CmoCh05G012510 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGGTTTTGCTCTGTTCCTTGGAGAGGGAAACAAGCAGCATCTTTGTAGAGAAGAACAGAGAGACCAGAATTCTCCAAAGCCAAAACCCATTTTCTTCTCTCTCTGTGCGTGTGTGTGTGTGTGTGTGCAGAAGCTGCTACAGCTCCCCTGTGTCACTATCACCGTCCAAACCCTTCTCTATTTCAAACCAGGGAAGAACAGAGAACTTTTCTTAAAGCAAAGGGCATCTTGAATCAGCCGTTTCTGTGAAAACCCATCATTCCTATTACTCAAATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCTGCCTATTATCCCAACAACGTCACTACTGATCACATTCAACAGGTTCTTCTTCTTCTTCTTCTTCCTTTTTTATTTCTGTCTTGCAATCCATTTATCTTATTAATCCAACCCCATTTCCTGTTTTTCTTTCATTTCCCCTCTTTCTCTCAACTGGGTTTTCTTTGTTTTTCACTTATGGATGCTTTTCTTCTTTTAAATATTGGGTTTCTTCTTTCACGTGCCTTTGTCTCTACTGGATTATCTAATTACACAAGCTGAGACTAACCCATCTATGGATTTCTTGTTTATTTCCATCTCTTTTCTTGATATTTAAGTGTTTGTTTCCTTGTTGGTCTAAAGTTTATCACTCTGTTTTTTGAAATTGCATGATTGACTTCTGCCTTTTGGCCTTAATCTTAATGGAAAAGGAAGCTGAACTGGTTGGATGGTGGCTTATTTATGCTTTTTTGCCCCTCCCTAGCAATCAAGTGGACCAAAAGTGGTTTGTTGGGATATGACATTTATGAGCTTGAGGTTGATTTAGATGCTTGAAACCTCCCTCATATGAAACAGTTCAGGGCTTTGTTGAAGATCGTTTGGGAGGGAGTCTACATTGGTTAATTTAGGGAATGATCGTGAGGTATATATCTCCATTGGTTGGTACGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCTTTATTCCTAACATGATATTAGAGTCATGCTCTTAACTCAACCATGTCAATAGGATTCTCAAATGTCGAACAAAGAAGTTGTGAGGCTCGAAAGTGTAGTCAAAAGTGACTCAAGTGTCGAACGAAAGGTGTACTTCGTTCGAGGACTCCAAAGAAGGGGTTGAGCCTCGATTAAGGGAAGACTGTTCGAGGGCTCCATAGGTCTTTGAGAAGGCTCTATAGTGTACTTTGTTCGAGGGGAGGATTGTTGGGAGAGATCCCGCATTGGCTAATTTAGGGAATGATCATAGAAGCCTTTTGGAGAAGCCCAAAGTAAGGCCACGAGAGCTTATGCTCAAAGTAGACAATATCATACTATTGTAGAAAGTCGTTATTCCTAACCAGCTTGAGCTCTTTGAGGACTACAAGTTTATCACTTCTGATCAAACCTAAAAACTGATTGTCGTTCTAGAGAACCAAACATTATAGGATGGAGGAGTTGTCGTATGAGATTAGTCGAGGTACGTGTAAGTTGGCCGATAAAAATCATAACCCACCTTATATTCTTCGTCCAGCACCATACCTCTTAAATTTTTCATCCAACAGCGATTTTCCGCTACGTTTTTTACATGATATGTTCGTAATTTTCGAACTTCTTATTTGATAATCTATGATGCAGTATCTGGATGAGAACAAGTCACTGATATTGAAGATTGTTGAGAGCCAAAACTCAGGAAAACTGAATGAATGTGCAGAGTAAGAATTTATGCCTTTTCTAATGATTCCACTTATCATCTGTTTTTCTATGGAAGTGACTGTTTTCCCTTGCATTCGTGCGCTCCGTGCACATCGTAGCTCTCTCGTAGTTAACTGTATAATTCGGCTTATATCCGTATTGTGGCTATGGCTATAATGGTATTCTAAGAAAGAATTGTGAGATCCCACATTAGTTGAAGAGAGTAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTTAAAACTGTGAGGCTAATGGCGATACGTAACGGGCTAAAACGGACAATATCTACTAGTGGTGAGCTTGAGTTGTTACAAGACATTGCATCACTCTTTAAATAGCTGTCATAATGTGAGTTATCTCTCTGATTGATCATTGTTGGATTGATTTTGATTCATGATGATCACAATTCTTCTTGAGTGAGTAACAATGTTAATGGATGAAAATGGATTGATATCTAATCGTTCACCTATTCAGTTGTCTTGTACTTTTAGACGTGATATTGTGACACGATTATTAGTTTGAACTAGATTCAATTATTATGAGATTGAGGACGACTGTAACAGCCAAAACCCACTGTTAGTAGATATTCTCCGCTTTGACCCGTTACGTATCGCCATCAGCTTCACGTTTTTAAAACACGTCCAATAAGGAGAGGTTTCCACTCCCTTATAAGAGATGCTTCATTCCCCCCTCCAACCGATGTGGGATCTCACAATCCACCCCCCTTGGGGGCTTAGCGCTAGCCGATATTGTCCACTTTGGCTCATTACATATCGCCGTCAGCTTTATGATTTTAAAACACGTCTGTTAGGGAGAGGTTTTCACTCTCTCATAACAAATGACAATATCTACTAACGGTGAGTTTAGGTTGTTTCAAAAGTAACTCGCTTATGTTCTTTCTCTGCAGGAATCAAGCAAGGTTACAGAGGAACCTCATGTACTTGGCTGCCATTGCTGATTCTCAACCACAACCAACTGCCATGCATGCCCAGGTATGAACATAAAACCGTTACGAGACGTAAATTTATCCGATCACTAGCTGTGCATTGTTAGAACACCTCGTAATTTCGCTTTCACTCGACCGTAACAACCATTTCCATTACCACCATTGTTCTACAACGCTGTATACGAAACCCGAGTTCTTCAAGGATTTAGATATAGATTTAGGTGCTTAATCCAAGACGTTTTGGTTTTGCCATATTCTCTCCAGTACTCTTCCAGTGGCATAATCCAACCAGGAGGACATTACATTCAGCACCAACAAGCTCAGCAGATGACGCCACAATCACTCATGGCCGCTCGGTCGTCCATGTTGTACACCCAGCAGCCATATTCAACGCTGCAGCAGCAACAAGCTTTGCATAGCCAACTCGGGATGAGCTCGGGAGGAGGCATAGGATTCAACATGCTGCAAAACGACGCAGCCAATGCAGGAGGAGGCAACGGAGGAGGACTTGGAGGAGGAGGAGGAGGCTTTCCAGACTTCGGCCACGGCGGTAGCCTAGGCGGTGGGAGCAAGCAAGAGATGGGAGGAACGGGGTCGGGCGAGGGACGAGGAGGGAGCTCCGGGAGCCATGGCGGTGACGGAGGTGAGACGCTGTACTTGAAATCAGCTGATGATGGGAACTGAAAGCATGGATGAAAAGTAGGTAGAATTAGAAGTTAGGAAGATAAAAGAAGAGAAGAAACCTTCTTGCTTTTAGCTTTATGTGTAAACAATGGTGTGAGGATTCAAACCTCATAAAACTTAAAAACTTTGGTATCC AAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGGTTTTGCTCTGTTCCTTGGAGAGGGAAACAAGCAGCATCTTTGTAGAGAAGAACAGAGAGACCAGAATTCTCCAAAGCCAAAACCCATTTTCTTCTCTCTCTGTGCGTGTGTGTGTGTGTGTGTGCAGAAGCTGCTACAGCTCCCCTGTGTCACTATCACCGTCCAAACCCTTCTCTATTTCAAACCAGGGAAGAACAGAGAACTTTTCTTAAAGCAAAGGGCATCTTGAATCAGCCGTTTCTGTGAAAACCCATCATTCCTATTACTCAAATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCTGCCTATTATCCCAACAACGTCACTACTGATCACATTCAACAGTATCTGGATGAGAACAAGTCACTGATATTGAAGATTGTTGAGAGCCAAAACTCAGGAAAACTGAATGAATGTGCAGAGAATCAAGCAAGGTTACAGAGGAACCTCATGTACTTGGCTGCCATTGCTGATTCTCAACCACAACCAACTGCCATGCATGCCCAGTACTCTTCCAGTGGCATAATCCAACCAGGAGGACATTACATTCAGCACCAACAAGCTCAGCAGATGACGCCACAATCACTCATGGCCGCTCGGTCGTCCATGTTGTACACCCAGCAGCCATATTCAACGCTGCAGCAGCAACAAGCTTTGCATAGCCAACTCGGGATGAGCTCGGGAGGAGGCATAGGATTCAACATGCTGCAAAACGACGCAGCCAATGCAGGAGGAGGCAACGGAGGAGGACTTGGAGGAGGAGGAGGAGGCTTTCCAGACTTCGGCCACGGCGGTAGCCTAGGCGGTGGGAGCAAGCAAGAGATGGGAGGAACGGGGTCGGGCGAGGGACGAGGAGGGAGCTCCGGGAGCCATGGCGGTGACGGAGGTGAGACGCTGTACTTGAAATCAGCTGATGATGGGAACTGAAAGCATGGATGAAAAGTAGGTAGAATTAGAAGTTAGGAAGATAAAAGAAGAGAAGAAACCTTCTTGCTTTTAGCTTTATGTGTAAACAATGGTGTGAGGATTCAAACCTCATAAAACTTAAAAACTTTGGTATCC ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCTGCCTATTATCCCAACAACGTCACTACTGATCACATTCAACAGTATCTGGATGAGAACAAGTCACTGATATTGAAGATTGTTGAGAGCCAAAACTCAGGAAAACTGAATGAATGTGCAGAGAATCAAGCAAGGTTACAGAGGAACCTCATGTACTTGGCTGCCATTGCTGATTCTCAACCACAACCAACTGCCATGCATGCCCAGTACTCTTCCAGTGGCATAATCCAACCAGGAGGACATTACATTCAGCACCAACAAGCTCAGCAGATGACGCCACAATCACTCATGGCCGCTCGGTCGTCCATGTTGTACACCCAGCAGCCATATTCAACGCTGCAGCAGCAACAAGCTTTGCATAGCCAACTCGGGATGAGCTCGGGAGGAGGCATAGGATTCAACATGCTGCAAAACGACGCAGCCAATGCAGGAGGAGGCAACGGAGGAGGACTTGGAGGAGGAGGAGGAGGCTTTCCAGACTTCGGCCACGGCGGTAGCCTAGGCGGTGGGAGCAAGCAAGAGATGGGAGGAACGGGGTCGGGCGAGGGACGAGGAGGGAGCTCCGGGAGCCATGGCGGTGACGGAGGTGAGACGCTGTACTTGAAATCAGCTGATGATGGGAACTGA
BLAST of CmoCh05G012510 vs. Swiss-Prot
Match: GIF1_ARATH (GRF1-interacting factor 1 OS=Arabidopsis thaliana GN=GIF1 PE=1 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 4.7e-61 Identity = 160/234 (68.38%), Postives = 172/234 (73.50%), Query Frame = 1
BLAST of CmoCh05G012510 vs. Swiss-Prot
Match: GIF2_ARATH (GRF1-interacting factor 2 OS=Arabidopsis thaliana GN=GIF2 PE=1 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 7.9e-16 Identity = 84/207 (40.58%), Postives = 113/207 (54.59%), Query Frame = 1
BLAST of CmoCh05G012510 vs. Swiss-Prot
Match: GIF3_ARATH (GRF1-interacting factor 3 OS=Arabidopsis thaliana GN=GIF3 PE=1 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 7.4e-14 Identity = 87/236 (36.86%), Postives = 116/236 (49.15%), Query Frame = 1
BLAST of CmoCh05G012510 vs. Swiss-Prot
Match: S18L2_HUMAN (SS18-like protein 2 OS=Homo sapiens GN=SS18L2 PE=3 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 6.7e-07 Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1
BLAST of CmoCh05G012510 vs. Swiss-Prot
Match: CREST_XENLA (Calcium-responsive transactivator OS=Xenopus laevis GN=ss18l1 PE=2 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 5.7e-06 Identity = 39/109 (35.78%), Postives = 50/109 (45.87%), Query Frame = 1
BLAST of CmoCh05G012510 vs. TrEMBL
Match: A0A0A0LL92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010170 PE=4 SV=1) HSP 1 Score: 361.3 bits (926), Expect = 8.3e-97 Identity = 206/227 (90.75%), Postives = 211/227 (92.95%), Query Frame = 1
BLAST of CmoCh05G012510 vs. TrEMBL
Match: A0A061F2S4_THECC (SSXT family protein isoform 1 OS=Theobroma cacao GN=TCM_026261 PE=4 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 2.4e-83 Identity = 183/229 (79.91%), Postives = 197/229 (86.03%), Query Frame = 1
BLAST of CmoCh05G012510 vs. TrEMBL
Match: A0A061F252_THECC (SSXT family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_026261 PE=4 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 5.8e-82 Identity = 183/230 (79.57%), Postives = 197/230 (85.65%), Query Frame = 1
BLAST of CmoCh05G012510 vs. TrEMBL
