CmaCh14G020830 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACTCTTCTCCTTCTCTTTCTTCGTTCTTCTTCATCGTTTGATCCGAGCTTCCAGAGATTTGGTTGTTCCGAGAGGGAGACCATCCATGGCGTCCTCTAATTCTACTTTTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCATTGACGCCCACTCTTCGGTCCCCTCTCCCGCTCCCGCTCCCGCTCCCGCTAGCGATGGTAACTACATTCCTCCTTTTCATTTCACTTCTATTTTCTAATTTGCTCAATCTCTATCTCTTCGCATTCTTGTTCTTCTTCTGTATTCCTTGTTTATTGATACCGAAGAATCTAGATCTTTCTTTCAATTCGGGTAGGAACATAATAGTTTTCGAATCTGAAGCTGATTGTGGACAATTTTGTGTGAAAACAGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCATCTTCCAACAATTTTTTTCTGAATTGAATTCTAGGATTGTAGCAATGTAGGCGCTGTTTGTGGACGTTTTGAGAAGGAACGAGGCCCAACATTCTATTTCGTTGTCATAAATGCAGGTTTCAGAGGAATATGTTCATATTGGGTTTCGCAGATTTTAATCCATTGGTCTAATTATTCATTTGTTTATTCCATTACCTTTTTCTCTTCTTTTATCATGATTTATACACTGGATCCATTTTACAGAGAGAGAGAGAGAGTTCAAACCACA TACTCTTCTCCTTCTCTTTCTTCGTTCTTCTTCATCGTTTGATCCGAGCTTCCAGAGATTTGGTTGTTCCGAGAGGGAGACCATCCATGGCGTCCTCTAATTCTACTTTTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCATTGACGCCCACTCTTCGGTCCCCTCTCCCGCTCCCGCTCCCGCTCCCGCTAGCGATGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCATCTTCCAACAATTTTTTTCTGAATTGAATTCTAGGATTGTAGCAATGTAGGCGCTGTTTGTGGACGTTTTGAGAAGGAACGAGGCCCAACATTCTATTTCGTTGTCATAAATGCAGGTTTCAGAGGAATATGTTCATATTGGGTTTCGCAGATTTTAATCCATTGGTCTAATTATTCATTTGTTTATTCCATTACCTTTTTCTCTTCTTTTATCATGATTTATACACTGGATCCATTTTACAGAGAGAGAGAGAGAGTTCAAACCACA ATGGCGTCCTCTAATTCTACTTTTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCATTGACGCCCACTCTTCGGTCCCCTCTCCCGCTCCCGCTCCCGCTCCCGCTAGCGATGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCATCTTCCAACAATTTTTTTCTGAATTGA MASSNSTFRAFSGLFTFFTLILFILSPLIDAHSSVPSPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSNNFFLN
BLAST of CmaCh14G020830 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 4.8e-14 Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1
BLAST of CmaCh14G020830 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 3.1e-13 Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 1
BLAST of CmaCh14G020830 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 4.2e-10 Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1
BLAST of CmaCh14G020830 vs. TrEMBL
Match: A0A0A0L7A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120410 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 1.2e-24 Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 1
BLAST of CmaCh14G020830 vs. TrEMBL
Match: A0A061DUP4_THECC (Arabinogalactan protein 20 OS=Theobroma cacao GN=TCM_005200 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 2.1e-16 Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1
BLAST of CmaCh14G020830 vs. TrEMBL
Match: A9PBL3_POPTR (Arabinogalactan-protein OS=Populus trichocarpa GN=POPTR_0014s09050g PE=2 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 4.6e-16 Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 1
BLAST of CmaCh14G020830 vs. TrEMBL
Match: A0A067JXA9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14293 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 7.9e-16 Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 1
BLAST of CmaCh14G020830 vs. TrEMBL
Match: A0A0D2TCU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105900 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 3.9e-15 Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 1
BLAST of CmaCh14G020830 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20) HSP 1 Score: 78.2 bits (191), Expect = 2.7e-15 Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1
BLAST of CmaCh14G020830 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16) HSP 1 Score: 75.5 bits (184), Expect = 1.7e-14 Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 1
BLAST of CmaCh14G020830 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41) HSP 1 Score: 70.1 bits (170), Expect = 7.3e-13 Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1
BLAST of CmaCh14G020830 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22) HSP 1 Score: 65.1 bits (157), Expect = 2.4e-11 Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1
BLAST of CmaCh14G020830 vs. NCBI nr
Match: gi|449432096|ref|XP_004133836.1| (PREDICTED: arabinogalactan peptide 20 [Cucumis sativus]) HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24 Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 1
BLAST of CmaCh14G020830 vs. NCBI nr
Match: gi|590721494|ref|XP_007051629.1| (Arabinogalactan protein 20 [Theobroma cacao]) HSP 1 Score: 92.8 bits (229), Expect = 3.0e-16 Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1
BLAST of CmaCh14G020830 vs. NCBI nr
Match: gi|224130474|ref|XP_002320846.1| (arabinogalactan-protein [Populus trichocarpa]) HSP 1 Score: 91.7 bits (226), Expect = 6.7e-16 Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 1
BLAST of CmaCh14G020830 vs. NCBI nr
Match: gi|743789959|ref|XP_011037662.1| (PREDICTED: arabinogalactan peptide 20 [Populus euphratica]) HSP 1 Score: 91.3 bits (225), Expect = 8.7e-16 Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 1
BLAST of CmaCh14G020830 vs. NCBI nr
Match: gi|802694771|ref|XP_012083260.1| (PREDICTED: arabinogalactan peptide 16 [Jatropha curcas]) HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15 Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |