CmoCh04G014620 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G014620
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGlycine-rich RNA-binding family protein
LocationCmo_Chr04 : 7478763 .. 7479989 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGTTTTTGTTACATTAGACAAATTTACTTCATAATCTAGGTTTAGACTAAGCTGATGGCGGGTAGGCTTGAAGTTGTCACTTGTATACATTATTAGTATGAGATGTTCTTTACTAGCTCTGGTTTAATGACTTGATTTAAGTTTTATTGGCTGTCCAATTGATTGGCGTAAACTACCTCTTTGATGTTCCTGTAGATCATGTTGGAAAAGAATACTGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCCATCAGAGAGATGCATGGACGAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTTACAGGGGGGGAGGAGATAGATCTGCGAGGCAAGATGAATGCTTCAAATGTGGGCGTCATGGACACTGGGCTAGAGATTGTCCTTCAGTGGGTGGTGGCCGAGGAAGGGGAGGAGACTCATTTCTTACACGTTCTCGGCTTGGGGATAGTGACCGTGGGGATCGCTTTGCTGGAGATAATAATCGATATGTGGATGATCGTTATGAAGGTGGCGGGCGCTTTGGAGATCGGGATCGTTTTGATAACAGCAGGGACAGCAAATATGGAACTCGTGATCGCTATGTCAGTGAAAGGTAATGACTGATATTTTCTGTGGATTTTTGTGGCATTATTTTCTGTGTATAAAATATTCTTAAAATTTATGTTTTAAAGTAATGATCACTAGGAATTGATAAATTGACAGAATGAAGATCCTATGTCAATTGAAGATCCTATGTCATTTCTTTTGCTGATTAATCTGAGTCACTGCTCAATTATTTCCTTGCACCCGCATATAGTTGATCCATCCTTGCATTCCTGATCTTATATGCAAATCTGCAGATACCCACCTGGTGGAGATCGCTTTGGTAGCAGTAGGTACAATAACGATTCTGATCGATTTCCCGTAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGCGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTATGATCGCCCTAGCCGAGGTGGGCGACCATCCTCATTTGATCGCTATTGAATGTTTTGTTGTTAGAAGATAGCACATTTTCTGGTTTATCTAGTAAAGTGTACTACATGCTGGGTGTTGTGCTGTTAG

mRNA sequence

ATGCCGATCATGTTGGAAAAGAATACTGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCCATCAGAGAGATGCATGGACGAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTTACAGGGGGGGAGGAGATAGATCTGCGAGGCAAGATGAATGCTTCAAATGTGGGCGTCATGGACACTGGGCTAGAGATTGTCCTTCAGTGGGTGGTGGCCGAGGAAGGGGAGGAGACTCATTTCTTACACGTTCTCGGCTTGGGGATAGTGACCGTGGGGATCGCTTTGCTGGAGATAATAATCGATATGTGGATGATCGTTATGAAGGTGGCGGGCGCTTTGGAGATCGGGATCGTTTTGATAACAGCAGGGACAGCAAATATGGAACTCGTGATCGCTATGTCAGTGAAAGATACCCACCTGGTGGAGATCGCTTTGGTAGCAGTAGGTACAATAACGATTCTGATCGATTTCCCGTAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGCGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTATGATCGCCCTAGCCGAGCACATTTTCTGGTTTATCTAGTAAAGTGTACTACATGCTGGGTGTTGTGCTGTTAG

Coding sequence (CDS)

ATGCCGATCATGTTGGAAAAGAATACTGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCCATCAGAGAGATGCATGGACGAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTTACAGGGGGGGAGGAGATAGATCTGCGAGGCAAGATGAATGCTTCAAATGTGGGCGTCATGGACACTGGGCTAGAGATTGTCCTTCAGTGGGTGGTGGCCGAGGAAGGGGAGGAGACTCATTTCTTACACGTTCTCGGCTTGGGGATAGTGACCGTGGGGATCGCTTTGCTGGAGATAATAATCGATATGTGGATGATCGTTATGAAGGTGGCGGGCGCTTTGGAGATCGGGATCGTTTTGATAACAGCAGGGACAGCAAATATGGAACTCGTGATCGCTATGTCAGTGAAAGATACCCACCTGGTGGAGATCGCTTTGGTAGCAGTAGGTACAATAACGATTCTGATCGATTTCCCGTAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGCGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTATGATCGCCCTAGCCGAGCACATTTTCTGGTTTATCTAGTAAAGTGTACTACATGCTGGGTGTTGTGCTGTTAG
Homology
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BLAST of CmoCh04G014620 vs. Swiss-Prot
Match: RZ1C_ARATH (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.0e-57
Identity = 139/260 (53.46%), Postives = 168/260 (64.62%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDI--DHGY 62
           IMLE++TGR RGFGFITF+DRR MD++IREMHGR+FG+R+ISVN+AEPK+G D    HG 
Sbjct: 38  IMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGS 97

