Carg20869 (gene) Silver-seed gourd

NameCarg20869
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionArabinogalactan peptide
LocationCucurbita_argyrosperma_scaffold_141 : 36853 .. 37449 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTGTGCTCTGTTTCTATAAAACCAAATCCCCACATTATCCTCCGATCTCTCTTTCTCTCTCTTCTTCATCATTTCTTCCACAGATCTGTTTCTTTGGAGAGGGACAGCAACAATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTAGCGACGGTAATCTACGCATCTGATTTCTAAGCTCCATCAGTTTTTGTGTCTGCATTGTCCTTTTTGTTGTTTGATGATGATGATGATGATGAATGTAGGTTTTTCAAATTTTTGATTTGGAAGTGATTTGTTGACAATTTTGTGTAAAATCAGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGAGTTCTAGGATTGTAGCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGAAGTAAGGCCAACTTTCTT

mRNA sequence

TCTCTGTGCTCTGTTTCTATAAAACCAAATCCCCACATTATCCTCCGATCTCTCTTTCTCTCTCTTCTTCATCATTTCTTCCACAGATCTGTTTCTTTGGAGAGGGACAGCAACAATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGAGTTCTAGGATTGTAGCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGAAGTAAGGCCAACTTTCTT

Coding sequence (CDS)

ATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGA

Protein sequence

MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
BLAST of Carg20869 vs. NCBI nr
Match: XP_022934029.1 (arabinogalactan peptide 20-like [Cucurbita moschata])

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 74/82 (90.24%), Postives = 74/82 (90.24%), Query Frame = 0

Query: 1  MASSSSDSTPTAFSGFFTCFALIFFILSPLVH--AHXXXXXXXXXSDGTSIDQGIAYVLM 60
          MASSSSDSTPTAFSGFFTCFALIFFILSPLVH    XXXXXXXXX    SIDQGIAYVLM
Sbjct: 1  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHXXXXXXXXXXXXXXXXXSIDQGIAYVLM 60

Query: 61 LMALVLTYLIHPLDASSYQFFL 81
          LMALVLTYLIHPLDASSYQFFL
Sbjct: 61 LMALVLTYLIHPLDASSYQFFL 82

BLAST of Carg20869 vs. NCBI nr
Match: XP_023538848.1 (arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.8 bits (281), Expect = 5.3e-22
Identity = 72/81 (88.89%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 3  SSSSDSTPTAFSGFFTCFALIFFILSPLVH--AHXXXXXXXXXSDGTSIDQGIAYVLMLM 62
          +SSSDSTPTAFSGFFTCFALIFFILSPLVH    XXXXXXXXX    SIDQGIAYVLMLM
Sbjct: 2  ASSSDSTPTAFSGFFTCFALIFFILSPLVHXXXXXXXXXXXXXXXXXSIDQGIAYVLMLM 61

Query: 63 ALVLTYLIHPLDASSYQFFLN 82
          ALVLTYLIHPLDASSYQFFLN
Sbjct: 62 ALVLTYLIHPLDASSYQFFLN 82

BLAST of Carg20869 vs. NCBI nr
Match: XP_022974647.1 (arabinogalactan peptide 16-like [Cucurbita maxima] >XP_022975026.1 arabinogalactan peptide 16-like [Cucurbita maxima])

HSP 1 Score: 103.2 bits (256), Expect = 4.2e-19
Identity = 68/81 (83.95%), Postives = 69/81 (85.19%), Query Frame = 0

Query: 3  SSSSDSTPTAFSGFFTCFALIFFILSP--LVHAHXXXXXXXXXSDGTSIDQGIAYVLMLM 62
          +SSSDSTPTAFSGFFTCFALIFFIL P       XXXXXXXXX    SIDQGIAYVLMLM
Sbjct: 2  ASSSDSTPTAFSGFFTCFALIFFILLPXXXXXXXXXXXXXXXXXXXXSIDQGIAYVLMLM 61

Query: 63 ALVLTYLIHPLDASSYQFFLN 82
          ALVLTYLIHPLDASSYQFFLN
Sbjct: 62 ALVLTYLIHPLDASSYQFFLN 82

BLAST of Carg20869 vs. NCBI nr
Match: XP_023528757.1 (arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.8 bits (247), Expect = 4.6e-18
Identity = 63/80 (78.75%), Postives = 67/80 (83.75%), Query Frame = 0

Query: 4  SSSDSTPTAFSGFFTCFALIFFILSPLVHAH--XXXXXXXXXSDGTSIDQGIAYVLMLMA 63
          +SS+ST  AFSG FT F LI FILSPLV AH    XXXXXXX DGTSIDQG+AYVLML+A
Sbjct: 2  ASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLVA 61