Match: B9S7I1_RICCO (Synovial sarcoma associated ss18 protein, putative OS=Ricinus communis GN=RCOM_0608010 PE=4 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 7.6e-82 Identity = 179/223 (80.27%), Postives = 195/223 (87.44%), Query Frame = 1
BLAST of CmoCh05G012510 vs. TrEMBL
Match: A0A067JIJ5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23525 PE=4 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 1.7e-78 Identity = 177/221 (80.09%), Postives = 188/221 (85.07%), Query Frame = 1
BLAST of CmoCh05G012510 vs. TAIR10
Match: AT5G28640.1 (AT5G28640.1 SSXT family protein) HSP 1 Score: 235.7 bits (600), Expect = 2.7e-62 Identity = 160/234 (68.38%), Postives = 172/234 (73.50%), Query Frame = 1
BLAST of CmoCh05G012510 vs. TAIR10
Match: AT4G00850.1 (AT4G00850.1 GRF1-interacting factor 3) HSP 1 Score: 79.0 bits (193), Expect = 4.2e-15 Identity = 87/236 (36.86%), Postives = 116/236 (49.15%), Query Frame = 1
BLAST of CmoCh05G012510 vs. TAIR10
Match: AT1G01160.2 (AT1G01160.2 GRF1-interacting factor 2) HSP 1 Score: 68.2 bits (165), Expect = 7.4e-12 Identity = 84/241 (34.85%), Postives = 113/241 (46.89%), Query Frame = 1
BLAST of CmoCh05G012510 vs. NCBI nr
Match: gi|449442961|ref|XP_004139249.1| (PREDICTED: GRF1-interacting factor 1 [Cucumis sativus]) HSP 1 Score: 361.3 bits (926), Expect = 1.2e-96 Identity = 206/227 (90.75%), Postives = 211/227 (92.95%), Query Frame = 1
BLAST of CmoCh05G012510 vs. NCBI nr
Match: gi|659070713|ref|XP_008456296.1| (PREDICTED: GRF1-interacting factor 1 [Cucumis melo]) HSP 1 Score: 359.8 bits (922), Expect = 3.5e-96 Identity = 205/227 (90.31%), Postives = 210/227 (92.51%), Query Frame = 1
BLAST of CmoCh05G012510 vs. NCBI nr
Match: gi|590642355|ref|XP_007030495.1| (SSXT family protein isoform 1 [Theobroma cacao]) HSP 1 Score: 316.6 bits (810), Expect = 3.4e-83 Identity = 183/229 (79.91%), Postives = 197/229 (86.03%), Query Frame = 1
BLAST of CmoCh05G012510 vs. NCBI nr
Match: gi|590642358|ref|XP_007030496.1| (SSXT family protein isoform 2, partial [Theobroma cacao]) HSP 1 Score: 312.0 bits (798), Expect = 8.3e-82 Identity = 183/230 (79.57%), Postives = 197/230 (85.65%), Query Frame = 1
BLAST of CmoCh05G012510 vs. NCBI nr
Match: gi|255561883|ref|XP_002521950.1| (PREDICTED: GRF1-interacting factor 1 [Ricinus communis]) HSP 1 Score: 311.6 bits (797), Expect = 1.1e-81 Identity = 179/223 (80.27%), Postives = 195/223 (87.44%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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