Query: 63  RGGGDRS------------------ARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLT 122
           RGG D                      +DECFKCGR GHWARDCPS GGGRG     F +
Sbjct: 98  RGGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSS 157

Query: 123 R-SRLGDSD-RGDRFAG-----DNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVS 182
           R S  G SD R DR+A      D  RY+DDRY+G  R+G RDRFD SR++ Y  RDRY S
Sbjct: 158 RASAYGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFD-SREA-YIPRDRYAS 217

Query: 183 ERYPPGGDRF-GSSRYNNDSDRFPVNGYGKDRGYYRDGGP-RGVDKYG---SGGPAR--- 227
           +RY    DRF G  RY+  SDR+P   Y K R + RD  P  G D+YG   +GGP R   
Sbjct: 218 DRYAAPADRFAGGDRYSRGSDRYPPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGG 277

[Close]
BLAST of CmoCh04G014620 vs. Swiss-Prot
Match: RZ1B_ARATH (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-53
Identity = 129/242 (53.31%), Postives = 151/242 (62.40%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKM-GEDIDHGYR 62
           IM+ ++TGRPRGFGFITF+DRRG DDAI+ MHGRE G ++ISVNKAEPK+ GED+D   +
Sbjct: 43  IMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKK 102

Query: 63  GGGDRS---ARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSD-RGDRFAG 122
           GGG  S     +DECFKC R GHWARDCPS G  R R       RSR+GD D   DR+ G
Sbjct: 103 GGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRY-G 162

Query: 123 DN------------NRYVDDRYE-GGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDR 182
           D             +RY+D R +  GGR+  RDRFD+    KY  RD Y  ERY P GDR
Sbjct: 163 DRDLEREREREREFDRYMDGRRDRDGGRYSYRDRFDSG--DKYEPRDHYPFERYAPPGDR 222

Query: 183 FGSSRYNNDSDRFPVNGYGKDRGYYRDGGPRGV-DKYGSGGPARDEGRSYRNRPAPYDRP 226
           F S RY            G++R Y RD   R   D+YG  GP RDEGR YR+RP PYDRP
Sbjct: 223 FVSDRYGMPEHHLENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRP 281

[Close]
BLAST of CmoCh04G014620 vs. Swiss-Prot
Match: RZ1A_ARATH (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-20
Identity = 84/241 (34.85%), Postives = 117/241 (48.55%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMG-----EDID 62
           ++L+K +GR RGFGFITF +++ MD+AI  M+G +   R I+V+KA+P  G      D D
Sbjct: 38  VVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGD 97

Query: 63  HGYRGGGDRSARQ-------DECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSD 122
            G   G DR   +        +CFKCG+ GH+AR+CPS     G G            S 
Sbjct: 98  RGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSRDGGG----------RFSS 157

Query: 123 RGDRFAGDNNRY--VDDRYEG-GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGS 182
           + DR++  ++RY   DDRY     R+G +D   +S+D +Y ++D     R   GG R+G 
Sbjct: 158 KDDRYSSKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSR-DGGGSRYGP 217

Query: 183 SRYNNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRAH 229
            R              +  G  RDGG RG      GG         R+  APYDRP    
Sbjct: 218 DRSGE-----------RAGGRSRDGGSRG----APGGE--------RHSRAPYDRPRAGG 244

[Close]
BLAST of CmoCh04G014620 vs. Swiss-Prot
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.2e-10
Identity = 51/134 (38.06%), Postives = 71/134 (52.99%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRG 62
           I+ ++ TGR RGFGF+TF D + M DAI  M+G++   R I+VN+A+ + G     G+RG
Sbjct: 39  IINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGHRG 98

