CmoCh04G026690 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G026690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-binding protein RZ-1
LocationCmo_Chr04 : 19415323 .. 19418669 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCGAAGGACGAGTACCGAATATTTGTTGGAGGACTCTCGTGGAACGTGTCGGAGCGTGAGCTTGAGAACGCTTTCAGCCGCTACGGCAAAATAATTGAAACTCAGGTAACTTTCGTCCCTTCCCCCGTTTTTTGTGTGCCTCCTATTTGCTTGTTGGTTGAATGTCATGGTGAAAAGGAAATGTGGCTTGTACTCTGAAGAAAAGTCTAAATGATTCGGCATGCGTGAGGTAGAAAATATGACAATGTAAATGCCGTTTTATGTCGAGGACGTTTTTTGAGCGTTTTTATGATGAAAATCCCTGCTATGATTTTTACGACATTCGTAATAGGTTGTCGGCTTTCCCTTTCCACAATTCATGCCAAATACCAATGCTATTTTGTTAGTTGCAGAGTCCCTCCATTTGCGTCTGCCATGGTTTTAATACGGTGTATTTATAATATCTCTAGTCTATCCTATGTCCTTTATTTATTTTTTATACGTTAGTTGAGCCATCAGTATGCATTGATTTATTTAAGCCATATATGAATCAGAATACTTCAGATGAGTTTTAACTACACGATTATAGCTAATAATTTGTTTCAGGCTTTCTCTTTCTTACCGTCCTTTGATCATTTGTTTTGTTGAATATGGTCCAGGCAGTCAGCTTAATGCTGAATACATGGGTCTGTTCGCACATTATCTGCTGAATTCTTACTTAATAGGAGAAATGGTTAATAGACAAGAAATCCTATTCATCAGTATACATATATTGCAAGAAATTGCTTGGAAACTGACAGTATTTTTTAAGAAAAGCATTTTCAGAATAATGTTTCAGAAAGGATGCTCAGTTCATTCTCTTAGGATATCTGATGAGACGTTTCTTCTGTGTGGTTGATTTTGTGGATGAGAAATCGCAGCTAGCCCAATTTGTGAAAATTGTTCAAGACACTTCGCTTCAAAAACTGAAATTTAATGTTCAACATACGGTTTGCTGATGTAGTTTCCTACTCGTCAGAGTAAAAGATTGGGTAATAATTGTATTTCGTGGAGATGTATCTGCTGCCACGTGTTGTTAGTCGCCTCAATTCCTCGACAATCCACAGATTGAATTTGGGTATAAGTTGTTGGATTGAGCAGATGCTTCTAGAACTCCAAATATTCAGTTTTTTTTTGTTCATTCTACACCGGGCCTTCTATCCTAAAAGATTTTGCAAAGTATTCCATACCTAATCTCTGCTCTTTTTAGTTTCAAGAGCATTTAACTTGATTTGTATTGCCTAATTCAGCTACAGAGTTTGGTTATGTTCTTGCTCAGTCAGTATAAATAGTGAGTACATGCATTCAATAGGGAATGCAGTATCGTCTGTCATGCTGTTGGTTGCTGTGTAAGGTTCGTGCTTGGCACTGTGCAAAATTTGGAATTGGAACTTACTATACCTAAACTAGGATGTACTGTTCTTGACTTCTAGTGCTTCCGTATGTTCATGATTTTTTGGGTGCTTTGGCATGGAAGGGCAGGCTGTTGGTAAAATATTTTAAAGTTAGTTCACCAGAGAAAATTTCAGACACTGTAATTTCAGTTGTAAACCATCTTTCACCAAATCTATAAACACACCCATAATGACAAAAAAGGATAATAATAATATAACTACCACATATTTTGGCGCACACTGGAGCTTCAGGTGCAGTACCTTTTTCATTTGTCATTACATCCTGCTGCATGCCAGTATTCTTGGGTATAAGTGACCTATCTGGCTCCACAGTTAAATTATGCTGGTTGTTCGGTAAATTATAAAGGTGGAAACCCAGTTTACAGCATAAGATAAGAATAGCATCTAAAGTGCGGAAAGTTTTTAATGCACTGTTGTACTTTGTTTACTGTGGCATTGGATTGGGTGGTAGCGTGACACAGAGAATCATTATGGCAAGAAATTGTATCTCCCCTAGATTTTTCTTCTCAATTTATTGGTTTCTAGACTCTAGGGTGATTTATATGACTCGGTTATGAACAATGGAATATTGCCTGAATGCTACAATTAGTTAAGGCTACGGAGTGGTAGTGGAGTTATTTCAGTAACCAGTAGAAGGGTTGCCTTGGGTGGTCATCTCAGTGGGAGATATTCTCTTTAACTTTTAGAGCTTAAGATTCTGACTTTATGATGGGTCATTTCCTAATTTGCACCCAAAGAGGGTAGTCGAGGTCAAAGTTGCTCTTTAAATGATAGATTCGAGGTGTTGAAGACAGCTTATCTAACAGTGTTCAAGTTGTTGGCAACCTTGCCAGGGCTTTGAAGAGAAATCCTTCCAAGTATATCATTTAAATTTGCTACTTAAATGATTTGCTTGGAAGGGAAAGTAAGTTATCAGAATTTTCGATCGTTTTCTTCGAAGTCTATTCCTTGCACAGCTATCTTGCATAACTATAAAACATTTTCGTAGTCTATGTTGGAATTGAGCTGTATTTATTAATATTTGCATGAGATTCTCTTGTGATGTTTATGTAGATCATGTTAGAACGAGATACAGGTCGTCCTCGTGGGTTTGGTTTTATTACCTTTGCAGATCGTCGAGGGATGGATGATGCAATAAGAGAGATGCATGGGCATGAATTTGGTGAGCGGATTATCTCAGTAAATAAAGCTGAACCCAAGATGGAGGGAGATGATAGAGAGCCAGGTTTCAGGGGAGGAGGCTATTCATCTGGTGGTAGGGCTAGTTTTGGGAGAGGAGGAGATAGATCTGTGGGGCAAGATGAATGCTTCAAGTGTGGACGCCCAGGGCATTGGGCACGAGACTGTCCTTCAGCCGGAGGTGGACGTGGTAGGGGTAGAGGTTCATTTTCATCGCGTTCTCGATTTGATGGTGATAGTCGTGGGGATCGTTTTGGAGGAGATCGTGACCGGTATGTCGATGACCGTTATGATGGAGGGCGAGATGGGGGGCGCTACGGTGATAGAGATCGTTTTGACCGTAGGGATGACAAGTATGGAAGTCGAGACCGCTATTTTGACGACAGGTAGTTCTGATTGTGATAAATGATCACCCATTTACATATCTTCCGAAGTATGATTTGATTGCTTTACATCTGCGATTGTGTATGCAAACTCTGCAGGTACCCATCTGCTGGAGATCGTTTTACAGGTGGTGATCGGTATGATGTTAGTGATCGATATCCTCAAAATGGCTACGTCAAAGACAGAGGTGGCTACGATAGGGATATTGGTCCCAGGAGTGGCAGTGATAGGTATGGTACTGGAGGAGGTCCTGGCCGTTACGAGGGAAGAAGTTACAGAGATAGGCCAGGCCCTTACGACCGCCCAAGCAGGGGAGGACGACCGTCTTCCTACGAGCGCTATTAA