Query: 64 LVLTYLIHPLDASSYQFFLN 82
          LVLTYLIHPLDASSY FFLN
Sbjct: 62 LVLTYLIHPLDASSYNFFLN 81

BLAST of Carg20869 vs. NCBI nr
Match: XP_022924337.1 (arabinogalactan peptide 16-like [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 64/82 (78.05%), Postives = 68/82 (82.93%), Query Frame = 0

Query: 4  SSSDSTPTAFSGFFTCFALIFFILSPLVHAH----XXXXXXXXXSDGTSIDQGIAYVLML 63
          +SS+ST  AFSG FT F LI FILSPLV AH    XXXXXXXXX  GTSIDQG+AYVLML
Sbjct: 2  ASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVXXXXXXXXXXXXGTSIDQGVAYVLML 61

Query: 64 MALVLTYLIHPLDASSYQFFLN 82
          +ALVLTYLIHPLDASSY FFLN
Sbjct: 62 VALVLTYLIHPLDASSYNFFLN 83

BLAST of Carg20869 vs. TAIR10
Match: AT3G61640.1 (arabinogalactan protein 20)

HSP 1 Score: 70.9 bits (172), Expect = 4.2e-13
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 20 FALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQ 79
          FA +F ++SP   A          SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SSY 
Sbjct: 13 FAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSSYT 72

BLAST of Carg20869 vs. TAIR10
Match: AT2G46330.1 (arabinogalactan protein 16)

HSP 1 Score: 68.2 bits (165), Expect = 2.7e-12
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 17 FTCFALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SS 76
          F  F+ +F ++  L  A          SDGTSIDQGIAY+LM++ALVLTYLIHPLDA SS
Sbjct: 10 FALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSS 69

Query: 77 YQFF 80
          Y FF
Sbjct: 70 YSFF 73

BLAST of Carg20869 vs. TAIR10
Match: AT5G24105.1 (arabinogalactan protein 41)

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-10
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 13 FSGFFTCFALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIH 70
          F G  T  ++IF IL P+ HA          SDGT+IDQGIAYVLML+ALVLTYLIH
Sbjct: 7  FFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

BLAST of Carg20869 vs. TAIR10
Match: AT5G53250.1 (arabinogalactan protein 22)

HSP 1 Score: 51.2 bits (121), Expect = 3.4e-07
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 20 FALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIH 70
          F +I  IL P+    XXXXXXXXXSDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 14 FVIISVILLPIAQXXXXXXXXXXXSDGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of Carg20869 vs. Swiss-Prot
Match: sp|Q9M373|AGP20_ARATH (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.6e-12
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 20 FALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQ 79
          FA +F ++SP   A          SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SSY 
Sbjct: 13 FAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSSYT 72

BLAST of Carg20869 vs. Swiss-Prot
Match: sp|O82337|AGP16_ARATH (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.9e-11
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 17 FTCFALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SS 76
          F  F+ +F ++  L  A          SDGTSIDQGIAY+LM++ALVLTYLIHPLDA SS
Sbjct: 10 FALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSS 69

Query: 77 YQFF 80
          Y FF
Sbjct: 70 YSFF 73

BLAST of Carg20869 vs. Swiss-Prot
Match: sp|Q8L9T8|AGP41_ARATH (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-09
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 13 FSGFFTCFALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIH 70
          F G  T  ++IF IL P+ HA          SDGT+IDQGIAYVLML+ALVLTYLIH
Sbjct: 7  FFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

BLAST of Carg20869 vs. Swiss-Prot
Match: sp|Q9FK16|AGP22_ARATH (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.2e-06
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 20 FALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIH 70
          F +I  IL P+    XXXXXXXXXSDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 14 FVIISVILLPIAQXXXXXXXXXXXSDGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of Carg20869 vs. TrEMBL
Match: tr|A0A0A0L7A0|A0A0A0L7A0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120410 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-16
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 5  SSDSTPTAFSGFFTCFALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVL 64
          S +ST  AF   FT F+LIFFILSPLV A    XXXXXX DGTSIDQGIAYVLML+ALVL
Sbjct: 3  SFNSTSRAFKALFTFFSLIFFILSPLVDA-TPAXXXXXXXDGTSIDQGIAYVLMLLALVL 62

Query: 65 TYLIHPLDASSYQFFLN 82
          TYLIHPLDASSY FFLN
Sbjct: 63 TYLIHPLDASSYNFFLN 78

BLAST of Carg20869 vs. TrEMBL
Match: tr|A0A061DUP4|A0A061DUP4_THECC (Arabinogalactan protein 20 OS=Theobroma cacao OX=3641 GN=TCM_005200 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-14
Identity = 46/68 (67.65%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 12 AFSGFFTCFALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIHPL 71
          AF G    FAL+F I+SP V A          SDGTSIDQGIAYVLML+ALVLTYLIHPL
Sbjct: 8  AFVGVMAIFALVFAIVSPFVEAQSAAPAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPL 67