Query: 63  GGDRSARQDECFKCGRHGHWARDCPSVGGGRGR--GGDSFLTRSRLGDSDRGDRFAGDNN 122
           GG         ++ G  G ++    S GGG GR  GG  + +    G S RG    G   
Sbjct: 99  GGGGG------YRSGGGGGYSGGGGSYGGGGGRREGGGGY-SGGGGGYSSRG----GGGG 158

Query: 123 RYVDDRYEGGGRFG 135
            Y   R EGGG +G
Sbjct: 159 SYGGGRREGGGGYG 160

[Close]
BLAST of CmoCh04G014620 vs. Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.1e-09
Identity = 49/146 (33.56%), Postives = 68/146 (46.58%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRG 62
           ++ ++ TGR RGFGF+TFS  + M DAI  M+G+E   R I+VN+A+ + G     GY G
Sbjct: 39  VITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGG 98

Query: 63  GGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRY 122
           GG               G+  R+    GGG G GG  +  R   G    G  + G    Y
Sbjct: 99  GGG--------------GYGGRE----GGGYGGGGGGYGGRREGGGGYGGGGYGGGGGGY 158

Query: 123 VDDRYEGGGRFGDRDRFDNSRDSKYG 149
                EGGG +G    +  +R    G
Sbjct: 159 --GGREGGGGYGGGGGYGGNRGDSGG 164

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BLAST of CmoCh04G014620 vs. TrEMBL
Match: A0A0A0KUW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622570 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 4.0e-116
Identity = 210/238 (88.24%), Postives = 218/238 (91.60%), Query Frame = 1 

Query: 4   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 63
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHG+EFGERIISVNKAEPKMGED+DHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 60

Query: 64  G---------------DRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGD 123
           G               DRSARQDECFKCGR GHWARDCPSVGGGRGRGGDSFL RSRLGD
Sbjct: 61  GYSTGGRGSYGGGGGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGD 120

Query: 124 SDRGDRFAGDNNRYVDDRYEGGGRFGDRDRFDNS-RDSKYGTRDRYVSERYPPGGDRFGS 183
           SDRGDRFAGD NRYVDDRY+GGGRFGDRDRFD+S RD+KYG+RDRYVS+RYPPGGDRFGS
Sbjct: 121 SDRGDRFAGDANRYVDDRYDGGGRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGS 180

Query: 184 SRYNNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR 226
           SRY NDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRP+R
Sbjct: 181 SRYTNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPNR 238

[Close]
BLAST of CmoCh04G014620 vs. TrEMBL
Match: F6HNC0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05080 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 4.7e-85
Identity = 165/235 (70.21%), Postives = 189/235 (80.43%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYR- 62
           IMLE++TGRPRGFGFIT++DRRGM+DAIREMHGR+FG+RIISVNKA+PKMGED DHGY  
Sbjct: 38  IMLERDTGRPRGFGFITYADRRGMEDAIREMHGRDFGDRIISVNKAQPKMGEDPDHGYNG 97

Query: 63  ----------GGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDR 122
                     GGGDRSA QD+CFKCGR GHWARDCPS GGGRGRGG  F +RSR     R
Sbjct: 98  GYSSGGRGSYGGGDRSAGQDDCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRF-SGGR 157

Query: 123 GDRFAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYN 182
           GDRF G+ +RY++DRY+ GGR+GDRDRF+ SRD+KYGTRDRYV++RY P GDRF   RY 
Sbjct: 158 GDRFGGERDRYMEDRYD-GGRYGDRDRFE-SRDNKYGTRDRYVNDRYAPSGDRFSGDRYG 217

Query: 183 NDSDRFPVNGYGKDRGYYRDGGPR-GVDKYGSGGPARDEGRSYRNRPAPYDRPSR 226
             SDR+P NGYGKDRGY RD  PR G D+Y  GG AR+EGRSYRNRP PYDRP+R
Sbjct: 218 G-SDRYPQNGYGKDRGYDRDAAPRGGGDRYAGGGSARNEGRSYRNRPGPYDRPNR 268

[Close]
BLAST of CmoCh04G014620 vs. TrEMBL
Match: A5ANB8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011831 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.4e-84
Identity = 164/234 (70.09%), Postives = 188/234 (80.34%), Query Frame = 1 

Query: 4   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYR-- 63
           MLE++TGRPRGFGFIT++DRRGM+DAIREMHGR+FG+RIISVNKA+PKMGED DHGY   
Sbjct: 1   MLERDTGRPRGFGFITYADRRGMEDAIREMHGRDFGDRIISVNKAQPKMGEDPDHGYNGG 60

