CmoCh06G010710.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G010710.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Arabinogalactan protein 20
Location	Cmo_Chr06 : 8296612 .. 8297255 (-)
Sequence length	500

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATCATTTCTTCCACAGATTTGTTTCTTTGGAGAGGGACAGCAACAATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGTAATCTACGCATCTGATTTCTAAGCTCCATCAGTTTTTGTGTCTGCATTGTTCTTTTTGTTGATTGATGATGATGATGATGAATGTAGGTTTTTCAAATTTTTGATTTGGAAGTGATTTGTTGACAATTTTGTGTAAAATCAGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAAATGAGCTCTAGGATTGTAGCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGAAGTAAGGCCAACTTTCTTGCTCTCGTTGTGATAAATGTAGGGTTGAAGAGGAATTTTCATGTTGAGTTTGCCAGATTTTGATCCATTCTTTTATTTATTGATTGTTTAATCCATTACTTTCAATTTTGT

mRNA sequence

TTCATCATTTCTTCCACAGATTTGTTTCTTTGGAGAGGGACAGCAACAATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAAATGAGCTCTAGGATTGTAGCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGAAGTAAGGCCAACTTTCTTGCTCTCGTTGTGATAAATGTAGGGTTGAAGAGGAATTTTCATGTTGAGTTTGCCAGATTTTGATCCATTCTTTTATTTATTGATTGTTTAATCCATTACTTTCAATTTTGT

Coding sequence (CDS)

ATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAAATGA

Homology

[Close]

BLAST of CmoCh06G010710.1 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-14
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 20 FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SS 79
          FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SS
Sbjct: 13 FAFVFAVISPFAGAQSL--APAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSS 72

Query: 80 YQFF 82
          Y FF
Sbjct: 73 YTFF 74

[Close]

BLAST of CmoCh06G010710.1 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-14
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 17 FTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA- 76
          F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA 
Sbjct: 10 FALFSFVFAVILSLAGAQSL--APAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 69

Query: 77 SSYQFF 82
          SSY FF
Sbjct: 70 SSYSFF 73

[Close]

BLAST of CmoCh06G010710.1 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1


Query: 20 FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 72
          F +I  IL P+  +HSS  +PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 14 FVIISVILLPIAQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of CmoCh06G010710.1 vs. TrEMBL
Match: A0A0A0L7A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120410 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-20
Identity = 60/78 (76.92%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 5  SSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMAL 64
          S +ST  AF   FT F+LIFFILSPLV A     APAPAP+SDGTSIDQGIAYVLML+AL
Sbjct: 3  SFNSTSRAFKALFTFFSLIFFILSPLVDA---TPAPAPAPSSDGTSIDQGIAYVLMLLAL 62

Query: 65 VLTYLIHPLDASSYQFFL 83
          VLTYLIHPLDASSY FFL
Sbjct: 63 VLTYLIHPLDASSYNFFL 77

[Close]

BLAST of CmoCh06G010710.1 vs. TrEMBL
Match: A0A061DUP4_THECC (Arabinogalactan protein 20 OS=Theobroma cacao GN=TCM_005200 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.2e-17
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 12 AFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 71
          AF G    FAL+F I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIH
Sbjct: 8  AFVGVMAIFALVFAIVSPFVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIH 67

Query: 72 PLDASSYQFF 82
          PLDASSY FF
Sbjct: 68 PLDASSYSFF 75

[Close]

BLAST of CmoCh06G010710.1 vs. TrEMBL
Match: A0A0D2TCU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105900 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-16
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 1


Query: 18 TCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 77
          T FAL+F I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALVFAIVSPNVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 78 YQFF 82
          Y FF
Sbjct: 74 YTFF 75

[Close]

BLAST of CmoCh06G010710.1 vs. TrEMBL
Match: A0A0B0PYH7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05303 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.1e-16
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 13 FSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHP 72
          F G     AL+F I+SP V A   ASAPAP+P SDGTSIDQGIAYVLML+AL+LTYLIHP
Sbjct: 9  FMGVMAILALVFAIVSPYVEAQ--ASAPAPSPTSDGTSIDQGIAYVLMLVALMLTYLIHP 68