mRNA sequence

ATGGCTGCGAAGGACGAGTACCGAATATTTGTTGGAGGACTCTCGTGGAACGTGTCGGAGCGTGAGCTTGAGAACGCTTTCAGCCGCTACGGCAAAATAATTGAAACTCAGATCATGTTAGAACGAGATACAGGTCGTCCTCGTGGGTTTGGTTTTATTACCTTTGCAGATCGTCGAGGGATGGATGATGCAATAAGAGAGATGCATGGGCATGAATTTGGTGAGCGGATTATCTCAGTAAATAAAGCTGAACCCAAGATGGAGGGAGATGATAGAGAGCCAGGTTTCAGGGGAGGAGGCTATTCATCTGGTGGTAGGGCTAGTTTTGGGAGAGGAGGAGATAGATCTGTGGGGCAAGATGAATGCTTCAAGTGTGGACGCCCAGGGCATTGGGCACGAGACTGTCCTTCAGCCGGAGGTGGACGTGGTAGGGGTAGAGGTTCATTTTCATCGCGTTCTCGATTTGATGGTGATAGTCGTGGGGATCGTTTTGGAGGAGATCGTGACCGGTATGTCGATGACCGTTATGATGGAGGGCGAGATGGGGGGCGCTACGGTGATAGAGATCGTTTTGACCGTAGGGATGACAAGTATGGAAGTCGAGACCGCTATTTTGACGACAGGTACCCATCTGCTGGAGATCGTTTTACAGGTGGTGATCGGTATGATGTTAGTGATCGATATCCTCAAAATGGCTACGTCAAAGACAGAGGTGGCTACGATAGGGATATTGGTCCCAGGAGTGGCAGTGATAGGTATGGTACTGGAGGAGGTCCTGGCCGTTACGAGGGAAGAAGTTACAGAGATAGGCCAGGCCCTTACGACCGCCCAAGCAGGGGAGGACGACCGTCTTCCTACGAGCGCTATTAA

Coding sequence (CDS)

ATGGCTGCGAAGGACGAGTACCGAATATTTGTTGGAGGACTCTCGTGGAACGTGTCGGAGCGTGAGCTTGAGAACGCTTTCAGCCGCTACGGCAAAATAATTGAAACTCAGATCATGTTAGAACGAGATACAGGTCGTCCTCGTGGGTTTGGTTTTATTACCTTTGCAGATCGTCGAGGGATGGATGATGCAATAAGAGAGATGCATGGGCATGAATTTGGTGAGCGGATTATCTCAGTAAATAAAGCTGAACCCAAGATGGAGGGAGATGATAGAGAGCCAGGTTTCAGGGGAGGAGGCTATTCATCTGGTGGTAGGGCTAGTTTTGGGAGAGGAGGAGATAGATCTGTGGGGCAAGATGAATGCTTCAAGTGTGGACGCCCAGGGCATTGGGCACGAGACTGTCCTTCAGCCGGAGGTGGACGTGGTAGGGGTAGAGGTTCATTTTCATCGCGTTCTCGATTTGATGGTGATAGTCGTGGGGATCGTTTTGGAGGAGATCGTGACCGGTATGTCGATGACCGTTATGATGGAGGGCGAGATGGGGGGCGCTACGGTGATAGAGATCGTTTTGACCGTAGGGATGACAAGTATGGAAGTCGAGACCGCTATTTTGACGACAGGTACCCATCTGCTGGAGATCGTTTTACAGGTGGTGATCGGTATGATGTTAGTGATCGATATCCTCAAAATGGCTACGTCAAAGACAGAGGTGGCTACGATAGGGATATTGGTCCCAGGAGTGGCAGTGATAGGTATGGTACTGGAGGAGGTCCTGGCCGTTACGAGGGAAGAAGTTACAGAGATAGGCCAGGCCCTTACGACCGCCCAAGCAGGGGAGGACGACCGTCTTCCTACGAGCGCTATTAA
Homology
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BLAST of CmoCh04G026690 vs. Swiss-Prot
Match: RZ1C_ARATH (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.5e-80
Identity = 186/306 (60.78%), Postives = 214/306 (69.93%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MAAK+  RIFVGGLS  V++R+LE AFSR+G I++ QIMLERDTGR RGFGFITFADRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREP-GFRGG---GYSSGGRASFGRGGDRS 120
           MD++IREMHG +FG+R+ISVN+AEPK+  DD E  G RGG   GYS  G+ SFG GG   
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 --VGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDG--DSRGDRFGG-----D 180
             VG+DECFKCGR GHWARDCPSAGGGRG   G FSSR+   G  D R DR+       D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYD-VSD 240
           R+RY+DDRYDG     RYG RDRFD R + Y  RDRY  DRY +  DRF GGDRY   SD
Sbjct: 181 RERYIDDRYDG---AARYGARDRFDSR-EAYIPRDRYASDRYAAPADRFAGGDRYSRGSD 240

Query: 241 RYPQNGYVKDRGGYDRDIGPRSGSDRYGTG--GGP---GRYEGRSYRDRPG-PYDRPSRG 287
           RYP   Y K R  ++RDI P +GSDRYG G  GGP   G  EGR +R R G PY+RPSR 
Sbjct: 241 RYPPGSYDKAR-SFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRS 300

[Close]
BLAST of CmoCh04G026690 vs. Swiss-Prot
Match: RZ1B_ARATH (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.2e-72
Identity = 170/297 (57.24%), Postives = 195/297 (65.66%), Query Frame = 1 

Query: 6   EYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRGMDDAI 65
           E RIFVGGLSW+V+ER+LE+ F RYGKI E QIM+ RDTGRPRGFGFITF DRRG DDAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  REMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQDECFKC 125
           + MHG E G ++ISVNKAEPK+ G+D +   +GGGYSS G+ +          +DECFKC
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDECFKC 130

Query: 126 GRPGHWARDCPSAGGGRGRGRGSFSSRSRF-DGDSRGDRFGG-----------DRDRYVD 185
            RPGHWARDCPS G  R R R   + RSR  D D   DR+G            + DRY+D
Sbjct: 131 RRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYMD 190

Query: 186 DRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGY 245
            R D  RDGGRY  RDRFD   DKY  RD Y  +RY   GDRF   DRY + + + +N Y
Sbjct: 191 GRRD--RDGGRYSYRDRFDS-GDKYEPRDHYPFERYAPPGDRFVS-DRYGMPEHHLENEY 250

Query: 246 VKDRGGYDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSR-GGRPSSYERY 290
                 YDRD   R  SDRYG  G P R EGR YR RPGPYDRPSR GGRPSSYER+
Sbjct: 251 RGRERSYDRDRYARDTSDRYGDMG-PIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of CmoCh04G026690 vs. Swiss-Prot
Match: RZ1A_ARATH (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-34
Identity = 119/288 (41.32%), Postives = 155/288 (53.82%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           M+   EYR F+GGL+W  S+R L +AF +YG ++E +++L++ +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDRE-PGFRGG--GYSSG-GRASFGRGGDRS 120
           MD+AI  M+G +   R I+V+KA+P   G  R+  G RG   GY     R S GRGG   
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG-- 120

Query: 121 VGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRY--VDD 180
               +CFKCG+PGH+AR+CPS     G GR S          S+ DR+    DRY   DD
Sbjct: 121 ----DCFKCGKPGHFARECPSESSRDGGGRFS----------SKDDRYSSKDDRYGAKDD 180

Query: 181 RYDGGRDGGRYGDR-DRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGY 240
           RY    D  RYG + DR+  +DD+Y S+    DDRY   G R  GG RY   DR  +   
Sbjct: 181 RYGAKED--RYGAKDDRYSSKDDRYSSK----DDRY---GSRDGGGSRYG-PDRSGERA- 240

Query: 241 VKDRGGYDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGG 282
               GG  RD G R         G PG       R    PYDRP  GG
Sbjct: 241 ----GGRSRDGGSR---------GAPG-----GERHSRAPYDRPRAGG 243

[Close]
BLAST of CmoCh04G026690 vs. Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-23
Identity = 73/171 (42.69%), Postives = 98/171 (57.31%), Query Frame = 1 

Query: 1   MAAKD-EYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRR 60
           MA+ D EYR FVGGL+W   +R LE AFS+YG++++++I+ +R+TGR RGFGF+TF D +
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  GMDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQ 120
            M DAI  M+G +   R I+VN+A+ +  G        GGGY SGG   +G GG    G 
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGGGGYGGG 120

Query: 121 DECFKCGRPGHWARDCPSAGGG----RGRGRGSFSSRSRFDGDSRGDRFGG 167
                 GR G +     S GGG    RG G G +    R DG   G  +GG
Sbjct: 121 ------GREGGY-----SGGGGGYSSRGGGGGGYGGGGRRDG-GEGGGYGG 159

[Close]
BLAST of CmoCh04G026690 vs. Swiss-Prot
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21
Identity = 78/188 (41.49%), Postives = 103/188 (54.79%), Query Frame = 1 

Query: 1   MAAKD-EYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRR 60
           MA+ D EYR FVGGL+W   +R LE AF++YG +I+++I+ +R+TGR RGFGF+TF D +
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  GMDDAIREMHGHEFGERIISVNKAEPK-MEGDDREPGFRGGGYSSGGRASFGRGGDRSVG 120
            M DAI  M+G +   R I+VN+A+ +   G     G  GGGY SGG   +  GG    G
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 QDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDG 180
                     G   R+    GGG   G G +SSR        G  +GG R R     Y G
Sbjct: 121 ----------GGGRRE---GGGGYSGGGGGYSSRG-----GGGGSYGGGR-REGGGGYGG 168