Query: 64  ---------GGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRG 123
                    GGGDRSA QD+CFKCGR GHWARDCPS GGGRGRGG  F +RSR     RG
Sbjct: 61  YSSGGRGSYGGGDRSAGQDDCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRF-SGGRG 120

Query: 124 DRFAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNN 183
           DRF G+ +RY++DRY+ GGR+GDRDRF+ SRD+KYGTRDRYV++RY P GDRF   RY  
Sbjct: 121 DRFGGERDRYMEDRYD-GGRYGDRDRFE-SRDNKYGTRDRYVNDRYAPSGDRFSGDRYGG 180

Query: 184 DSDRFPVNGYGKDRGYYRDGGPR-GVDKYGSGGPARDEGRSYRNRPAPYDRPSR 226
            SDR+P NGYGKDRGY RD  PR G D+Y  GG AR+EGRSYRNRP PYDRP+R
Sbjct: 181 -SDRYPQNGYGKDRGYDRDAAPRGGGDRYAGGGSARNEGRSYRNRPGPYDRPNR 230

[Close]
BLAST of CmoCh04G014620 vs. TrEMBL
Match: W9RWS5_9ROSA (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Morus notabilis GN=L484_017027 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 7.6e-83
Identity = 166/237 (70.04%), Postives = 192/237 (81.01%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMG-EDIDHGYR 62
           IM+E++TGRPRGFGFITF DRRGM+DAIREMHGREFG+RIISVNKA+PKMG +D DHGYR
Sbjct: 38  IMMERDTGRPRGFGFITFGDRRGMEDAIREMHGREFGDRIISVNKAQPKMGDDDADHGYR 97

Query: 63  -----------GGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRG--GDSFLTRSRLGD 122
                      GGGDRS  QD+CFKCGR GHWARDCPS GGGRG G  GD F      G 
Sbjct: 98  GSYSSGGRKGYGGGDRSVGQDDCFKCGRPGHWARDCPSAGGGRGGGRFGDRF-----GGA 157

Query: 123 SDRGDRFAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSS 182
           S RGDRF GD +RY+DDRY+  GR+G+RDR D SRDSKYG+RDRY S+RY P GDRF + 
Sbjct: 158 SGRGDRFGGDRDRYLDDRYD-AGRYGERDRVD-SRDSKYGSRDRYGSDRYQP-GDRFAND 217

Query: 183 RYNNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR 226
           RYN+ +DR+P+NGYGKDRG+ RDGGPRG D+YGSGGPAR+EG+SYR+RP PYDRP+R
Sbjct: 218 RYNS-ADRYPLNGYGKDRGFDRDGGPRGGDRYGSGGPARNEGKSYRSRPDPYDRPNR 265

[Close]
BLAST of CmoCh04G014620 vs. TrEMBL
Match: A0A0D2RS21_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G235100 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 9.9e-83
Identity = 165/233 (70.82%), Postives = 187/233 (80.26%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRG 62
           IMLE++TGRPRGFGFITF+DRR MD+AIREMHGRE GER ISVNKA+PKMGED+DHGYRG
Sbjct: 38  IMLERDTGRPRGFGFITFADRRSMDEAIREMHGRELGERTISVNKAQPKMGEDLDHGYRG 97

Query: 63  G-----------GDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDS-D 122
           G           GDR   QDECFKCGR GHWARDCPS GGGRG  G  F +RSR G + D
Sbjct: 98  GYSSSGRGRYAGGDRPVAQDECFKCGRFGHWARDCPSAGGGRGGSGGMFSSRSRYGGADD 157

Query: 123 RGDRFAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRY 182
           RGDRF  D +RY+DDRY+ GGR+GDRDRFD SRD +YG+RDRY+S+RYPP GDRFG  RY
Sbjct: 158 RGDRFR-DRDRYIDDRYD-GGRYGDRDRFD-SRDDRYGSRDRYISDRYPPTGDRFG-DRY 217

Query: 183 NNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRP 224
              SDRFP NG+GK+RG YRD  PRG D+YG+GGPAR++GRSYRNR  PYDRP
Sbjct: 218 AG-SDRFPQNGFGKERG-YRDVAPRGNDRYGAGGPARNDGRSYRNRTGPYDRP 264

