Cla97C05G102950 (gene) Watermelon (97103) v2

Overview
NameCla97C05G102950
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionGlycine-rich RNA-binding family protein
LocationCla97Chr05 : 31111214 .. 31112861 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAAAGTAAGTTGTCAGACTGTTTAATTATATATTTTAAAACATTTTTATGCTGTTATTATCAATTACTTTAAATGAGTTCTCTTTGATGTTGTACTTTTTATCGTGTATACAGCATGTGATAGGCTGAACTTCATCACCAACTTGTACCCATTAATTGTTCTATTATTCTGCTTCTCCATGGAATGTAGATTTTGTCACCAAGATTTTTAAATGATAATTTGATGGAGTTTAAACCTCTATTTTTAGTAGCTGTTGGAGTTTGAAACCTCTAGATCATGGTAACTGTTTAGTATTGAATTTGTGCCCCTCTCGACATTGCCATAATTGTATTTATGGGCTTGAAGCCCAAAATTGGGTATAGTTATCTATGCTCTTAGATTATATCCATCAACTCCAAACTTCTAAGGGCTGTCAACTGGGATCTTAAATACCAAAACAAAACCACCTTATATTGGTGGTCAGGCCGTAGATTTCATCTTTGAACATTGAGGAAGTGGGAATTCTGGGCTATTAATTTATTTTTAATAGTTGTGGTCTTCATCCCTGTTTCTTTGATGCTGGTTTTTGTTGCATTGGACAAATTTACTTTATAATCTAGGGCTAGACTATGCTGATGGCTGGTAGGTTTCAAGTTTTCACTTCGTATACATTATTAGCATGGGATGTAATTTAATCACTTGATTTAAGTTTTATTGGCTGTTCAATTGATTTGCTCTTTGGCATTCCTGTAGATCATGTTGGAAAAGAATACAGGCCGCCCACGTGGCTTTGGCTTTATAACATTTTCAGATCGCCGTGGAATGGATGATGCTATCAGAGAGATGCATGGACAAGAATTTGGAGACCGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCATGGTTACAGGGGGGGAGGATACTCAACTGGTGGCAGGGGTAGCTATGGGAGTGGGGGAGGAGATAGATCTGCGAGGCAAGATGAATGCTTCAAATGTGGGCGTCTTGGACACTGGGCTAGAGATTGTCCTTCAGTTGGAGGTGGCCGAGGAAGGGGAGGAGATTCATTTCTTGGACGTTCTCGGCTTGGGGATAGTGATCGTGGGGACCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGGCGCTTTGGAGATAGAGACCGTTTTGATAGCAGCAGCAGGGACAACAAATATGGAAGTCGTGATCGCTATGTTAGTGACAGGTACTTGCTGATATTTTTTGTGGATTTTTGAGGCATTACTTTCCCTGTCTAAAAATTTATGGCTTTAAAGTAATTATCACTAGGAAATTCTAAATGGGCAGAATTAGCGATCCGATATTGTTACTATCCTCTCATTCCTGATTTTATACGTAAATCTGCAGGTATCCACCTGGTGGAGACCGCTTCGGAAGCAGTAGGTATAATAATGAATCTGATCGTTTCCCTGTAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGCATTGATAAGTATGGAAGCGGCGGTCCAGCACGCGATGAGGGAAGAAGCTATAGAAACAGACCTGCTCCTTATGATCGCCCTAGCCGTGGTGGGCGGCCATCATCATTTGACCGTTACTAA

