Carg20964 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20964
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Arabinogalactan peptide
Location	Cucurbita_argyrosperma_scaffold_170 : 71972 .. 72671 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTACTCTTCTCCTTCTCTTTCTTCGTTCTTCTTCATCATTTGATCCGAGGTTCCAGAGATTTGGTTGTTCCGAGAGGGAGACCATCCATGGCGTCCTCTAATTCTACTTCTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCGTTGACGCCCACTCTTCGGTCCCTGCTCCCGCTCCCGCTCCCGCTAGCGATGGTAACTACATTCCTCCTTTTTTATTGATACCGAAGAATCTAGATCTTTCTTTCAATTCGGGTAGGAACATAATAATTTTCGAATCTGAAGCTGACTGGACATTTTTGTGTGAAAACAGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCATCTTCCTACAACTTTTTTCTCAATTGAATTCTAGGATTGTAGCAATGTAGGCGCTGTTTGTGGACGTTTTGAGAAGGAACGAGGCCCAACTTTCTATCTCGTTGTCATAAATGTAGGTTTCAGAGGAACATGTTCATATTGGGTTTCGCAGATTTTGATCCATTGGTCTAATTATTCATTTGTTTATTCCATTACCTTTCTCTCTTCTTTTATCATGATTTATACACTGGATCCATTTTACAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAG

mRNA sequence

ACTACTCTTCTCCTTCTCTTTCTTCGTTCTTCTTCATCATTTGATCCGAGGTTCCAGAGATTTGGTTGTTCCGAGAGGGAGACCATCCATGGCGTCCTCTAATTCTACTTCTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCGTTGACGCCCACTCTTCGGTCCCTGCTCCCGCTCCCGCTCCCGCTAGCGATGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCATCTTCCTACAACTTTTTTCTCAATTGAATTCTAGGATTGTAGCAATGTAGGCGCTGTTTGTGGACGTTTTGAGAAGGAACGAGGCCCAACTTTCTATCTCGTTGTCATAAATGTAGGTTTCAGAGGAACATGTTCATATTGGGTTTCGCAGATTTTGATCCATTGGTCTAATTATTCATTTGTTTATTCCATTACCTTTCTCTCTTCTTTTATCATGATTTATACACTGGATCCATTTTACAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAG

Coding sequence (CDS)

ATGGCGTCCTCTAATTCTACTTCTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCGTTGACGCCCACTCTTCGGTCCCTGCTCCCGCTCCCGCTCCCGCTAGCGATGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCATCTTCCTACAACTTTTTTCTCAATTGA

Protein sequence

MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

Homology

[Close]

BLAST of Carg20964 vs. NCBI nr
Match: XP_023528757.1 (arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-29
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLV 60
          MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLV
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLV 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 82
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 81

[Close]

BLAST of Carg20964 vs. NCBI nr
Match: XP_022924337.1 (arabinogalactan peptide 16-like [Cucurbita moschata])

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-26
Identity = 79/83 (95.18%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV--PXXXXXXXXDGTSIDQGVAYVLM 60
          MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV   XXXXXXXX GTSIDQGVAYVLM
Sbjct: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVXXXXXXXXXXXXGTSIDQGVAYVLM 60

Query: 61 LVALVLTYLIHPLDASSYNFFLN 82
          LVALVLTYLIHPLDASSYNFFLN
Sbjct: 61 LVALVLTYLIHPLDASSYNFFLN 83

[Close]

BLAST of Carg20964 vs. NCBI nr
Match: XP_022979386.1 (arabinogalactan peptide 20-like [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 3.9e-25
Identity = 77/83 (92.77%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVP--XXXXXXXXDGTSIDQGVAYVLM 60
          MASSNST RAFSGLFTFFTLILFILSPL+DAHSSVP  XXXXXXXX GTSIDQGVAYVLM
Sbjct: 1  MASSNSTFRAFSGLFTFFTLILFILSPLIDAHSSVPXXXXXXXXXXXGTSIDQGVAYVLM 60

Query: 61 LVALVLTYLIHPLDASSYNFFLN 82
          LVALVLTYLIHPLDASS NFFLN
Sbjct: 61 LVALVLTYLIHPLDASSNNFFLN 83

[Close]

BLAST of Carg20964 vs. NCBI nr
Match: XP_004133836.1 (PREDICTED: arabinogalactan peptide 20 [Cucumis sativus] >KGN56462.1 hypothetical protein Csa_3G120410 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 68/81 (83.95%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLV 60
          M S NSTSRAF  LFTFF+LI FILSPLVDA    P XXXXXXXDGTSIDQG+AYVLML+
Sbjct: 1  MESFNSTSRAFKALFTFFSLIFFILSPLVDA---TPAXXXXXXXDGTSIDQGIAYVLMLL 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 82
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 78