Query: 181 GRDGGRYG 187
           G +GG YG
Sbjct: 181 G-EGGGYG 168

[Close]
BLAST of CmoCh04G026690 vs. TrEMBL
Match: A0A0A0LQB5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G324460 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 4.2e-141
Identity = 258/289 (89.27%), Postives = 269/289 (93.08%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MA+KDEYRIFVGGLSWN+SER+LENAF R+GK++ETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHG E GERIISVNKAEPKMEGDD E GFRGGGYSSGGRASFGRG DRSVGQD
Sbjct: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGR 180
           ECFKCGRPGHWARDCPS GGGRG GRGSFSSRSRFD D RGDRFGGDRDRYVD+RY    
Sbjct: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERY---- 180

Query: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGGY 240
           +GGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTG DRYDVSDRYPQNGYVKDR  Y
Sbjct: 181 NGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDR-VY 240

Query: 241 DRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 290
           DRDIGPRSGSDRYG+ GGPGR+EGRSYRDR GPYDRPSR GRPSSY+RY
Sbjct: 241 DRDIGPRSGSDRYGS-GGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 283

[Close]
BLAST of CmoCh04G026690 vs. TrEMBL
Match: F6HNC0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05080 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 4.9e-113
Identity = 218/289 (75.43%), Postives = 248/289 (85.81%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+E RIFVGGLSW+V+ER+LEN FSR+GKIIE+QIMLERDTGRPRGFGFIT+ADRRG
Sbjct: 1   MAGKEENRIFVGGLSWDVTERQLENTFSRFGKIIESQIMLERDTGRPRGFGFITYADRRG 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120
           M+DAIREMHG +FG+RIISVNKA+PKM G+D + G+ GG YSSGGR S+G GGDRS GQD
Sbjct: 61  MEDAIREMHGRDFGDRIISVNKAQPKM-GEDPDHGYNGG-YSSGGRGSYG-GGDRSAGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGR 180
           +CFKCGRPGHWARDCPS+GGGRGRG   F SRSRF G  RGDRFGG+RDRY++DRY    
Sbjct: 121 DCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRFSG-GRGDRFGGERDRYMEDRY---- 180

Query: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGGY 240
           DGGRYGDRDRF+ RD+KYG+RDRY +DRY  +GDRF+ GDRY  SDRYPQNGY KDR GY
Sbjct: 181 DGGRYGDRDRFESRDNKYGTRDRYVNDRYAPSGDRFS-GDRYGGSDRYPQNGYGKDR-GY 240

Query: 241 DRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 290
           DRD  PR G DRY  GGG  R EGRSYR+RPGPYDRP+RGGRPSS++RY
Sbjct: 241 DRDAAPRGGGDRY-AGGGSARNEGRSYRNRPGPYDRPNRGGRPSSFDRY 278

[Close]
BLAST of CmoCh04G026690 vs. TrEMBL
Match: B9HUL0_POPTR (Glycine-rich RNA-binding family protein OS=Populus trichocarpa GN=POPTR_0010s23550g PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 1.9e-109
Identity = 212/290 (73.10%), Postives = 241/290 (83.10%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+E RIFVGGLSW+++ER+LENAF R+GKI+E+Q+MLERDTGRPRGFGFITFADRR 
Sbjct: 1   MAGKEENRIFVGGLSWDITERQLENAFDRFGKIVESQVMLERDTGRPRGFGFITFADRRA 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHG +FG+R+ISVNKA+PK+ GDD + G+R GGYS+G R  +G GGDR  GQD
Sbjct: 61  MDDAIREMHGRDFGDRVISVNKAQPKIGGDDSDHGYR-GGYSTGSRGGYG-GGDRPAGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDG-DSRGDRFGGDRDRYVDDRYDGG 180
           ECFKCGR GHWARDCPSA GGRG G G  SSRSRF G   RGDRFGGDRDRY+DDRY   
Sbjct: 121 ECFKCGRSGHWARDCPSA-GGRGGGGGLISSRSRFGGAGDRGDRFGGDRDRYIDDRY--- 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGG 240
            DGGRYGD+DRFD RD+KYG RDRY  DRYP  GDRF+ GDRY  SDRY QNGY KD+ G
Sbjct: 181 -DGGRYGDKDRFDSRDNKYGGRDRYASDRYPPNGDRFS-GDRYGGSDRYAQNGYGKDK-G 240

Query: 241 YDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 290
           YDRD+GPR G+DRYG+ GGP R +  SYR+RP PYDRPSRGG PSS+ERY
Sbjct: 241 YDRDVGPRGGNDRYGS-GGPQRNDRSSYRNRPAPYDRPSRGGHPSSFERY 280

[Close]
BLAST of CmoCh04G026690 vs. TrEMBL
Match: M5XLS7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009799mg PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 6.8e-107
Identity = 215/291 (73.88%), Postives = 240/291 (82.47%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+++RIFVGGLSW+V+ER+LE+AF R+GK+ E QIM+ERDT RPRGFGFITF DRR 
Sbjct: 1   MAGKEDFRIFVGGLSWDVTERQLESAFQRFGKVHEAQIMMERDTNRPRGFGFITFGDRRA 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEG--DDREPGFRGGGYSSGGRASFGRGGDRSVG 120
           M+DAIREMHG E G+RIISVNKA+PKM G  +D + G+RGG YS+GGR ++G GGDR VG
Sbjct: 61  MEDAIREMHGRELGDRIISVNKAQPKMGGGGEDLDHGYRGG-YSTGGRRNYG-GGDRPVG 120

Query: 121 QDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDG 180
           QDECFKCGRPGHWARDCPSAGGGRG G  SFSS SRF    RGDRFGGDRDRYVDDRYDG
Sbjct: 121 QDECFKCGRPGHWARDCPSAGGGRGGG--SFSSHSRFGAGGRGDRFGGDRDRYVDDRYDG 180