[Close]
BLAST of CmoCh04G014620 vs. TAIR10
Match: AT5G04280.1 (AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 222.2 bits (565), Expect = 3.4e-58
Identity = 139/260 (53.46%), Postives = 168/260 (64.62%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDI--DHGY 62
           IMLE++TGR RGFGFITF+DRR MD++IREMHGR+FG+R+ISVN+AEPK+G D    HG 
Sbjct: 38  IMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGS 97

Query: 63  RGGGDRS------------------ARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLT 122
           RGG D                      +DECFKCGR GHWARDCPS GGGRG     F +
Sbjct: 98  RGGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSS 157

Query: 123 R-SRLGDSD-RGDRFAG-----DNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVS 182
           R S  G SD R DR+A      D  RY+DDRY+G  R+G RDRFD SR++ Y  RDRY S
Sbjct: 158 RASAYGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFD-SREA-YIPRDRYAS 217

Query: 183 ERYPPGGDRF-GSSRYNNDSDRFPVNGYGKDRGYYRDGGP-RGVDKYG---SGGPAR--- 227
           +RY    DRF G  RY+  SDR+P   Y K R + RD  P  G D+YG   +GGP R   
Sbjct: 218 DRYAAPADRFAGGDRYSRGSDRYPPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGG 277

[Close]
BLAST of CmoCh04G014620 vs. TAIR10
Match: AT1G60650.1 (AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-54
Identity = 129/242 (53.31%), Postives = 151/242 (62.40%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKM-GEDIDHGYR 62
           IM+ ++TGRPRGFGFITF+DRRG DDAI+ MHGRE G ++ISVNKAEPK+ GED+D   +
Sbjct: 43  IMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKK 102

Query: 63  GGGDRS---ARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSD-RGDRFAG 122
           GGG  S     +DECFKC R GHWARDCPS G  R R       RSR+GD D   DR+ G
Sbjct: 103 GGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRY-G 162

Query: 123 DN------------NRYVDDRYE-GGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDR 182
           D             +RY+D R +  GGR+  RDRFD+    KY  RD Y  ERY P GDR
Sbjct: 163 DRDLEREREREREFDRYMDGRRDRDGGRYSYRDRFDSG--DKYEPRDHYPFERYAPPGDR 222

Query: 183 FGSSRYNNDSDRFPVNGYGKDRGYYRDGGPRGV-DKYGSGGPARDEGRSYRNRPAPYDRP 226
           F S RY            G++R Y RD   R   D+YG  GP RDEGR YR+RP PYDRP
Sbjct: 223 FVSDRYGMPEHHLENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRP 281

[Close]
BLAST of CmoCh04G014620 vs. TAIR10
Match: AT3G26420.1 (AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-21
Identity = 84/241 (34.85%), Postives = 117/241 (48.55%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMG-----EDID 62
           ++L+K +GR RGFGFITF +++ MD+AI  M+G +   R I+V+KA+P  G      D D
Sbjct: 38  VVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGD 97

Query: 63  HGYRGGGDRSARQ-------DECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSD 122
            G   G DR   +        +CFKCG+ GH+AR+CPS     G G            S 
Sbjct: 98  RGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSRDGGG----------RFSS 157

Query: 123 RGDRFAGDNNRY--VDDRYEG-GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGS 182
           + DR++  ++RY   DDRY     R+G +D   +S+D +Y ++D     R   GG R+G 
Sbjct: 158 KDDRYSSKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSR-DGGGSRYGP 217

Query: 183 SRYNNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRAH 229
            R              +  G  RDGG RG      GG         R+  APYDRP    
Sbjct: 218 DRSGE-----------RAGGRSRDGGSRG----APGGE--------RHSRAPYDRPRAGG 244

[Close]
BLAST of CmoCh04G014620 vs. TAIR10
Match: AT2G21660.1 (AT2G21660.1 cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-11
Identity = 51/134 (38.06%), Postives = 71/134 (52.99%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRG 62
           I+ ++ TGR RGFGF+TF D + M DAI  M+G++   R I+VN+A+ + G     G+RG
Sbjct: 39  IINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGHRG 98

Query: 63  GGDRSARQDECFKCGRHGHWARDCPSVGGGRGR--GGDSFLTRSRLGDSDRGDRFAGDNN 122
           GG         ++ G  G ++    S GGG GR  GG  + +    G S RG    G   
Sbjct: 99  GGGGG------YRSGGGGGYSGGGGSYGGGGGRREGGGGY-SGGGGGYSSRG----GGGG 158