mRNA sequence

ATGGAAGAAAAAATCATGTTGGAAAAGAATACAGGCCGCCCACGTGGCTTTGGCTTTATAACATTTTCAGATCGCCGTGGAATGGATGATGCTATCAGAGAGATGCATGGACAAGAATTTGGAGACCGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCATGGTTACAGGGGGGGAGGATACTCAACTGGTGGCAGGGGTAGCTATGGGAGTGGGGGAGGAGATAGATCTGCGAGGCAAGATGAATGCTTCAAATGTGGGCGTCTTGGACACTGGGCTAGAGATTGTCCTTCAGTTGGAGGTGGCCGAGGAAGGGGAGGAGATTCATTTCTTGGACGTTCTCGGCTTGGGGATAGTGATCGTGGGGACCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGGCGCTTTGGAGATAGAGACCGTTTTGATAGCAGCAGCAGGGACAACAAATATGGAAGTCGTGATCGCTATGTTAGTGACAGGTATCCACCTGGTGGAGACCGCTTCGGAAGCAGTAGGTATAATAATGAATCTGATCGTTTCCCTGTAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGCATTGATAAGTATGGAAGCGGCGGTCCAGCACGCGATGAGGGAAGAAGCTATAGAAACAGACCTGCTCCTTATGATCGCCCTAGCCGTGGTGGGCGGCCATCATCATTTGACCGTTACTAA

Coding sequence (CDS)

ATGGAAGAAAAAATCATGTTGGAAAAGAATACAGGCCGCCCACGTGGCTTTGGCTTTATAACATTTTCAGATCGCCGTGGAATGGATGATGCTATCAGAGAGATGCATGGACAAGAATTTGGAGACCGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCATGGTTACAGGGGGGGAGGATACTCAACTGGTGGCAGGGGTAGCTATGGGAGTGGGGGAGGAGATAGATCTGCGAGGCAAGATGAATGCTTCAAATGTGGGCGTCTTGGACACTGGGCTAGAGATTGTCCTTCAGTTGGAGGTGGCCGAGGAAGGGGAGGAGATTCATTTCTTGGACGTTCTCGGCTTGGGGATAGTGATCGTGGGGACCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGGCGCTTTGGAGATAGAGACCGTTTTGATAGCAGCAGCAGGGACAACAAATATGGAAGTCGTGATCGCTATGTTAGTGACAGGTATCCACCTGGTGGAGACCGCTTCGGAAGCAGTAGGTATAATAATGAATCTGATCGTTTCCCTGTAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGCATTGATAAGTATGGAAGCGGCGGTCCAGCACGCGATGAGGGAAGAAGCTATAGAAACAGACCTGCTCCTTATGATCGCCCTAGCCGTGGTGGGCGGCCATCATCATTTGACCGTTACTAA

Protein sequence

MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLGRSRLGDSDRGDRFAGDNNRYVDDRYEGGGRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSSRYNNESDRFPVNGYGKDRGYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY
Homology
[Close]
BLAST of Cla97C05G102950 vs. NCBI nr
Match: XP_008446829.1 (PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucumis melo] >XP_008446830.1 PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 1.1e-60
Identity = 197/252 (78.17%), Postives = 201/252 (79.76%), Query Frame = 0 

Query: 1   MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDH 60
           ++ +IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFG+RIISVNKAEPKMGEDMDH
Sbjct: 34  IDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDH 93

Query: 61  GYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVXXXXXXXXXXXXXXX 120
           GYRGGGYSTGGRGSYG  GGDRSARQDECFKCGRLGHWARDCPSV               
Sbjct: 94  GYRGGGYSTGGRGSYGXXGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARS 153

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
                               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 154 RLGDGDRGDRFAGDTNRYVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 213

Query: 181 XXXXXXXXXXXDRFPVXXXXXXXXXYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRP 240
           XXXXXXXXXXX     XXXXXXXXX  D G     KYGSGGPARDEGRSYRNRPAPYDRP
Sbjct: 214 XXXXXXXXXXXXXXXXXXXXXXXXXXXD-GXXXXXKYGSGGPARDEGRSYRNRPAPYDRP 273

Query: 241 SRGGRPSSFDRY 253
           SRGGRPSSFDRY
Sbjct: 274 SRGGRPSSFDRY 284

[Close]
BLAST of Cla97C05G102950 vs. NCBI nr
Match: XP_008446831.1 (PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X2 [Cucumis melo] >XP_016900248.1 PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X2 [Cucumis melo])

HSP 1 Score: 239.6 bits (610), Expect = 1.2e-59
Identity = 196/247 (79.35%), Postives = 197/247 (79.76%), Query Frame = 0 

Query: 6   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDHGYRGG 65
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFG+RIISVNKAEPKMGEDMDHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 60