Query: 181 GRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRG 240
           GR    YG+RDRFD R+DKYGSRDRY  DRYP AGDRF   DRY  SDRYPQNGY KDRG
Sbjct: 181 GR----YGERDRFDSREDKYGSRDRYVSDRYP-AGDRFAS-DRYGGSDRYPQNGYGKDRG 240

Query: 241 GYDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 290
            YDRD   R GSDRYG+GG P R EG +YR R GPYDRPSRGGRPSS++RY
Sbjct: 241 -YDRDA--RGGSDRYGSGG-PARDEGGNYRSRAGPYDRPSRGGRPSSFDRY 277

[Close]
BLAST of CmoCh04G026690 vs. TrEMBL
Match: A0A067EAL8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023559mg PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.5e-106
Identity = 211/290 (72.76%), Postives = 235/290 (81.03%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDE RIFVGGLSWNV+ER+LENAF R+GKIIE QIMLERD+GRPRGFGFIT+ADRR 
Sbjct: 1   MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHG EFG+R+ISVNKA+PKM G+  + G+RGGGYSSGGR S+G   DR  GQD
Sbjct: 61  MDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHGYRGGGYSSGGRGSYG--ADRPGGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDS-RGDRFGGDRDRYVDDRYDGG 180
           +CFKCGRPGHWARDCPSA GGRG   GSFSSRSRF G   RGD  GG RDRY+DDRYDGG
Sbjct: 121 DCFKCGRPGHWARDCPSAVGGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDDRYDGG 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGG 240
           R    YGDRDR+D +D KYGSRDRY  DRYP AGDR  G DRY  SDRYP NGY K+RG 
Sbjct: 181 R----YGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAG-DRYGGSDRYPVNGYGKERG- 240

Query: 241 YDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 290
           Y+RD+G R+GSDRY +GG P R +GR YR R  PYDRPSRG RP S++RY
Sbjct: 241 YERDVGARAGSDRYASGG-PARDDGRGYRSRAAPYDRPSRGDRP-SFDRY 280

[Close]
BLAST of CmoCh04G026690 vs. TAIR10
Match: AT5G04280.1 (AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 299.7 bits (766), Expect = 2.0e-81
Identity = 186/306 (60.78%), Postives = 214/306 (69.93%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MAAK+  RIFVGGLS  V++R+LE AFSR+G I++ QIMLERDTGR RGFGFITFADRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREP-GFRGG---GYSSGGRASFGRGGDRS 120
           MD++IREMHG +FG+R+ISVN+AEPK+  DD E  G RGG   GYS  G+ SFG GG   
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 --VGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDG--DSRGDRFGG-----D 180
             VG+DECFKCGR GHWARDCPSAGGGRG   G FSSR+   G  D R DR+       D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYD-VSD 240
           R+RY+DDRYDG     RYG RDRFD R + Y  RDRY  DRY +  DRF GGDRY   SD
Sbjct: 181 RERYIDDRYDG---AARYGARDRFDSR-EAYIPRDRYASDRYAAPADRFAGGDRYSRGSD 240

Query: 241 RYPQNGYVKDRGGYDRDIGPRSGSDRYGTG--GGP---GRYEGRSYRDRPG-PYDRPSRG 287
           RYP   Y K R  ++RDI P +GSDRYG G  GGP   G  EGR +R R G PY+RPSR 
Sbjct: 241 RYPPGSYDKAR-SFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRS 300

[Close]
BLAST of CmoCh04G026690 vs. TAIR10
Match: AT1G60650.1 (AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 274.6 bits (701), Expect = 6.8e-74
Identity = 170/297 (57.24%), Postives = 195/297 (65.66%), Query Frame = 1 

Query: 6   EYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRGMDDAI 65
           E RIFVGGLSW+V+ER+LE+ F RYGKI E QIM+ RDTGRPRGFGFITF DRRG DDAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  REMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQDECFKC 125
           + MHG E G ++ISVNKAEPK+ G+D +   +GGGYSS G+ +          +DECFKC
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDECFKC 130

Query: 126 GRPGHWARDCPSAGGGRGRGRGSFSSRSRF-DGDSRGDRFGG-----------DRDRYVD 185
            RPGHWARDCPS G  R R R   + RSR  D D   DR+G            + DRY+D
Sbjct: 131 RRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYMD 190

Query: 186 DRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGY 245
            R D  RDGGRY  RDRFD   DKY  RD Y  +RY   GDRF   DRY + + + +N Y
Sbjct: 191 GRRD--RDGGRYSYRDRFDS-GDKYEPRDHYPFERYAPPGDRFVS-DRYGMPEHHLENEY 250

Query: 246 VKDRGGYDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSR-GGRPSSYERY 290
                 YDRD   R  SDRYG  G P R EGR YR RPGPYDRPSR GGRPSSYER+
Sbjct: 251 RGRERSYDRDRYARDTSDRYGDMG-PIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of CmoCh04G026690 vs. TAIR10
Match: AT3G26420.1 (AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 148.3 bits (373), Expect = 7.4e-36
Identity = 119/288 (41.32%), Postives = 155/288 (53.82%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           M+   EYR F+GGL+W  S+R L +AF +YG ++E +++L++ +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDRE-PGFRGG--GYSSG-GRASFGRGGDRS 120
           MD+AI  M+G +   R I+V+KA+P   G  R+  G RG   GY     R S GRGG   
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG-- 120

Query: 121 VGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRY--VDD 180
               +CFKCG+PGH+AR+CPS     G GR S          S+ DR+    DRY   DD
Sbjct: 121 ----DCFKCGKPGHFARECPSESSRDGGGRFS----------SKDDRYSSKDDRYGAKDD 180

