CmaCh00G003360 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G003360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Arabinogalactan protein 20
Location	Cma_Chr00 : 27484463 .. 27484930 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCTCTCTCTTTCTCTCTCTTCTTCATCATTTCTTCCACAGATTTGTTTCTTTGGAGAGGGACAGCAACAATGGCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATTGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGTAATCTACGCATCTGATTTCTAAACTCCATCAGCTTTTGTGTCTGCTTTGTCCTTTTTGTTGATTGATGATGATGATGATGATGAATGTAGGTCTTTTCAAATTTTTTATTTGGAAGTGATTTGTTGACAATTTTGTGTAAAATCAGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGA

mRNA sequence

GATCTCTCTCTTTCTCTCTCTTCTTCATCATTTCTTCCACAGATTTGTTTCTTTGGAGAGGGACAGCAACAATGGCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATTGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGA

Coding sequence (CDS)

ATGGCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATTGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGA

Protein sequence

MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

Homology

[Close]

BLAST of CmaCh00G003360 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.5e-15
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 16 FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA- 75
          F  F+ +F ++L L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA 
Sbjct: 10 FALFSFVFAVILSLAGAQSL--APAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 69

Query: 76 SSYQFF 81
          SSY FF
Sbjct: 70 SSYSFF 73

[Close]

BLAST of CmaCh00G003360 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.0e-14
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1


Query: 19 FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SS 78
          FA +F ++ P   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SS
Sbjct: 13 FAFVFAVISPFAGAQSL--APAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSS 72

Query: 79 YQFF 81
          Y FF
Sbjct: 73 YTFF 74

[Close]

BLAST of CmaCh00G003360 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.9e-11
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1


Query: 19 FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 71
          F +I  ILLP+  +HSS  +PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 14 FVIISVILLPIAQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of CmaCh00G003360 vs. TrEMBL
Match: A0A0A0L7A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120410 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.1e-21
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 4  SSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMAL 63
          S +ST  AF   FT F+LIFFIL PLV A     APAPAP+SDGTSIDQGIAYVLML+AL
Sbjct: 3  SFNSTSRAFKALFTFFSLIFFILSPLVDA---TPAPAPAPSSDGTSIDQGIAYVLMLLAL 62

Query: 64 VLTYLIHPLDASSYQFFLN 83
          VLTYLIHPLDASSY FFLN
Sbjct: 63 VLTYLIHPLDASSYNFFLN 78

[Close]

BLAST of CmaCh00G003360 vs. TrEMBL
Match: A0A061DUP4_THECC (Arabinogalactan protein 20 OS=Theobroma cacao GN=TCM_005200 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 1


Query: 11 AFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 70
          AF G    FAL+F I+ P V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIH
Sbjct: 8  AFVGVMAIFALVFAIVSPFVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIH 67

Query: 71 PLDASSYQFF 81
          PLDASSY FF
Sbjct: 68 PLDASSYSFF 75

[Close]

BLAST of CmaCh00G003360 vs. TrEMBL
Match: A0A0D2TCU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105900 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-15
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1


Query: 17 TCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 76
          T FAL+F I+ P V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALVFAIVSPNVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 77 YQFF 81
          Y FF
Sbjct: 74 YTFF 75

[Close]

BLAST of CmaCh00G003360 vs. TrEMBL
Match: A0A0B0PYH7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05303 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-15
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 12 FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHP 71
          F G     AL+F I+ P V A   ASAPAP+P SDGTSIDQGIAYVLML+AL+LTYLIHP
Sbjct: 9  FMGVMAILALVFAIVSPYVEAQ--ASAPAPSPTSDGTSIDQGIAYVLMLVALMLTYLIHP 68

Query: 72 LDASSYQFF 81
          LDASSY FF
Sbjct: 69 LDASSYTFF 75

[Close]

BLAST of CmaCh00G003360 vs. TrEMBL
Match: A0A0B0PFR1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_09698 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-15
Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 17 TCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 76
          T FALIF I+ P V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALIFAIVSPKVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 77 YQF 80
          Y F
Sbjct: 74 YTF 74

[Close]

BLAST of CmaCh00G003360 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 80.5 bits (197), Expect = 5.4e-16
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 16 FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA- 75
          F  F+ +F ++L L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA 
Sbjct: 10 FALFSFVFAVILSLAGAQSL--APAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 69