Query: 123 RYVDDRYEGGGRFG 135
            Y   R EGGG +G
Sbjct: 159 SYGGGRREGGGGYG 160

[Close]
BLAST of CmoCh04G014620 vs. TAIR10
Match: AT2G24590.1 (AT2G24590.1 RNA recognition motif and CCHC-type zinc finger domains containing protein)

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-09
Identity = 39/98 (39.80%), Postives = 52/98 (53.06%), Query Frame = 1 

Query: 11  RPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGGGD----R 70
           RP G+ F+ F D R   DAIRE+ G+  G R   V ++  + G     G RGGGD    R
Sbjct: 36  RPPGYAFLDFEDSRDARDAIREVDGKN-GWR---VEQSHNRGGGGGRGGGRGGGDGGRGR 95

Query: 71  SARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRS 105
                +C++CG  GH+AR+C S GG  GR      +RS
Sbjct: 96  GGSDLKCYECGESGHFARECRSRGGSGGRRRSRSRSRS 129

[Close]
BLAST of CmoCh04G014620 vs. NCBI nr
Match: gi|449449318|ref|XP_004142412.1| (PREDICTED: glycine-rich RNA-binding protein RZ1C-like [Cucumis sativus])

HSP 1 Score: 427.6 bits (1098), Expect = 1.5e-116
Identity = 211/239 (88.28%), Postives = 219/239 (91.63%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRG 62
           IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHG+EFGERIISVNKAEPKMGED+DHGYRG
Sbjct: 38  IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG 97

Query: 63  GG---------------DRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLG 122
           GG               DRSARQDECFKCGR GHWARDCPSVGGGRGRGGDSFL RSRLG
Sbjct: 98  GGYSTGGRGSYGGGGGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLG 157

Query: 123 DSDRGDRFAGDNNRYVDDRYEGGGRFGDRDRFDNS-RDSKYGTRDRYVSERYPPGGDRFG 182
           DSDRGDRFAGD NRYVDDRY+GGGRFGDRDRFD+S RD+KYG+RDRYVS+RYPPGGDRFG
Sbjct: 158 DSDRGDRFAGDANRYVDDRYDGGGRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFG 217

Query: 183 SSRYNNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR 226
           SSRY NDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRP+R
Sbjct: 218 SSRYTNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPNR 276

[Close]
BLAST of CmoCh04G014620 vs. NCBI nr
Match: gi|700197065|gb|KGN52242.1| (hypothetical protein Csa_5G622570 [Cucumis sativus])

HSP 1 Score: 425.6 bits (1093), Expect = 5.7e-116
Identity = 210/238 (88.24%), Postives = 218/238 (91.60%), Query Frame = 1 

Query: 4   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 63
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHG+EFGERIISVNKAEPKMGED+DHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 60

Query: 64  G---------------DRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGD 123
           G               DRSARQDECFKCGR GHWARDCPSVGGGRGRGGDSFL RSRLGD
Sbjct: 61  GYSTGGRGSYGGGGGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGD 120

Query: 124 SDRGDRFAGDNNRYVDDRYEGGGRFGDRDRFDNS-RDSKYGTRDRYVSERYPPGGDRFGS 183
           SDRGDRFAGD NRYVDDRY+GGGRFGDRDRFD+S RD+KYG+RDRYVS+RYPPGGDRFGS
Sbjct: 121 SDRGDRFAGDANRYVDDRYDGGGRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGS 180

Query: 184 SRYNNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR 226
           SRY NDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRP+R
Sbjct: 181 SRYTNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPNR 238

[Close]
BLAST of CmoCh04G014620 vs. NCBI nr
Match: gi|659091966|ref|XP_008446829.1| (PREDICTED: glycine-rich RNA-binding protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 423.7 bits (1088), Expect = 2.2e-115
Identity = 211/238 (88.66%), Postives = 217/238 (91.18%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRG 62
           IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHG+EFGERIISVNKAEPKMGED+DHGYRG
Sbjct: 38  IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG 97

Query: 63  GG--------------DRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGD 122
           GG              DRSARQDECFKCGR GHWARDCPSVGGGRGRGGDSFL RSRLGD
Sbjct: 98  GGYSTGGRGSYGGGGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGD 157

