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 77
          T FALIF I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALIFAIVSPKVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 78 YQF 81
          Y F
Sbjct: 74 YTF 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGP20_ARATH1.6e-1468.75Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1[more]
AGP16_ARATH6.2e-1466.67Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1[more]
AGP22_ARATH1.9e-1067.31Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L7A0_CUCSA1.8e-2076.92Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120410 PE=4 SV=1[more]
A0A061DUP4_THECC3.2e-1774.29Arabinogalactan protein 20 OS=Theobroma cacao GN=TCM_005200 PE=4 SV=1[more]
A0A0D2TCU0_GOSRA3.6e-1678.13Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105900 PE=4 SV=1[more]
A0A0B0PYH7_GOSAR6.1e-1672.46Uncharacterized protein OS=Gossypium arboreum GN=F383_05303 PE=4 SV=1[more]
A0A0B0PFR1_GOSAR7.9e-1679.37Uncharacterized protein OS=Gossypium arboreum GN=F383_09698 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G61640.19.2e-1668.75 arabinogalactan protein 20[more]
AT2G46330.13.5e-1566.67 arabinogalactan protein 16[more]
AT5G24105.16.6e-1469.49 arabinogalactan protein 41[more]
AT5G53250.11.1e-1167.31 arabinogalactan protein 22[more]
Match NameE-valueIdentityDescription
gi|449432096|ref|XP_004133836.1|2.6e-2076.92PREDICTED: arabinogalactan peptide 20 [Cucumis sativus][more]
gi|590721494|ref|XP_007051629.1|4.6e-1774.29Arabinogalactan protein 20 [Theobroma cacao][more]
gi|823187080|ref|XP_012490068.1|5.1e-1678.13PREDICTED: arabinogalactan peptide 20-like [Gossypium raimondii][more]
gi|728850111|gb|KHG29554.1|8.7e-1672.46hypothetical protein F383_05303 [Gossypium arboreum][more]
gi|728844337|gb|KHG23780.1|1.1e-1579.37hypothetical protein F383_09698 [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G010710.1CmoCh06G010710.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan peptide, AGPPFAMPF06376DUF1070coord: 39..71
score: 8.3
NoneNo IPR availablePANTHERPTHR33374FAMILY NOT NAMEDcoord: 20..81
score: 2.7
NoneNo IPR availablePANTHERPTHR33374:SF6ARABINOGALACTAN PEPTIDE 16-RELATEDcoord: 20..81
score: 2.7

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh06G010710CmoCh14G021420Cucurbita moschata (Rifu)cmocmoB224
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G010710Cucumber (Chinese Long) v3cmocucB0976
CmoCh06G010710Watermelon (97103) v2cmowmbB810
CmoCh06G010710Watermelon (97103) v2cmowmbB835
CmoCh06G010710Wax gourdcmowgoB1002
CmoCh06G010710Cucumber (Gy14) v1cgycmoB0718
CmoCh06G010710Cucurbita maxima (Rimu)cmacmoB271
CmoCh06G010710Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G010710Wild cucumber (PI 183967)cmocpiB814
CmoCh06G010710Cucumber (Chinese Long) v2cmocuB806
CmoCh06G010710Melon (DHL92) v3.6.1cmomedB836