[Close]

BLAST of Carg20964 vs. NCBI nr
Match: XP_022147463.1 (arabinogalactan peptide 20-like [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 8.5e-20
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLV 60
          MASS STSRAFS LFT F LI FI+SPLVDAH    XXXXXXXX   SIDQG+AYVLML+
Sbjct: 1  MASSISTSRAFSSLFTAFALIFFIVSPLVDAHXXXXXXXXXXXXXXXSIDQGIAYVLMLL 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 82
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 81

[Close]

BLAST of Carg20964 vs. TAIR10
Match: AT3G61640.1 (arabinogalactan protein 20)

HSP 1 Score: 68.2 bits (165), Expect = 2.7e-12
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLV 60
          MAS NS +     +   F  +  ++SP   A S  P        DGTSIDQG+AY+LM+V
Sbjct: 1  MASRNSVA-----VIALFAFVFAVISPFAGAQSLAP--APSPTSDGTSIDQGIAYLLMVV 60

Query: 61 ALVLTYLIHPLDA--SSYNFF 80
          ALVLTYLIHPLDA  SSY FF
Sbjct: 61 ALVLTYLIHPLDASSSSYTFF 74

[Close]

BLAST of Carg20964 vs. TAIR10
Match: AT2G46330.1 (arabinogalactan protein 16)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-12
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLV 60
          MAS NS +      F  F+ +  ++  L  A S  P        DGTSIDQG+AY+LM+V
Sbjct: 1  MASRNSVTG-----FALFSFVFAVILSLAGAQSLAP--APAPTSDGTSIDQGIAYLLMVV 60

Query: 61 ALVLTYLIHPLDA-SSYNFF 80
          ALVLTYLIHPLDA SSY+FF
Sbjct: 61 ALVLTYLIHPLDASSSYSFF 73

[Close]

BLAST of Carg20964 vs. TAIR10
Match: AT5G24105.1 (arabinogalactan protein 41)

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-10
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 6  STSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLVALVLT 65
          S SR F G+ T  ++I  IL P+  A S+ P        DGT+IDQG+AYVLMLVALVLT
Sbjct: 2  SGSRLFFGVSTIVSIIFAILLPMAHAQSAAP--APAPTSDGTTIDQGIAYVLMLVALVLT 61

Query: 66 YLIH 70
          YLIH
Sbjct: 62 YLIH 63

[Close]

BLAST of Carg20964 vs. TAIR10
Match: AT5G53250.1 (arabinogalactan protein 22)

HSP 1 Score: 45.4 bits (106), Expect = 1.9e-05
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 14 LFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLVALVLTYLIH 70
          +   F +I  IL P+  A     XXXXXXX DGTSIDQG+AYVLM+VAL LTY IH
Sbjct: 10 ILAVFVIISVILLPI--AQXXXXXXXXXXXSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of Carg20964 vs. Swiss-Prot
Match: sp|Q9M373|AGP20_ARATH (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.9e-11
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLV 60
          MAS NS +     +   F  +  ++SP   A S  P        DGTSIDQG+AY+LM+V
Sbjct: 1  MASRNSVA-----VIALFAFVFAVISPFAGAQSLAP--APSPTSDGTSIDQGIAYLLMVV 60

Query: 61 ALVLTYLIHPLDA--SSYNFF 80
          ALVLTYLIHPLDA  SSY FF
Sbjct: 61 ALVLTYLIHPLDASSSSYTFF 74

[Close]

BLAST of Carg20964 vs. Swiss-Prot
Match: sp|O82337|AGP16_ARATH (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLV 60
          MAS NS +      F  F+ +  ++  L  A S  P        DGTSIDQG+AY+LM+V
Sbjct: 1  MASRNSVTG-----FALFSFVFAVILSLAGAQSLAP--APAPTSDGTSIDQGIAYLLMVV 60

Query: 61 ALVLTYLIHPLDA-SSYNFF 80
          ALVLTYLIHPLDA SSY+FF
Sbjct: 61 ALVLTYLIHPLDASSSYSFF 73

[Close]

BLAST of Carg20964 vs. Swiss-Prot
Match: sp|Q8L9T8|AGP41_ARATH (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-09
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 6  STSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLVALVLT 65
          S SR F G+ T  ++I  IL P+  A S+ P        DGT+IDQG+AYVLMLVALVLT
Sbjct: 2  SGSRLFFGVSTIVSIIFAILLPMAHAQSAAP--APAPTSDGTTIDQGIAYVLMLVALVLT 61

Query: 66 YLIH 70
          YLIH
Sbjct: 62 YLIH 63

[Close]