Query: 66  GYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVXXXXXXXXXXXXXXXXXXXX 125
           GYSTGGRGSYG  GGDRSARQDECFKCGRLGHWARDCPSV                    
Sbjct: 61  GYSTGGRGSYGXXGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDG 120

Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 185
                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 DRGDRFAGDTNRYVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 186 XXXXXXDRFPVXXXXXXXXXYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRGGR 245
           XXXXXX     XXXXXXXXX  D G     KYGSGGPARDEGRSYRNRPAPYDRPSRGGR
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXD-GXXXXXKYGSGGPARDEGRSYRNRPAPYDRPSRGGR 240

Query: 246 PSSFDRY 253
           PSSFDRY
Sbjct: 241 PSSFDRY 246

[Close]
BLAST of Cla97C05G102950 vs. NCBI nr
Match: POF24655.1 (glycine-rich rna-binding protein rz1b [Quercus suber])

HSP 1 Score: 212.2 bits (539), Expect = 2.0e-51
Identity = 155/253 (61.26%), Postives = 173/253 (68.38%), Query Frame = 0 

Query: 1   MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDH 60
           +E +IMLE++TGRPRGFGFITF+DRRGM+DAIR+MHG+E GDR+ISVNKA+PKMGED+DH
Sbjct: 331 VECQIMLERDTGRPRGFGFITFADRRGMEDAIRDMHGRELGDRVISVNKAQPKMGEDLDH 390

Query: 61  GYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVXXXXXXXXXXXXXXX 120
           GYRGGGYS+ GRGSY  GGGDRS  QD+CFKCGR GHWARDCP                 
Sbjct: 391 GYRGGGYSSSGRGSY--GGGDRSTGQDDCFKCGRPGHWARDCP---LTGGDRSGGGGSFS 450

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
            XXXXXXXXXXXXXXXX                           XXXXXXXXXXXXXXXX
Sbjct: 451 SXXXXXXXXXXXXXXXXERDRYMDDRYDGGRYGDRDRFDSRDNKXXXXXXXXXXXXXXXX 510

Query: 181 XXXXXXXXXXXDRFPVXXXXXXXXXYRDGGPR-GIDKYGSGGPARDEGRSYRNRPAPYDR 240
           XX         DR+P           RDGGPR G ++YG+GGPAR+EGRSYRNRP PYDR
Sbjct: 511 XXIASDRYGGSDRYPQNGYGKDRAYDRDGGPRGGGNRYGNGGPARNEGRSYRNRPGPYDR 570

Query: 241 PSRGGRPSSFDRY 253
             R GRPSS DRY
Sbjct: 571 TDRAGRPSSIDRY 578

[Close]
BLAST of Cla97C05G102950 vs. NCBI nr
Match: XP_023925020.1 (glycine-rich RNA-binding protein RZ1B-like isoform X1 [Quercus suber])

HSP 1 Score: 212.2 bits (539), Expect = 2.0e-51
Identity = 155/253 (61.26%), Postives = 173/253 (68.38%), Query Frame = 0 

Query: 1   MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDH 60
           +E +IMLE++TGRPRGFGFITF+DRRGM+DAIR+MHG+E GDR+ISVNKA+PKMGED+DH
Sbjct: 34  VECQIMLERDTGRPRGFGFITFADRRGMEDAIRDMHGRELGDRVISVNKAQPKMGEDLDH 93

Query: 61  GYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVXXXXXXXXXXXXXXX 120
           GYRGGGYS+ GRGSY  GGGDRS  QD+CFKCGR GHWARDCP                 
Sbjct: 94  GYRGGGYSSSGRGSY--GGGDRSTGQDDCFKCGRPGHWARDCP---LTGGDRSGGGGSFS 153

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
            XXXXXXXXXXXXXXXX                           XXXXXXXXXXXXXXXX
Sbjct: 154 SXXXXXXXXXXXXXXXXERDRYMDDRYDGGRYGDRDRFDSRDNKXXXXXXXXXXXXXXXX 213

Query: 181 XXXXXXXXXXXDRFPVXXXXXXXXXYRDGGPR-GIDKYGSGGPARDEGRSYRNRPAPYDR 240
           XX         DR+P           RDGGPR G ++YG+GGPAR+EGRSYRNRP PYDR
Sbjct: 214 XXIASDRYGGSDRYPQNGYGKDRAYDRDGGPRGGGNRYGNGGPARNEGRSYRNRPGPYDR 273