Query: 181 RYDGGRDGGRYGDR-DRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGY 240
           RY    D  RYG + DR+  +DD+Y S+    DDRY   G R  GG RY   DR  +   
Sbjct: 181 RYGAKED--RYGAKDDRYSSKDDRYSSK----DDRY---GSRDGGGSRYG-PDRSGERA- 240

Query: 241 VKDRGGYDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGG 282
               GG  RD G R         G PG       R    PYDRP  GG
Sbjct: 241 ----GGRSRDGGSR---------GAPG-----GERHSRAPYDRPRAGG 243

[Close]
BLAST of CmoCh04G026690 vs. TAIR10
Match: AT2G21660.1 (AT2G21660.1 cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 104.8 bits (260), Expect = 9.3e-23
Identity = 78/188 (41.49%), Postives = 103/188 (54.79%), Query Frame = 1 

Query: 1   MAAKD-EYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRR 60
           MA+ D EYR FVGGL+W   +R LE AF++YG +I+++I+ +R+TGR RGFGF+TF D +
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  GMDDAIREMHGHEFGERIISVNKAEPK-MEGDDREPGFRGGGYSSGGRASFGRGGDRSVG 120
            M DAI  M+G +   R I+VN+A+ +   G     G  GGGY SGG   +  GG    G
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 QDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDG 180
                     G   R+    GGG   G G +SSR        G  +GG R R     Y G
Sbjct: 121 ----------GGGRRE---GGGGYSGGGGGYSSRG-----GGGGSYGGGR-REGGGGYGG 168

Query: 181 GRDGGRYG 187
           G +GG YG
Sbjct: 181 G-EGGGYG 168

[Close]
BLAST of CmoCh04G026690 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-21
Identity = 72/182 (39.56%), Postives = 97/182 (53.30%), Query Frame = 1 

Query: 6   EYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRGMDDAI 65
           EYR FVGGL+W  ++ +L+  FS++G +I+++I+ +R++GR RGFGF+TF D + M DAI
Sbjct: 5   EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64

Query: 66  REMHGHEFGERIISVNKAEPK-MEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQDECFK 125
            EM+G E   R+I+VN+A+ +   G     G  GGGY SGG   +  GG           
Sbjct: 65  EEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGY------- 124

Query: 126 CGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGRDGGR 185
                       S GGG G  R S    S   G  RG   GG R+      Y GG DGG 
Sbjct: 125 ------------SGGGGGGYERRSGGYGSGGGGGGRGYGGGGRRE---GGGYGGG-DGGS 163

Query: 186 YG 187
           YG
Sbjct: 185 YG 163

[Close]
BLAST of CmoCh04G026690 vs. NCBI nr
Match: gi|449465308|ref|XP_004150370.1| (PREDICTED: glycine-rich RNA-binding protein RZ1C-like [Cucumis sativus])

HSP 1 Score: 508.8 bits (1309), Expect = 6.1e-141
Identity = 258/289 (89.27%), Postives = 269/289 (93.08%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MA+KDEYRIFVGGLSWN+SER+LENAF R+GK++ETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHG E GERIISVNKAEPKMEGDD E GFRGGGYSSGGRASFGRG DRSVGQD
Sbjct: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGR 180
           ECFKCGRPGHWARDCPS GGGRG GRGSFSSRSRFD D RGDRFGGDRDRYVD+RY    
Sbjct: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERY---- 180

Query: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGGY 240
           +GGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTG DRYDVSDRYPQNGYVKDR  Y
Sbjct: 181 NGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDR-VY 240

Query: 241 DRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 290
           DRDIGPRSGSDRYG+ GGPGR+EGRSYRDR GPYDRPSR GRPSSY+RY
Sbjct: 241 DRDIGPRSGSDRYGS-GGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 283

[Close]
BLAST of CmoCh04G026690 vs. NCBI nr
Match: gi|731412387|ref|XP_002267178.2| (PREDICTED: glycine-rich RNA-binding protein RZ1C [Vitis vinifera])

HSP 1 Score: 415.6 bits (1067), Expect = 7.0e-113
Identity = 218/289 (75.43%), Postives = 248/289 (85.81%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+E RIFVGGLSW+V+ER+LEN FSR+GKIIE+QIMLERDTGRPRGFGFIT+ADRRG
Sbjct: 61  MAGKEENRIFVGGLSWDVTERQLENTFSRFGKIIESQIMLERDTGRPRGFGFITYADRRG 120

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120
           M+DAIREMHG +FG+RIISVNKA+PKM G+D + G+ GG YSSGGR S+G GGDRS GQD
Sbjct: 121 MEDAIREMHGRDFGDRIISVNKAQPKM-GEDPDHGYNGG-YSSGGRGSYG-GGDRSAGQD 180

Query: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGR 180
           +CFKCGRPGHWARDCPS+GGGRGRG   F SRSRF G  RGDRFGG+RDRY++DRY    
Sbjct: 181 DCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRFSG-GRGDRFGGERDRYMEDRY---- 240

Query: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGGY 240
           DGGRYGDRDRF+ RD+KYG+RDRY +DRY  +GDRF+ GDRY  SDRYPQNGY KDR GY
Sbjct: 241 DGGRYGDRDRFESRDNKYGTRDRYVNDRYAPSGDRFS-GDRYGGSDRYPQNGYGKDR-GY 300

Query: 241 DRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 290
           DRD  PR G DRY  GGG  R EGRSYR+RPGPYDRP+RGGRPSS++RY
Sbjct: 301 DRDAAPRGGGDRY-AGGGSARNEGRSYRNRPGPYDRPNRGGRPSSFDRY 338