Query: 76 SSYQFF 81
          SSY FF
Sbjct: 70 SSYSFF 73

[Close]

BLAST of CmaCh00G003360 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 77.4 bits (189), Expect = 4.5e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1


Query: 19 FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SS 78
          FA +F ++ P   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SS
Sbjct: 13 FAFVFAVISPFAGAQSL--APAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSS 72

Query: 79 YQFF 81
          Y FF
Sbjct: 73 YTFF 74

[Close]

BLAST of CmaCh00G003360 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-14
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 12 FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 71
          F G  T  ++IF ILLP+ HA S+  APAPAP SDGT+IDQGIAYVLML+ALVLTYLIH
Sbjct: 7  FFGVSTIVSIIFAILLPMAHAQSA--APAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of CmaCh00G003360 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-12
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1


Query: 19 FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 71
          F +I  ILLP+  +HSS  +PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 14 FVIISVILLPIAQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of CmaCh00G003360 vs. NCBI nr
Match: gi|449432096|ref|XP_004133836.1| (PREDICTED: arabinogalactan peptide 20 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 4  SSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMAL 63
          S +ST  AF   FT F+LIFFIL PLV A     APAPAP+SDGTSIDQGIAYVLML+AL
Sbjct: 3  SFNSTSRAFKALFTFFSLIFFILSPLVDA---TPAPAPAPSSDGTSIDQGIAYVLMLLAL 62

Query: 64 VLTYLIHPLDASSYQFFLN 83
          VLTYLIHPLDASSY FFLN
Sbjct: 63 VLTYLIHPLDASSYNFFLN 78

[Close]

BLAST of CmaCh00G003360 vs. NCBI nr
Match: gi|590721494|ref|XP_007051629.1| (Arabinogalactan protein 20 [Theobroma cacao])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 1


Query: 11 AFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 70
          AF G    FAL+F I+ P V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIH
Sbjct: 8  AFVGVMAIFALVFAIVSPFVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIH 67

Query: 71 PLDASSYQFF 81
          PLDASSY FF
Sbjct: 68 PLDASSYSFF 75

[Close]

BLAST of CmaCh00G003360 vs. NCBI nr
Match: gi|823187080|ref|XP_012490068.1| (PREDICTED: arabinogalactan peptide 20-like [Gossypium raimondii])

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-15
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1


Query: 17 TCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 76
          T FAL+F I+ P V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALVFAIVSPNVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 77 YQFF 81
          Y FF
Sbjct: 74 YTFF 75

[Close]

BLAST of CmaCh00G003360 vs. NCBI nr
Match: gi|728850111|gb|KHG29554.1| (hypothetical protein F383_05303 [Gossypium arboreum])

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-15
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 12 FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHP 71
          F G     AL+F I+ P V A   ASAPAP+P SDGTSIDQGIAYVLML+AL+LTYLIHP
Sbjct: 9  FMGVMAILALVFAIVSPYVEAQ--ASAPAPSPTSDGTSIDQGIAYVLMLVALMLTYLIHP 68

Query: 72 LDASSYQFF 81
          LDASSY FF
Sbjct: 69 LDASSYTFF 75

[Close]

BLAST of CmaCh00G003360 vs. NCBI nr
Match: gi|720033434|ref|XP_010266430.1| (PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera])

HSP 1 Score: 89.0 bits (219), Expect = 4.3e-15
Identity = 50/67 (74.63%), Postives = 52/67 (77.61%), Query Frame = 1


Query: 14 GFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLD 73
          G     ALIF + LP V A S   APAPAP SDGTSIDQGIAYVLML+ALVLTYLIHPLD
Sbjct: 9  GVVAIVALIFAVALPAVQAQSV--APAPAPTSDGTSIDQGIAYVLMLVALVLTYLIHPLD 68

Query: 74 ASSYQFF 81
          ASSY FF
Sbjct: 69 ASSYNFF 73

The following BLAST results are available for this feature:

BLAST of CmaCh00G003360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP16_ARATH	9.5e-15	68.18	Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1	[more]
AGP20_ARATH	8.0e-14	67.19	Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1	[more]
AGP22_ARATH	2.9e-11	69.23	Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1	[more]