Query: 241 PSRGGRPSSFDRY 253
             R GRPSS DRY
Sbjct: 274 TDRAGRPSSIDRY 281

[Close]
BLAST of Cla97C05G102950 vs. NCBI nr
Match: XP_023925029.1 (glycine-rich RNA-binding protein RZ1C-like isoform X2 [Quercus suber])

HSP 1 Score: 209.1 bits (531), Expect = 1.7e-50
Identity = 153/248 (61.69%), Postives = 169/248 (68.15%), Query Frame = 0 

Query: 6   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDHGYRGG 65
           MLE++TGRPRGFGFITF+DRRGM+DAIR+MHG+E GDR+ISVNKA+PKMGED+DHGYRGG
Sbjct: 1   MLERDTGRPRGFGFITFADRRGMEDAIRDMHGRELGDRVISVNKAQPKMGEDLDHGYRGG 60

Query: 66  GYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVXXXXXXXXXXXXXXXXXXXX 125
           GYS+ GRGSY  GGGDRS  QD+CFKCGR GHWARDCP                  XXXX
Sbjct: 61  GYSSSGRGSY--GGGDRSTGQDDCFKCGRPGHWARDCP---LTGGDRSGGGGSFSSXXXX 120

Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 185
           XXXXXXXXXXXX                           XXXXXXXXXXXXXXXXXX   
Sbjct: 121 XXXXXXXXXXXXERDRYMDDRYDGGRYGDRDRFDSRDNKXXXXXXXXXXXXXXXXXXIAS 180

Query: 186 XXXXXXDRFPVXXXXXXXXXYRDGGPR-GIDKYGSGGPARDEGRSYRNRPAPYDRPSRGG 245
                 DR+P           RDGGPR G ++YG+GGPAR+EGRSYRNRP PYDR  R G
Sbjct: 181 DRYGGSDRYPQNGYGKDRAYDRDGGPRGGGNRYGNGGPARNEGRSYRNRPGPYDRTDRAG 240

Query: 246 RPSSFDRY 253
           RPSS DRY
Sbjct: 241 RPSSIDRY 243

[Close]
BLAST of Cla97C05G102950 vs. TrEMBL
Match: tr|A0A1S3BGN5|A0A1S3BGN5_CUCME (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489439 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.0e-61
Identity = 197/252 (78.17%), Postives = 201/252 (79.76%), Query Frame = 0 

Query: 1   MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDH 60
           ++ +IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFG+RIISVNKAEPKMGEDMDH
Sbjct: 34  IDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDH 93

Query: 61  GYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVXXXXXXXXXXXXXXX 120
           GYRGGGYSTGGRGSYG  GGDRSARQDECFKCGRLGHWARDCPSV               
Sbjct: 94  GYRGGGYSTGGRGSYGXXGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARS 153

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
                               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 154 RLGDGDRGDRFAGDTNRYVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 213

Query: 181 XXXXXXXXXXXDRFPVXXXXXXXXXYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRP 240
           XXXXXXXXXXX     XXXXXXXXX  D G     KYGSGGPARDEGRSYRNRPAPYDRP
Sbjct: 214 XXXXXXXXXXXXXXXXXXXXXXXXXXXD-GXXXXXKYGSGGPARDEGRSYRNRPAPYDRP 273

Query: 241 SRGGRPSSFDRY 253
           SRGGRPSSFDRY
Sbjct: 274 SRGGRPSSFDRY 284

[Close]
BLAST of Cla97C05G102950 vs. TrEMBL
Match: tr|A0A1S3BFI2|A0A1S3BFI2_CUCME (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489439 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.7e-60
Identity = 196/247 (79.35%), Postives = 197/247 (79.76%), Query Frame = 0 

Query: 6   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDHGYRGG 65
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFG+RIISVNKAEPKMGEDMDHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 60

Query: 66  GYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVXXXXXXXXXXXXXXXXXXXX 125
           GYSTGGRGSYG  GGDRSARQDECFKCGRLGHWARDCPSV                    
Sbjct: 61  GYSTGGRGSYGXXGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDG 120

Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 185
                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 DRGDRFAGDTNRYVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 186 XXXXXXDRFPVXXXXXXXXXYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRGGR 245
           XXXXXX     XXXXXXXXX  D G     KYGSGGPARDEGRSYRNRPAPYDRPSRGGR
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXD-GXXXXXKYGSGGPARDEGRSYRNRPAPYDRPSRGGR 240

Query: 246 PSSFDRY 253
           PSSFDRY
Sbjct: 241 PSSFDRY 246

[Close]
BLAST of Cla97C05G102950 vs. TrEMBL
Match: tr|A0A2P4N4E3|A0A2P4N4E3_QUESU (Glycine-rich rna-binding protein rz1b OS=Quercus suber OX=58331 GN=CFP56_63288 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 155/253 (61.26%), Postives = 173/253 (68.38%), Query Frame = 0 

Query: 1   MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDH 60
           +E +IMLE++TGRPRGFGFITF+DRRGM+DAIR+MHG+E GDR+ISVNKA+PKMGED+DH
Sbjct: 331 VECQIMLERDTGRPRGFGFITFADRRGMEDAIRDMHGRELGDRVISVNKAQPKMGEDLDH 390

Query: 61  GYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVXXXXXXXXXXXXXXX 120
           GYRGGGYS+ GRGSY  GGGDRS  QD+CFKCGR GHWARDCP                 
Sbjct: 391 GYRGGGYSSSGRGSY--GGGDRSTGQDDCFKCGRPGHWARDCP---LTGGDRSGGGGSFS 450

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
            XXXXXXXXXXXXXXXX                           XXXXXXXXXXXXXXXX
Sbjct: 451 SXXXXXXXXXXXXXXXXERDRYMDDRYDGGRYGDRDRFDSRDNKXXXXXXXXXXXXXXXX 510

Query: 181 XXXXXXXXXXXDRFPVXXXXXXXXXYRDGGPR-GIDKYGSGGPARDEGRSYRNRPAPYDR 240
           XX         DR+P           RDGGPR G ++YG+GGPAR+EGRSYRNRP PYDR
Sbjct: 511 XXIASDRYGGSDRYPQNGYGKDRAYDRDGGPRGGGNRYGNGGPARNEGRSYRNRPGPYDR 570

Query: 241 PSRGGRPSSFDRY 253
             R GRPSS DRY
Sbjct: 571 TDRAGRPSSIDRY 578

[Close]
BLAST of Cla97C05G102950 vs. TrEMBL
Match: tr|A0A2N9I9S0|A0A2N9I9S0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48493 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.3e-50
Identity = 152/248 (61.29%), Postives = 165/248 (66.53%), Query Frame = 0 

Query: 6   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDHGYRGG 65
           MLE+ TGRPRGFGFITF+DRRGM+DAIREMHG+E GDR+ISVNKA+PKMGED DHG+RGG
Sbjct: 1   MLERETGRPRGFGFITFADRRGMEDAIREMHGRELGDRVISVNKAQPKMGEDSDHGFRGG 60

Query: 66  GYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVXXXXXXXXXXXXXXXXXXXX 125
           GYS+ GRGSY  GGGDRSA QD+CFKCGR GHWARDCPS                     
Sbjct: 61  GYSSVGRGSY--GGGDRSAGQDDCFKCGRSGHWARDCPSAGGDRGGGGGSFSSRSRLGGA 120

Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 185
                                             XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SGRGDRFGGERERYMDDRYDGGRYGDKNRFDSREXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 186 XXXXXXDRFPVXXXXXXXXXYRDGGPR-GIDKYGSGGPARDEGRSYRNRPAPYDRPSRGG 245
           XXXXXX +             RDGGPR G D+YGSGGPAR+EGRSYRN+P PYDRP R G
Sbjct: 181 XXXXXXXQ---NGYGKDRSYDRDGGPRGGGDRYGSGGPARNEGRSYRNKPGPYDRPDRAG 240