Query: 123 SDRGDRFAGDNNRYVDDRYEGGGRFGDRDRFD-NSRDSKYGTRDRYVSERYPPGGDRFGS 182
            DRGDRFAGD NRYVDDRYEGGGRFGDRDRFD +SRD+KYG+RDRYVS+RYPPGGDRFGS
Sbjct: 158 GDRGDRFAGDTNRYVDDRYEGGGRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGS 217

Query: 183 SRYNNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR 226
            RYNNDSDRFPVNGYGKDRGYYRD GPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR
Sbjct: 218 GRYNNDSDRFPVNGYGKDRGYYRD-GPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR 274

[Close]
BLAST of CmoCh04G014620 vs. NCBI nr
Match: gi|659091970|ref|XP_008446831.1| (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 422.2 bits (1084), Expect = 6.3e-115
Identity = 210/237 (88.61%), Postives = 216/237 (91.14%), Query Frame = 1 

Query: 4   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYRGG 63
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHG+EFGERIISVNKAEPKMGED+DHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 60

Query: 64  G--------------DRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDS 123
           G              DRSARQDECFKCGR GHWARDCPSVGGGRGRGGDSFL RSRLGD 
Sbjct: 61  GYSTGGRGSYGGGGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDG 120

Query: 124 DRGDRFAGDNNRYVDDRYEGGGRFGDRDRFD-NSRDSKYGTRDRYVSERYPPGGDRFGSS 183
           DRGDRFAGD NRYVDDRYEGGGRFGDRDRFD +SRD+KYG+RDRYVS+RYPPGGDRFGS 
Sbjct: 121 DRGDRFAGDTNRYVDDRYEGGGRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSG 180

Query: 184 RYNNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR 226
           RYNNDSDRFPVNGYGKDRGYYRD GPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR
Sbjct: 181 RYNNDSDRFPVNGYGKDRGYYRD-GPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSR 236

[Close]
BLAST of CmoCh04G014620 vs. NCBI nr
Match: gi|296085963|emb|CBI31404.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 322.4 bits (825), Expect = 6.8e-85
Identity = 165/235 (70.21%), Postives = 189/235 (80.43%), Query Frame = 1 

Query: 3   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYR- 62
           IMLE++TGRPRGFGFIT++DRRGM+DAIREMHGR+FG+RIISVNKA+PKMGED DHGY  
Sbjct: 54  IMLERDTGRPRGFGFITYADRRGMEDAIREMHGRDFGDRIISVNKAQPKMGEDPDHGYNG 113

Query: 63  ----------GGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDR 122
                     GGGDRSA QD+CFKCGR GHWARDCPS GGGRGRGG  F +RSR     R
Sbjct: 114 GYSSGGRGSYGGGDRSAGQDDCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRF-SGGR 173

Query: 123 GDRFAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYN 182
           GDRF G+ +RY++DRY+ GGR+GDRDRF+ SRD+KYGTRDRYV++RY P GDRF   RY 
Sbjct: 174 GDRFGGERDRYMEDRYD-GGRYGDRDRFE-SRDNKYGTRDRYVNDRYAPSGDRFSGDRYG 233

Query: 183 NDSDRFPVNGYGKDRGYYRDGGPR-GVDKYGSGGPARDEGRSYRNRPAPYDRPSR 226
             SDR+P NGYGKDRGY RD  PR G D+Y  GG AR+EGRSYRNRP PYDRP+R
Sbjct: 234 G-SDRYPQNGYGKDRGYDRDAAPRGGGDRYAGGGSARNEGRSYRNRPGPYDRPNR 284