Query: 73 LDASSYQFF 82
          LDASSY FF
Sbjct: 69 LDASSYTFF 75

[Close]

BLAST of CmoCh06G010710.1 vs. TrEMBL
Match: A0A0B0PFR1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_09698 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.9e-16
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 18 TCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 77
          T FALIF I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALIFAIVSPKVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 78 YQF 81
          Y F
Sbjct: 74 YTF 74

[Close]

BLAST of CmoCh06G010710.1 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 79.7 bits (195), Expect = 9.2e-16
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 20 FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SS 79
          FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SS
Sbjct: 13 FAFVFAVISPFAGAQSL--APAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDASSSS 72

Query: 80 YQFF 82
          Y FF
Sbjct: 73 YTFF 74

[Close]

BLAST of CmoCh06G010710.1 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 77.8 bits (190), Expect = 3.5e-15
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 17 FTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA- 76
          F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA 
Sbjct: 10 FALFSFVFAVILSLAGAQSL--APAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 69

Query: 77 SSYQFF 82
          SSY FF
Sbjct: 70 SSYSFF 73

[Close]

BLAST of CmoCh06G010710.1 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 73.6 bits (179), Expect = 6.6e-14
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 13 FSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 72
          F G  T  ++IF IL P+ HA S+  APAPAP SDGT+IDQGIAYVLML+ALVLTYLIH
Sbjct: 7  FFGVSTIVSIIFAILLPMAHAQSA--APAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of CmoCh06G010710.1 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1


Query: 20 FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 72
          F +I  IL P+  +HSS  +PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Sbjct: 14 FVIISVILLPIAQSHSS--SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of CmoCh06G010710.1 vs. NCBI nr
Match: gi|449432096|ref|XP_004133836.1| (PREDICTED: arabinogalactan peptide 20 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-20
Identity = 60/78 (76.92%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 5  SSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMAL 64
          S +ST  AF   FT F+LIFFILSPLV A     APAPAP+SDGTSIDQGIAYVLML+AL
Sbjct: 3  SFNSTSRAFKALFTFFSLIFFILSPLVDA---TPAPAPAPSSDGTSIDQGIAYVLMLLAL 62

Query: 65 VLTYLIHPLDASSYQFFL 83
          VLTYLIHPLDASSY FFL
Sbjct: 63 VLTYLIHPLDASSYNFFL 77

[Close]

BLAST of CmoCh06G010710.1 vs. NCBI nr
Match: gi|590721494|ref|XP_007051629.1| (Arabinogalactan protein 20 [Theobroma cacao])

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-17
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 12 AFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH 71
          AF G    FAL+F I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIH
Sbjct: 8  AFVGVMAIFALVFAIVSPFVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIH 67

Query: 72 PLDASSYQFF 82
          PLDASSY FF
Sbjct: 68 PLDASSYSFF 75

[Close]

BLAST of CmoCh06G010710.1 vs. NCBI nr
Match: gi|823187080|ref|XP_012490068.1| (PREDICTED: arabinogalactan peptide 20-like [Gossypium raimondii])

HSP 1 Score: 92.0 bits (227), Expect = 5.1e-16
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 1


Query: 18 TCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 77
          T FAL+F I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALVFAIVSPNVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 78 YQFF 82
          Y FF
Sbjct: 74 YTFF 75

[Close]

BLAST of CmoCh06G010710.1 vs. NCBI nr
Match: gi|728850111|gb|KHG29554.1| (hypothetical protein F383_05303 [Gossypium arboreum])

HSP 1 Score: 91.3 bits (225), Expect = 8.7e-16
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 13 FSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHP 72
          F G     AL+F I+SP V A   ASAPAP+P SDGTSIDQGIAYVLML+AL+LTYLIHP
Sbjct: 9  FMGVMAILALVFAIVSPYVEAQ--ASAPAPSPTSDGTSIDQGIAYVLMLVALMLTYLIHP 68