[Close]
BLAST of CmoCh04G026690 vs. NCBI nr
Match: gi|296085963|emb|CBI31404.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 405.2 bits (1040), Expect = 9.5e-110
Identity = 218/305 (71.48%), Postives = 248/305 (81.31%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQ----------------IMLERDT 60
           MA K+E RIFVGGLSW+V+ER+LEN FSR+GKIIE+Q                IMLERDT
Sbjct: 1   MAGKEENRIFVGGLSWDVTERQLENTFSRFGKIIESQFIFCQICSSFSFELVFIMLERDT 60

Query: 61  GRPRGFGFITFADRRGMDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSG 120
           GRPRGFGFIT+ADRRGM+DAIREMHG +FG+RIISVNKA+PKM G+D + G+ GG YSSG
Sbjct: 61  GRPRGFGFITYADRRGMEDAIREMHGRDFGDRIISVNKAQPKM-GEDPDHGYNGG-YSSG 120

Query: 121 GRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRF 180
           GR S+G GGDRS GQD+CFKCGRPGHWARDCPS+GGGRGRG   F SRSRF G  RGDRF
Sbjct: 121 GRGSYG-GGDRSAGQDDCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRFSG-GRGDRF 180

Query: 181 GGDRDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDV 240
           GG+RDRY++DRY    DGGRYGDRDRF+ RD+KYG+RDRY +DRY  +GDRF+ GDRY  
Sbjct: 181 GGERDRYMEDRY----DGGRYGDRDRFESRDNKYGTRDRYVNDRYAPSGDRFS-GDRYGG 240

Query: 241 SDRYPQNGYVKDRGGYDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPS 290
           SDRYPQNGY KDR GYDRD  PR G DRY  GGG  R EGRSYR+RPGPYDRP+RGGRPS
Sbjct: 241 SDRYPQNGYGKDR-GYDRDAAPRGGGDRY-AGGGSARNEGRSYRNRPGPYDRPNRGGRPS 294

[Close]
BLAST of CmoCh04G026690 vs. NCBI nr
Match: gi|224109842|ref|XP_002315330.1| (glycine-rich RNA-binding family protein [Populus trichocarpa])

HSP 1 Score: 403.7 bits (1036), Expect = 2.8e-109
Identity = 212/290 (73.10%), Postives = 241/290 (83.10%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+E RIFVGGLSW+++ER+LENAF R+GKI+E+Q+MLERDTGRPRGFGFITFADRR 
Sbjct: 1   MAGKEENRIFVGGLSWDITERQLENAFDRFGKIVESQVMLERDTGRPRGFGFITFADRRA 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHG +FG+R+ISVNKA+PK+ GDD + G+R GGYS+G R  +G GGDR  GQD
Sbjct: 61  MDDAIREMHGRDFGDRVISVNKAQPKIGGDDSDHGYR-GGYSTGSRGGYG-GGDRPAGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDG-DSRGDRFGGDRDRYVDDRYDGG 180
           ECFKCGR GHWARDCPSA GGRG G G  SSRSRF G   RGDRFGGDRDRY+DDRY   
Sbjct: 121 ECFKCGRSGHWARDCPSA-GGRGGGGGLISSRSRFGGAGDRGDRFGGDRDRYIDDRY--- 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGG 240
            DGGRYGD+DRFD RD+KYG RDRY  DRYP  GDRF+ GDRY  SDRY QNGY KD+ G
Sbjct: 181 -DGGRYGDKDRFDSRDNKYGGRDRYASDRYPPNGDRFS-GDRYGGSDRYAQNGYGKDK-G 240

Query: 241 YDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 290
           YDRD+GPR G+DRYG+ GGP R +  SYR+RP PYDRPSRGG PSS+ERY
Sbjct: 241 YDRDVGPRGGNDRYGS-GGPQRNDRSSYRNRPAPYDRPSRGGHPSSFERY 280

[Close]
BLAST of CmoCh04G026690 vs. NCBI nr
Match: gi|1009120207|ref|XP_015876797.1| (PREDICTED: glycine-rich RNA-binding protein RZ1C isoform X1 [Ziziphus jujuba])

HSP 1 Score: 402.9 bits (1034), Expect = 4.7e-109
Identity = 212/290 (73.10%), Postives = 246/290 (84.83%), Query Frame = 1 

Query: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60
           MAAK++YRIFVGGLSWNV+ER+LENAF+R+GK++E QIM+ERDTGRPRGFGFITF+DRRG
Sbjct: 1   MAAKEDYRIFVGGLSWNVTERQLENAFARFGKVVEAQIMMERDTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120
           M+DAIREMHG EFG+R ISVNKA+PKM G+D + G+R GGYSSG R S+  GGDRSVGQD
Sbjct: 61  MEDAIREMHGREFGDRTISVNKAQPKMGGEDVDHGYR-GGYSSGSRRSY-VGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDG-DSRGDRFGGDRDRYVDDRYDGG 180
           +CFKCGRPGHWARDCPS+GGGRG G GSFSS SR+ G   RGDRFG DRDRY+DDRY   
Sbjct: 121 DCFKCGRPGHWARDCPSSGGGRGGGGGSFSSHSRYGGAGGRGDRFGRDRDRYIDDRY--- 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGG 240
            DGGRYG+RDRFD R++KYGSR+RY  DRY  A +RF   DRY  +DR+PQNGY KDR G
Sbjct: 181 -DGGRYGERDRFDSRENKYGSRERYMGDRYAPA-ERF-ASDRYGGADRHPQNGYDKDR-G 240

Query: 241 YDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 290
           YDRD G R G DRYG+ GGPGR EG+SYR+R GPYDRP+R GRPSS++RY
Sbjct: 241 YDRDAGGRGGGDRYGS-GGPGRNEGKSYRNRAGPYDRPNRAGRPSSFDRY 280