The following BLAST results are available for this feature:
BLAST of CmoCh04G014620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RZ1C_ARATH6.0e-5753.46Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1[more]
RZ1B_ARATH2.4e-5353.31Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1[more]
RZ1A_ARATH2.6e-2034.85Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1[more]
RBG7_ARATH7.2e-1038.06Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1[more]
GRP2_SORBI6.1e-0933.56Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1[more]
BLAST of CmoCh04G014620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUW9_CUCSA4.0e-11688.24Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622570 PE=4 SV=1[more]
F6HNC0_VITVI4.7e-8570.21Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05080 PE=4 SV=... [more]
A5ANB8_VITVI1.4e-8470.09Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011831 PE=4 SV=1[more]
W9RWS5_9ROSA7.6e-8370.04Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Morus notabilis GN=... [more]
A0A0D2RS21_GOSRA9.9e-8370.82Uncharacterized protein OS=Gossypium raimondii GN=B456_011G235100 PE=4 SV=1[more]
BLAST of CmoCh04G014620 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04280.13.4e-5853.46 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT1G60650.11.3e-5453.31 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT3G26420.11.5e-2134.85 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT2G21660.14.0e-1138.06 cold, circadian rhythm, and rna binding 2[more]
AT2G24590.18.4e-0939.80 RNA recognition motif and CCHC-type zinc finger domains containing p... [more]
BLAST of CmoCh04G014620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449318|ref|XP_004142412.1|1.5e-11688.28PREDICTED: glycine-rich RNA-binding protein RZ1C-like [Cucumis sativus][more]
gi|700197065|gb|KGN52242.1|5.7e-11688.24hypothetical protein Csa_5G622570 [Cucumis sativus][more]
gi|659091966|ref|XP_008446829.1|2.2e-11588.66PREDICTED: glycine-rich RNA-binding protein-like isoform X1 [Cucumis melo][more]
gi|659091970|ref|XP_008446831.1|6.3e-11588.61PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like isoform X2 [Cu... [more]
gi|296085963|emb|CBI31404.3|6.8e-8570.21unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR001878Znf_CCHC
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G014620.1CmoCh04G014620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 6..43
score: 1.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 1..50
score: 11
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 70..93
score: 2.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 72..88
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 72..88
score: 9.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 73..88
score: 11
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 3..66
score: 9.5
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 3..71
score: 1.74
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 150..189
score: 3.8E-12coord: 1..54
score: 3.8
NoneNo IPR availablePANTHERPTHR24012:SF459RNA-BINDING PROTEIN 4Fcoord: 150..189
score: 3.8E-12coord: 1..54
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G014620Cucsa.308610Cucumber (Gy14) v1cgycmoB0848
CmoCh04G014620CmaCh18G009090Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G014620CmaCh04G013880Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G014620CmaCh04G025520Cucurbita maxima (Rimu)cmacmoB739
CmoCh04G014620Cla020538Watermelon (97103) v1cmowmB693
CmoCh04G014620Cla013740Watermelon (97103) v1cmowmB662
CmoCh04G014620Csa5G622570Cucumber (Chinese Long) v2cmocuB738
CmoCh04G014620MELO3C019833Melon (DHL92) v3.5.1cmomeB674
CmoCh04G014620MELO3C012401Melon (DHL92) v3.5.1cmomeB631
CmoCh04G014620ClCG05G021270Watermelon (Charleston Gray)cmowcgB654
CmoCh04G014620CSPI05G26870Wild cucumber (PI 183967)cmocpiB745
CmoCh04G014620Lsi04G000930Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G014620Cp4.1LG09g04100Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G014620Cp4.1LG01g14720Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G014620Cp4.1LG01g24600Cucurbita pepo (Zucchini)cmocpeB687
CmoCh04G014620MELO3C012401.2Melon (DHL92) v3.6.1cmomedB720
CmoCh04G014620Cla97C05G102950Watermelon (97103) v2cmowmbB729
CmoCh04G014620Bhi04G001057Wax gourdcmowgoB0869
CmoCh04G014620Bhi07G000703Wax gourdcmowgoB0904
CmoCh04G014620Carg20711Silver-seed gourdcarcmoB0655
CmoCh04G014620Carg01935Silver-seed gourdcarcmoB1138
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G014620CmoCh18G009130Cucurbita moschata (Rifu)cmocmoB336
CmoCh04G014620CmoCh04G026690Cucurbita moschata (Rifu)cmocmoB468
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G014620Watermelon (Charleston Gray)cmowcgB681
CmoCh04G014620Cucurbita pepo (Zucchini)cmocpeB665
CmoCh04G014620Bottle gourd (USVL1VR-Ls)cmolsiB700
CmoCh04G014620Cucumber (Gy14) v2cgybcmoB650
CmoCh04G014620Melon (DHL92) v3.6.1cmomedB763
CmoCh04G014620Silver-seed gourdcarcmoB0366
CmoCh04G014620Silver-seed gourdcarcmoB0939
CmoCh04G014620Cucumber (Chinese Long) v3cmocucB0874
CmoCh04G014620Watermelon (97103) v2cmowmbB761
CmoCh04G014620Cucurbita moschata (Rifu)cmocmoB257
CmoCh04G014620Cucurbita maxima (Rimu)cmacmoB305