Query: 246 RPSSFDRY 253
           RPSSFD Y
Sbjct: 241 RPSSFDHY 243

[Close]
BLAST of Cla97C05G102950 vs. TrEMBL
Match: tr|A0A0D2RS21|A0A0D2RS21_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G235100 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 9.5e-50
Identity = 171/252 (67.86%), Postives = 186/252 (73.81%), Query Frame = 0 

Query: 1   MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGEDMDH 60
           +E +IMLE++TGRPRGFGFITF+DRR MD+AIREMHG+E G+R ISVNKA+PKMGED+DH
Sbjct: 34  LESQIMLERDTGRPRGFGFITFADRRSMDEAIREMHGRELGERTISVNKAQPKMGEDLDH 93

Query: 61  GYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPSVXXXXXXXXXXXXXXX 120
           GYR GGYS+ GRG Y   GGDR   QDECFKCGR GHWARDCPS                
Sbjct: 94  GYR-GGYSSSGRGRY--AGGDRPVAQDECFKCGRFGHWARDCPSA-----GGGRGGSGGM 153

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX 
Sbjct: 154 FSSRSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXXXT 213

Query: 181 XXXXXXXXXXXDRFPVXXXXXXXXXYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRP 240
                      DRFP          YRD  PRG D+YG+GGPAR++GRSYRNR  PYDRP
Sbjct: 214 GDRFGDRYAGSDRFP-QNGFGKERGYRDVAPRGNDRYGAGGPARNDGRSYRNRTGPYDRP 273

Query: 241 SRGGRPSSFDRY 253
             GGRPSSFDRY
Sbjct: 274 GMGGRPSSFDRY 276

[Close]
BLAST of Cla97C05G102950 vs. Swiss-Prot
Match: sp|O22703|RZ1B_ARATH (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-31
Identity = 171/264 (64.77%), Postives = 193/264 (73.11%), Query Frame = 0 

Query: 2   EEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKM-GEDMDH 61
           E +IM+ ++TGRPRGFGFITF+DRRG DDAI+ MHG+E G+++ISVNKAEPK+ GED+D 
Sbjct: 40  ECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQ 99

Query: 62  GYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPS---------VXXXXXX 121
             +GGGYS+ G+G+           +DECFKC R GHWARDCPS         V      
Sbjct: 100 LKKGGGYSSRGKGT-----------EDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRS 159

Query: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 160 RIGDIDGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 219

Query: 182 XXXXXXXXXXXXXXXXXXXXDRFPVXXXXXXXXXY-RDGGPRGI-DKYGSGGPARDEGRS 241
           XXXXXXXXXXXXXXXXXXXX     XXX      Y RD   R   D+YG  GP RDEGR 
Sbjct: 220 XXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRERSYDRDRYARDTSDRYGDMGPIRDEGRP 279

Query: 242 YRNRPAPYDRPSR-GGRPSSFDRY 253
           YR+RP PYDRPSR GGRPSS++R+
Sbjct: 280 YRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Cla97C05G102950 vs. Swiss-Prot
Match: sp|Q8RWN5|RZ1C_ARATH (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-31
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 0 

Query: 4   KIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGED--MDHG 63
           +IMLE++TGR RGFGFITF+DRR MD++IREMHG++FGDR+ISVN+AEPK+G D    HG
Sbjct: 37  QIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHG 96

Query: 64  YRGG---GYSTGGRGSY-GSGGGDRSARQDECFKCGRLGHWARDCPS 105
            RGG   GYS  G+GS+           +DECFKCGR+GHWARDCPS
Sbjct: 97  SRGGRDSGYSIAGKGSFXXXXXXXXXVGEDECFKCGRVGHWARDCPS 143

[Close]
BLAST of Cla97C05G102950 vs. Swiss-Prot
Match: sp|Q9LIN3|RZ1A_ARATH (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.6e-14
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 1   MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMG----- 60
           +E K++L+K +GR RGFGFITF +++ MD+AI  M+G +   R I+V+KA+P  G     
Sbjct: 34  VEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRD 93

Query: 61  EDMDHGYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPS 105
                             S G GGGD       CFKCG+ GH+AR+CPS
Sbjct: 94  XXXXXXXXXXXXXXXXXXSGGRGGGD-------CFKCGKPGHFARECPS 135