BLAST of Carg20964 vs. Swiss-Prot
Match: sp|Q9FK16|AGP22_ARATH (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-04
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 14 LFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLVALVLTYLIH 70
          +   F +I  IL P+  A     XXXXXXX DGTSIDQG+AYVLM+VAL LTY IH
Sbjct: 10 ILAVFVIISVILLPI--AQXXXXXXXXXXXSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of Carg20964 vs. TrEMBL
Match: tr|A0A0A0L7A0|A0A0A0L7A0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120410 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 68/81 (83.95%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLV 60
          M S NSTSRAF  LFTFF+LI FILSPLVDA    P XXXXXXXDGTSIDQG+AYVLML+
Sbjct: 1  MESFNSTSRAFKALFTFFSLIFFILSPLVDA---TPAXXXXXXXDGTSIDQGIAYVLMLL 60

Query: 61 ALVLTYLIHPLDASSYNFFLN 82
          ALVLTYLIHPLDASSYNFFLN
Sbjct: 61 ALVLTYLIHPLDASSYNFFLN 78

[Close]

BLAST of Carg20964 vs. TrEMBL
Match: tr|A0A061DUP4|A0A061DUP4_THECC (Arabinogalactan protein 20 OS=Theobroma cacao OX=3641 GN=TCM_005200 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.3e-15
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 7  TSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLVALVLTY 66
          +SRAF G+   F L+  I+SP V+A S+ P        DGTSIDQG+AYVLMLVALVLTY
Sbjct: 5  SSRAFVGVMAIFALVFAIVSPFVEAQSAAP--APSPTSDGTSIDQGIAYVLMLVALVLTY 64

Query: 67 LIHPLDASSYNFF 80
          LIHPLDASSY+FF
Sbjct: 65 LIHPLDASSYSFF 75

[Close]

BLAST of Carg20964 vs. TrEMBL
Match: tr|A0A0B0PDA5|A0A0B0PDA5_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_27165 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 7  TSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLVALVLTY 66
          +S  F G+   F L+   +SP V+A S+ P        DGTSIDQG+AYVLM+VALVLTY
Sbjct: 5  SSSTFLGVAVIFGLVFASMSPYVEAQSASP--APSPTSDGTSIDQGIAYVLMVVALVLTY 64

Query: 67 LIHPLDASSYNFF 80
          LIHPLD+SSY FF
Sbjct: 65 LIHPLDSSSYTFF 75

[Close]

BLAST of Carg20964 vs. TrEMBL
Match: tr|A0A1U8AFS3|A0A1U8AFS3_NELNU (arabinogalactan peptide 20-like OS=Nelumbo nucifera OX=4432 GN=LOC104603947 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 44/74 (59.46%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 6  STSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLVALVLT 65
          + SR   G+     LI  +  P V A S  P        DGTSIDQG+AYVLMLVALVLT
Sbjct: 2  AVSRVSFGVVAIVALIFAVALPAVQAQSVAP--APAPTSDGTSIDQGIAYVLMLVALVLT 61

Query: 66 YLIHPLDASSYNFF 80
          YLIHPLDASSYNFF
Sbjct: 62 YLIHPLDASSYNFF 73

[Close]

BLAST of Carg20964 vs. TrEMBL
Match: tr|A0A1U8NZW7|A0A1U8NZW7_GOSHI (arabinogalactan peptide 20-like OS=Gossypium hirsutum OX=3635 GN=LOC107952937 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 7  TSRAFSGLFTFFTLILFILSPLVDAHSSVPXXXXXXXXDGTSIDQGVAYVLMLVALVLTY 66
          +S  F G+   F L+   +SP V+A S+ P        DGTSIDQG+AYVLM+VALVLTY
Sbjct: 5  SSSTFLGVAVIFGLVFASMSPYVEAQSASP--APSPTSDGTSIDQGIAYVLMVVALVLTY 64

Query: 67 LIHPLDASSYNFF 80
          LIHPLD+SSY FF
Sbjct: 65 LIHPLDSSSYTFF 75

The following BLAST results are available for this feature:

BLAST of Carg20964 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528757.1	2.6e-29	100.00	arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]	[more]
XP_022924337.1	4.6e-26	95.18	arabinogalactan peptide 16-like [Cucurbita moschata]	[more]
XP_022979386.1	3.9e-25	92.77	arabinogalactan peptide 20-like [Cucurbita maxima]	[more]
XP_004133836.1	2.0e-21	83.95	PREDICTED: arabinogalactan peptide 20 [Cucumis sativus] >KGN56462.1 hypothetical...	[more]
XP_022147463.1	8.5e-20	81.48	arabinogalactan peptide 20-like [Momordica charantia]	[more]