Query: 72 DASSYQFF 80
          DASSY FF
Sbjct: 68 DASSYSFF 75

BLAST of Carg20869 vs. TrEMBL
Match: tr|A0A2P5R746|A0A2P5R746_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20468 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 13 FSGFFTCFALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIHPLD 72
          F G     AL+F I+SP V A XXXXXXXX SDGTSIDQGIAYVLML+AL+LTYLIHPLD
Sbjct: 9  FMGVMAILALVFAIVSPYVEAQXXXXXXXXQSDGTSIDQGIAYVLMLVALMLTYLIHPLD 68

Query: 73 ASSYQFF 80
          ASSY FF
Sbjct: 69 ASSYTFF 75

BLAST of Carg20869 vs. TrEMBL
Match: tr|A0A1R3H1V1|A0A1R3H1V1_COCAP (Arabinogalactan peptide, AGP OS=Corchorus capsularis OX=210143 GN=CCACVL1_21839 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.6e-12
Identity = 52/68 (76.47%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 12 AFSGFFTCFALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIHPL 71
          AF      FAL+F I+SP V   XXXXXXXXX DGTSIDQGIAYVLML+ALVLTYLIHPL
Sbjct: 8  AFMSVVAIFALVFAIVSPYVEXXXXXXXXXXXXDGTSIDQGIAYVLMLVALVLTYLIHPL 67

Query: 72 DASSYQFF 80
          DASSY FF
Sbjct: 68 DASSYSFF 75

BLAST of Carg20869 vs. TrEMBL
Match: tr|A0A1R3KNB5|A0A1R3KNB5_9ROSI (Arabinogalactan peptide, AGP OS=Corchorus olitorius OX=93759 GN=COLO4_06332 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.6e-12
Identity = 52/68 (76.47%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 12 AFSGFFTCFALIFFILSPLVHAHXXXXXXXXXSDGTSIDQGIAYVLMLMALVLTYLIHPL 71
          AF      FAL+F I+SP V   XXXXXXXXX DGTSIDQGIAYVLML+ALVLTYLIHPL
Sbjct: 8  AFMSVVAIFALVFAIVSPYVEXXXXXXXXXXXXDGTSIDQGIAYVLMLVALVLTYLIHPL 67

Query: 72 DASSYQFF 80
          DASSY FF
Sbjct: 68 DASSYSFF 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022934029.11.4e-2290.24arabinogalactan peptide 20-like [Cucurbita moschata][more]
XP_023538848.15.3e-2288.89arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo][more]
XP_022974647.14.2e-1983.95arabinogalactan peptide 16-like [Cucurbita maxima] >XP_022975026.1 arabinogalact... [more]
XP_023528757.14.6e-1878.75arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo][more]
XP_022924337.15.1e-1778.05arabinogalactan peptide 16-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G61640.14.2e-1361.29arabinogalactan protein 20[more]
AT2G46330.12.7e-1257.81arabinogalactan protein 16[more]
AT5G24105.11.5e-1059.65arabinogalactan protein 41[more]
AT5G53250.13.4e-0772.00arabinogalactan protein 22[more]
Match NameE-valueIdentityDescription
sp|Q9M373|AGP20_ARATH7.6e-1261.29Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1[more]
sp|O82337|AGP16_ARATH4.9e-1157.81Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1[more]
sp|Q8L9T8|AGP41_ARATH2.7e-0959.65Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1[more]
sp|Q9FK16|AGP22_ARATH6.2e-0672.00Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0L7A0|A0A0A0L7A0_CUCSA1.7e-1677.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120410 PE=4 SV=1[more]
tr|A0A061DUP4|A0A061DUP4_THECC4.6e-1467.65Arabinogalactan protein 20 OS=Theobroma cacao OX=3641 GN=TCM_005200 PE=4 SV=1[more]
tr|A0A2P5R746|A0A2P5R746_GOSBA1.9e-1276.12Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20468 PE=4 SV... [more]
tr|A0A1R3H1V1|A0A1R3H1V1_COCAP5.6e-1276.47Arabinogalactan peptide, AGP OS=Corchorus capsularis OX=210143 GN=CCACVL1_21839 ... [more]
tr|A0A1R3KNB5|A0A1R3KNB5_9ROSI5.6e-1276.47Arabinogalactan peptide, AGP OS=Corchorus olitorius OX=93759 GN=COLO4_06332 PE=4... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20869-RACarg20869-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan protein 16/20/22/41PFAMPF06376AGPcoord: 37..69
e-value: 1.0E-17
score: 63.5
IPR009424Arabinogalactan protein 16/20/22/41PANTHERPTHR33374FAMILY NOT NAMEDcoord: 15..77
NoneNo IPR availablePANTHERPTHR33374:SF9SUBFAMILY NOT NAMEDcoord: 15..77