Query: 73 LDASSYQFF 82
          LDASSY FF
Sbjct: 69 LDASSYTFF 75

[Close]

BLAST of CmoCh06G010710.1 vs. NCBI nr
Match: gi|728844337|gb|KHG23780.1| (hypothetical protein F383_09698 [Gossypium arboreum])

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 18 TCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASS 77
          T FALIF I+SP V A S+  APAP+P SDGTSIDQGIAYVLML+ALVLTYLIHPLDASS
Sbjct: 14 TIFALIFAIVSPKVEAQSA--APAPSPTSDGTSIDQGIAYVLMLVALVLTYLIHPLDASS 73

Query: 78 YQF 81
          Y F
Sbjct: 74 YTF 74

The following BLAST results are available for this feature:

BLAST of CmoCh06G010710.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP20_ARATH	1.6e-14	68.75	Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1	[more]
AGP16_ARATH	6.2e-14	66.67	Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1	[more]
AGP22_ARATH	1.9e-10	67.31	Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1	[more]

BLAST of CmoCh06G010710.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7A0_CUCSA	1.8e-20	76.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120410 PE=4 SV=1	[more]
A0A061DUP4_THECC	3.2e-17	74.29	Arabinogalactan protein 20 OS=Theobroma cacao GN=TCM_005200 PE=4 SV=1	[more]
A0A0D2TCU0_GOSRA	3.6e-16	78.13	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105900 PE=4 SV=1	[more]
A0A0B0PYH7_GOSAR	6.1e-16	72.46	Uncharacterized protein OS=Gossypium arboreum GN=F383_05303 PE=4 SV=1	[more]
A0A0B0PFR1_GOSAR	7.9e-16	79.37	Uncharacterized protein OS=Gossypium arboreum GN=F383_09698 PE=4 SV=1	[more]

BLAST of CmoCh06G010710.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61640.1	9.2e-16	68.75	arabinogalactan protein 20	[more]
AT2G46330.1	3.5e-15	66.67	arabinogalactan protein 16	[more]
AT5G24105.1	6.6e-14	69.49	arabinogalactan protein 41	[more]
AT5G53250.1	1.1e-11	67.31	arabinogalactan protein 22	[more]

BLAST of CmoCh06G010710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432096\|ref\|XP_004133836.1\|	2.6e-20	76.92	PREDICTED: arabinogalactan peptide 20 [Cucumis sativus]	[more]
gi\|590721494\|ref\|XP_007051629.1\|	4.6e-17	74.29	Arabinogalactan protein 20 [Theobroma cacao]	[more]
gi\|823187080\|ref\|XP_012490068.1\|	5.1e-16	78.13	PREDICTED: arabinogalactan peptide 20-like [Gossypium raimondii]	[more]
gi\|728850111\|gb\|KHG29554.1\|	8.7e-16	72.46	hypothetical protein F383_05303 [Gossypium arboreum]	[more]
gi\|728844337\|gb\|KHG23780.1\|	1.1e-15	79.37	hypothetical protein F383_09698 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009424	AGP16/20/22/41

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G010710	CmoCh06G010710	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G010710.1	CmoCh06G010710.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G010710.1.three_prime_UTR.1	CmoCh06G010710.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G010710.1.CDS.2	CmoCh06G010710.1.CDS.2	CDS
CmoCh06G010710.1.CDS.1	CmoCh06G010710.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G010710.1.five_prime_UTR.1	CmoCh06G010710.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G010710.1.exon.2	CmoCh06G010710.1.exon.2	exon
CmoCh06G010710.1.exon.1	CmoCh06G010710.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan peptide, AGP	PFAM	PF06376	DUF1070	coord: 39..71 score: 8.3
None	No IPR available	PANTHER	PTHR33374	FAMILY NOT NAMED	coord: 20..81 score: 2.7
None	No IPR available	PANTHER	PTHR33374:SF6	ARABINOGALACTAN PEPTIDE 16-RELATED	coord: 20..81 score: 2.7