The following BLAST results are available for this feature:
BLAST of CmoCh04G026690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RZ1C_ARATH3.5e-8060.78Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1[more]
RZ1B_ARATH1.2e-7257.24Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1[more]
RZ1A_ARATH1.3e-3441.32Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1[more]
GRP1_SINAL3.0e-2342.69Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1[more]
RBG7_ARATH1.7e-2141.49Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1[more]
BLAST of CmoCh04G026690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQB5_CUCSA4.2e-14189.27Uncharacterized protein OS=Cucumis sativus GN=Csa_2G324460 PE=4 SV=1[more]
F6HNC0_VITVI4.9e-11375.43Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05080 PE=4 SV=... [more]
B9HUL0_POPTR1.9e-10973.10Glycine-rich RNA-binding family protein OS=Populus trichocarpa GN=POPTR_0010s235... [more]
M5XLS7_PRUPE6.8e-10773.88Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009799mg PE=4 SV=1[more]
A0A067EAL8_CITSI1.5e-10672.76Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023559mg PE=4 SV=1[more]
BLAST of CmoCh04G026690 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04280.12.0e-8160.78 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT1G60650.16.8e-7457.24 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT3G26420.17.4e-3641.32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT2G21660.19.3e-2341.49 cold, circadian rhythm, and rna binding 2[more]
AT4G39260.11.3e-2139.56 cold, circadian rhythm, and RNA binding 1[more]
BLAST of CmoCh04G026690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465308|ref|XP_004150370.1|6.1e-14189.27PREDICTED: glycine-rich RNA-binding protein RZ1C-like [Cucumis sativus][more]
gi|731412387|ref|XP_002267178.2|7.0e-11375.43PREDICTED: glycine-rich RNA-binding protein RZ1C [Vitis vinifera][more]
gi|296085963|emb|CBI31404.3|9.5e-11071.48unnamed protein product [Vitis vinifera][more]
gi|224109842|ref|XP_002315330.1|2.8e-10973.10glycine-rich RNA-binding family protein [Populus trichocarpa][more]
gi|1009120207|ref|XP_015876797.1|4.7e-10973.10PREDICTED: glycine-rich RNA-binding protein RZ1C isoform X1 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR001878Znf_CCHC
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026690.1CmoCh04G026690.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..78
score: 1.4
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..81
score: 8.0
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 7..85
score: 19
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 111..143
score: 3.9
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 121..137
score: 8.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 121..137
score: 2.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 122..137
score: 11
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 103..142
score: 6.8
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 5..101
score: 3.0
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 4..114
score: 2.69
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 6..143
score: 1.8E-25coord: 259..285
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G026690Cucsa.308610Cucumber (Gy14) v1cgycmoB0849
CmoCh04G026690CmaCh04G025520Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G026690CmaCh04G013880Cucurbita maxima (Rimu)cmacmoB740
CmoCh04G026690Cla020538Watermelon (97103) v1cmowmB704
CmoCh04G026690Cla013740Watermelon (97103) v1cmowmB663
CmoCh04G026690Csa2G324460Cucumber (Chinese Long) v2cmocuB685
CmoCh04G026690Csa5G622570Cucumber (Chinese Long) v2cmocuB727
CmoCh04G026690MELO3C012401Melon (DHL92) v3.5.1cmomeB652
CmoCh04G026690MELO3C019833Melon (DHL92) v3.5.1cmomeB667
CmoCh04G026690ClCG05G021270Watermelon (Charleston Gray)cmowcgB665
CmoCh04G026690ClCG08G007820Watermelon (Charleston Gray)cmowcgB682
CmoCh04G026690CSPI05G26870Wild cucumber (PI 183967)cmocpiB736
CmoCh04G026690Lsi08G006900Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G026690Lsi04G000930Bottle gourd (USVL1VR-Ls)cmolsiB676
CmoCh04G026690Cp4.1LG01g24600Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G026690Cp4.1LG01g14720Cucurbita pepo (Zucchini)cmocpeB689
CmoCh04G026690MELO3C012401.2Melon (DHL92) v3.6.1cmomedB742
CmoCh04G026690MELO3C019833.2Melon (DHL92) v3.6.1cmomedB755
CmoCh04G026690CsaV3_5G036020Cucumber (Chinese Long) v3cmocucB0856
CmoCh04G026690CsaV3_2G021100Cucumber (Chinese Long) v3cmocucB0809
CmoCh04G026690Cla97C05G102950Watermelon (97103) v2cmowmbB741
CmoCh04G026690Bhi07G000703Wax gourdcmowgoB0894
CmoCh04G026690Bhi04G001055Wax gourdcmowgoB0859
CmoCh04G026690CsGy5G026320Cucumber (Gy14) v2cgybcmoB635
CmoCh04G026690CsGy2G016310Cucumber (Gy14) v2cgybcmoB233
CmoCh04G026690Carg01695Silver-seed gourdcarcmoB1122
CmoCh04G026690Carg01935Silver-seed gourdcarcmoB1136
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G026690CmoCh18G009130Cucurbita moschata (Rifu)cmocmoB345
CmoCh04G026690CmoCh04G014620Cucurbita moschata (Rifu)cmocmoB468
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G026690Silver-seed gourdcarcmoB0940
CmoCh04G026690Watermelon (97103) v2cmowmbB762
CmoCh04G026690Cucurbita moschata (Rifu)cmocmoB255
CmoCh04G026690Cucurbita moschata (Rifu)cmocmoB476
CmoCh04G026690Cucurbita maxima (Rimu)cmacmoB302
CmoCh04G026690Wild cucumber (PI 183967)cmocpiB697
CmoCh04G026690Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G026690Cucurbita pepo (Zucchini)cmocpeB664
CmoCh04G026690Cucurbita pepo (Zucchini)cmocpeB693