[Close]
BLAST of Cla97C05G102950 vs. Swiss-Prot
Match: sp|Q05966|GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.4e-09
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 1  MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMG 56
          ++ KI+ ++ TGR RGFGF+TF D + M DAI EM+G+E   R I+VN+A+ + G
Sbjct: 33 IDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGG 87

[Close]
BLAST of Cla97C05G102950 vs. Swiss-Prot
Match: sp|Q03251|RBG8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.4e-09
Identity = 25/53 (47.17%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 1  MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPK 54
          ++ KI+ ++ +GR RGFGF+TF D + M DAI EM+G+E   R+I+VN+A+ +
Sbjct: 33 IDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85

[Close]
BLAST of Cla97C05G102950 vs. TAIR10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-32
Identity = 171/264 (64.77%), Postives = 193/264 (73.11%), Query Frame = 0 

Query: 2   EEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKM-GEDMDH 61
           E +IM+ ++TGRPRGFGFITF+DRRG DDAI+ MHG+E G+++ISVNKAEPK+ GED+D 
Sbjct: 40  ECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQ 99

Query: 62  GYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPS---------VXXXXXX 121
             +GGGYS+ G+G+           +DECFKC R GHWARDCPS         V      
Sbjct: 100 LKKGGGYSSRGKGT-----------EDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRS 159

Query: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 160 RIGDIDGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 219

Query: 182 XXXXXXXXXXXXXXXXXXXXDRFPVXXXXXXXXXY-RDGGPRGI-DKYGSGGPARDEGRS 241
           XXXXXXXXXXXXXXXXXXXX     XXX      Y RD   R   D+YG  GP RDEGR 
Sbjct: 220 XXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRERSYDRDRYARDTSDRYGDMGPIRDEGRP 279

Query: 242 YRNRPAPYDRPSR-GGRPSSFDRY 253
           YR+RP PYDRPSR GGRPSS++R+
Sbjct: 280 YRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Cla97C05G102950 vs. TAIR10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-32
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 0 

Query: 4   KIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMGED--MDHG 63
           +IMLE++TGR RGFGFITF+DRR MD++IREMHG++FGDR+ISVN+AEPK+G D    HG
Sbjct: 37  QIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHG 96

Query: 64  YRGG---GYSTGGRGSY-GSGGGDRSARQDECFKCGRLGHWARDCPS 105
            RGG   GYS  G+GS+           +DECFKCGR+GHWARDCPS
Sbjct: 97  SRGGRDSGYSIAGKGSFXXXXXXXXXVGEDECFKCGRVGHWARDCPS 143

[Close]
BLAST of Cla97C05G102950 vs. TAIR10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-15
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 1   MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPKMG----- 60
           +E K++L+K +GR RGFGFITF +++ MD+AI  M+G +   R I+V+KA+P  G     
Sbjct: 34  VEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRD 93

Query: 61  EDMDHGYRGGGYSTGGRGSYGSGGGDRSARQDECFKCGRLGHWARDCPS 105
                             S G GGGD       CFKCG+ GH+AR+CPS
Sbjct: 94  XXXXXXXXXXXXXXXXXXSGGRGGGD-------CFKCGKPGHFARECPS 135

[Close]
BLAST of Cla97C05G102950 vs. TAIR10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-10
Identity = 25/53 (47.17%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 1  MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPK 54
          ++ KI+ ++ +GR RGFGF+TF D + M DAI EM+G+E   R+I+VN+A+ +
Sbjct: 33 IDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85

[Close]
BLAST of Cla97C05G102950 vs. TAIR10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-09
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 1  MEEKIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGDRIISVNKAEPK 54
          ++ KI+ ++ TGR RGFGF+TF D + M DAI  M+GQ+   R I+VN+A+ +
Sbjct: 35 IDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87