BLAST of Carg20964 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61640.1	2.7e-12	51.85	arabinogalactan protein 20	[more]
AT2G46330.1	6.1e-12	52.50	arabinogalactan protein 16	[more]
AT5G24105.1	2.5e-10	56.25	arabinogalactan protein 41	[more]
AT5G53250.1	1.9e-05	60.71	arabinogalactan protein 22	[more]

BLAST of Carg20964 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M373\|AGP20_ARATH	4.9e-11	51.85	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
sp\|O82337\|AGP16_ARATH	1.1e-10	52.50	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
sp\|Q8L9T8\|AGP41_ARATH	4.6e-09	56.25	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
sp\|Q9FK16\|AGP22_ARATH	3.4e-04	60.71	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]

BLAST of Carg20964 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7A0\|A0A0A0L7A0_CUCSA	1.3e-21	83.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120410 PE=4 SV=1	[more]
tr\|A0A061DUP4\|A0A061DUP4_THECC	9.3e-15	64.38	Arabinogalactan protein 20 OS=Theobroma cacao OX=3641 GN=TCM_005200 PE=4 SV=1	[more]
tr\|A0A0B0PDA5\|A0A0B0PDA5_GOSAR	2.1e-11	57.53	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_27165 PE=4 SV=1	[more]
tr\|A0A1U8AFS3\|A0A1U8AFS3_NELNU	2.1e-11	59.46	arabinogalactan peptide 20-like OS=Nelumbo nucifera OX=4432 GN=LOC104603947 PE=4...	[more]
tr\|A0A1U8NZW7\|A0A1U8NZW7_GOSHI	2.1e-11	57.53	arabinogalactan peptide 20-like OS=Gossypium hirsutum OX=3635 GN=LOC107952937 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009424	AGP16/20/22/41

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20964-RA	Carg20964-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 37..69 e-value: 2.5E-18 score: 65.5
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	FAMILY NOT NAMED	coord: 9..77
None	No IPR available	PANTHER	PTHR33374:SF9	SUBFAMILY NOT NAMED	coord: 9..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20964	Cla021191	Watermelon (97103) v1	carwmB0487
Carg20964	Csa3G120410	Cucumber (Chinese Long) v2	carcuB0522
Carg20964	MELO3C006062	Melon (DHL92) v3.5.1	carmeB0497
Carg20964	ClCG05G001090	Watermelon (Charleston Gray)	carwcgB0474
Carg20964	CmaCh00G003360	Cucurbita maxima (Rimu)	carcmaB0682
Carg20964	CmaCh06G010330	Cucurbita maxima (Rimu)	carcmaB0685
Carg20964	CmaCh14G020830	Cucurbita maxima (Rimu)	carcmaB0683
Carg20964	CmoCh14G021420	Cucurbita moschata (Rifu)	carcmoB0664
Carg20964	CmoCh06G010710	Cucurbita moschata (Rifu)	carcmoB0665
Carg20964	Lsi05G020890	Bottle gourd (USVL1VR-Ls)	carlsiB445
Carg20964	Cp4.1LG08g01130	Cucurbita pepo (Zucchini)	carcpeB0693
Carg20964	Cp4.1LG03g16390	Cucurbita pepo (Zucchini)	carcpeB0691
Carg20964	CsGy3G008420	Cucumber (Gy14) v2	carcgybB0499
Carg20964	MELO3C006062.2	Melon (DHL92) v3.6.1	carmedB0503
Carg20964	CsaV3_3G008420	Cucumber (Chinese Long) v3	carcucB0528
Carg20964	Cla97C05G081390	Watermelon (97103) v2	carwmbB0513
Carg20964	Bhi01G000308	Wax gourd	carwgoB0595

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20964	Carg20869	Silver-seed gourd	carcarB477

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20964	Melon (DHL92) v3.6.1	carmedB0502
Carg20964	Watermelon (Charleston Gray)	carwcgB0475
Carg20964	Watermelon (Charleston Gray)	carwcgB0476
Carg20964	Watermelon (97103) v1	carwmB0488
Carg20964	Cucumber (Gy14) v1	carcgyB0563
Carg20964	Cucumber (Gy14) v1	carcgyB0564
Carg20964	Cucurbita pepo (Zucchini)	carcpeB0690
Carg20964	Wild cucumber (PI 183967)	carcpiB0529
Carg20964	Wild cucumber (PI 183967)	carcpiB0530
Carg20964	Bottle gourd (USVL1VR-Ls)	carlsiB444
Carg20964	Melon (DHL92) v3.5.1	carmeB0496
Carg20964	Melon (DHL92) v3.5.1	carmeB0498