BLAST of CmaCh00G003360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7A0_CUCSA	8.1e-21	75.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120410 PE=4 SV=1	[more]
A0A061DUP4_THECC	1.2e-16	72.86	Arabinogalactan protein 20 OS=Theobroma cacao GN=TCM_005200 PE=4 SV=1	[more]
A0A0D2TCU0_GOSRA	1.3e-15	76.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105900 PE=4 SV=1	[more]
A0A0B0PYH7_GOSAR	2.3e-15	71.01	Uncharacterized protein OS=Gossypium arboreum GN=F383_05303 PE=4 SV=1	[more]
A0A0B0PFR1_GOSAR	3.0e-15	77.78	Uncharacterized protein OS=Gossypium arboreum GN=F383_09698 PE=4 SV=1	[more]

BLAST of CmaCh00G003360 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46330.1	5.4e-16	68.18	arabinogalactan protein 16	[more]
AT3G61640.1	4.5e-15	67.19	arabinogalactan protein 20	[more]
AT5G24105.1	1.3e-14	71.19	arabinogalactan protein 41	[more]
AT5G53250.1	1.6e-12	69.23	arabinogalactan protein 22	[more]

BLAST of CmaCh00G003360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432096\|ref\|XP_004133836.1\|	1.2e-20	75.95	PREDICTED: arabinogalactan peptide 20 [Cucumis sativus]	[more]
gi\|590721494\|ref\|XP_007051629.1\|	1.7e-16	72.86	Arabinogalactan protein 20 [Theobroma cacao]	[more]
gi\|823187080\|ref\|XP_012490068.1\|	1.9e-15	76.56	PREDICTED: arabinogalactan peptide 20-like [Gossypium raimondii]	[more]
gi\|728850111\|gb\|KHG29554.1\|	3.3e-15	71.01	hypothetical protein F383_05303 [Gossypium arboreum]	[more]
gi\|720033434\|ref\|XP_010266430.1\|	4.3e-15	74.63	PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009424	AGP16/20/22/41

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G003360.1	CmaCh00G003360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan peptide, AGP	PFAM	PF06376	DUF1070	coord: 38..70 score: 8.1
None	No IPR available	PANTHER	PTHR33374	FAMILY NOT NAMED	coord: 1..80 score: 2.4
None	No IPR available	PANTHER	PTHR33374:SF6	ARABINOGALACTAN PEPTIDE 16-RELATED	coord: 1..80 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh00G003360	Cla021191	Watermelon (97103) v1	cmawmB000
CmaCh00G003360	MELO3C006062	Melon (DHL92) v3.5.1	cmameB000
CmaCh00G003360	ClCG05G001090	Watermelon (Charleston Gray)	cmawcgB000
CmaCh00G003360	CmoCh06G010710	Cucurbita moschata (Rifu)	cmacmoB015
CmaCh00G003360	CmoCh14G021420	Cucurbita moschata (Rifu)	cmacmoB008
CmaCh00G003360	Lsi05G020890	Bottle gourd (USVL1VR-Ls)	cmalsiB004
CmaCh00G003360	Cp4.1LG08g01130	Cucurbita pepo (Zucchini)	cmacpeB016
CmaCh00G003360	Cp4.1LG03g16390	Cucurbita pepo (Zucchini)	cmacpeB005
CmaCh00G003360	MELO3C006062.2	Melon (DHL92) v3.6.1	cmamedB000
CmaCh00G003360	CsaV3_3G008420	Cucumber (Chinese Long) v3	cmacucB0000
CmaCh00G003360	Cla97C05G081390	Watermelon (97103) v2	cmawmbB000
CmaCh00G003360	Bhi01G000308	Wax gourd	cmawgoB0007
CmaCh00G003360	CsGy3G008420	Cucumber (Gy14) v2	cgybcmaB273
CmaCh00G003360	Carg20869	Silver-seed gourd	carcmaB1372
CmaCh00G003360	Carg20964	Silver-seed gourd	carcmaB0682

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh00G003360	CmaCh14G020830	Cucurbita maxima (Rimu)	cmacmaB011
CmaCh00G003360	CmaCh06G010330	Cucurbita maxima (Rimu)	cmacmaB026

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G003360	Cucumber (Gy14) v1	cgycmaB0705
CmaCh00G003360	Wild cucumber (PI 183967)	cmacpiB000
CmaCh00G003360	Cucumber (Chinese Long) v2	cmacuB001