The following BLAST results are available for this feature:
BLAST of Cla97C05G102950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446829.11.1e-6078.17PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucumis melo] ... [more]
XP_008446831.11.2e-5979.35PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X2 [Cucumis melo] ... [more]
POF24655.12.0e-5161.26glycine-rich rna-binding protein rz1b [Quercus suber][more]
XP_023925020.12.0e-5161.26glycine-rich RNA-binding protein RZ1B-like isoform X1 [Quercus suber][more]
XP_023925029.11.7e-5061.69glycine-rich RNA-binding protein RZ1C-like isoform X2 [Quercus suber][more]
BLAST of Cla97C05G102950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BGN5|A0A1S3BGN5_CUCME7.0e-6178.17glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S3BFI2|A0A1S3BFI2_CUCME7.7e-6079.35glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2P4N4E3|A0A2P4N4E3_QUESU1.3e-5161.26Glycine-rich rna-binding protein rz1b OS=Quercus suber OX=58331 GN=CFP56_63288 P... [more]
tr|A0A2N9I9S0|A0A2N9I9S0_FAGSY3.3e-5061.29Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48493 PE=4 SV=1[more]
tr|A0A0D2RS21|A0A0D2RS21_GOSRA9.5e-5067.86Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G235100 PE=4 ... [more]
BLAST of Cla97C05G102950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22703|RZ1B_ARATH2.7e-3164.77Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE... [more]
sp|Q8RWN5|RZ1C_ARATH4.6e-3163.55Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE... [more]
sp|Q9LIN3|RZ1A_ARATH8.6e-1441.28Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE... [more]
sp|Q05966|GRP10_BRANA6.4e-0949.09Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1[more]
sp|Q03251|RBG8_ARATH8.4e-0947.17Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 ... [more]
BLAST of Cla97C05G102950 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G60650.11.5e-3264.77RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT5G04280.12.5e-3263.55RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT3G26420.14.8e-1541.28RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT4G39260.14.6e-1047.17cold, circadian rhythm, and RNA binding 1[more]
AT2G21660.12.3e-0947.17cold, circadian rhythm, and rna binding 2[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR036875Znf_CCHC_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR001878Znf_CCHC
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005488 binding
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G102950.1Cla97C05G102950.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 88..104
e-value: 1.3E-5
score: 34.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 88..104
e-value: 1.8E-8
score: 34.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 89..104
score: 11.087
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 5..45
e-value: 3.8E-9
score: 36.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..52
score: 11.213
NoneNo IPR availableGENE3DG3DSA:4.10.60.10coord: 85..113
e-value: 1.7E-8
score: 36.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..175
NoneNo IPR availablePANTHERPTHR44993FAMILY NOT NAMEDcoord: 2..252
NoneNo IPR availablePANTHERPTHR44993:SF1GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-RELATEDcoord: 2..252
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 2..84
e-value: 2.5E-14
score: 55.5
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILYSSF57756Retrovirus zinc finger-like domainscoord: 80..104
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 4..82

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G102950Cla013740Watermelon (97103) v1wmwmbB092
Cla97C05G102950Cla020538Watermelon (97103) v1wmwmbB207
Cla97C05G102950Csa5G622570Cucumber (Chinese Long) v2cuwmbB383
Cla97C05G102950MELO3C019833Melon (DHL92) v3.5.1mewmbB299
Cla97C05G102950ClCG08G007820Watermelon (Charleston Gray)wcgwmbB328
Cla97C05G102950Cucsa.308610Cucumber (Gy14) v1cgywmbB533
Cla97C05G102950CmaCh04G025520Cucurbita maxima (Rimu)cmawmbB769
Cla97C05G102950CmoCh04G026690Cucurbita moschata (Rifu)cmowmbB741
Cla97C05G102950CmoCh04G014620Cucurbita moschata (Rifu)cmowmbB729
Cla97C05G102950Lsi04G000930Bottle gourd (USVL1VR-Ls)lsiwmbB284
Cla97C05G102950MELO3C019833.2Melon (DHL92) v3.6.1medwmbB286
Cla97C05G102950Carg20711Silver-seed gourdcarwmbB0507
Cla97C05G102950Carg01935Silver-seed gourdcarwmbB0878
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla97C05G102950Cla97C08G150570Watermelon (97103) v2wmbwmbB143
The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G102950Silver-seed gourdcarwmbB0711
Cla97C05G102950Cucumber (Gy14) v2cgybwmbB365
Cla97C05G102950Cucurbita maxima (Rimu)cmawmbB423
Cla97C05G102950Cucurbita maxima (Rimu)cmawmbB758
Cla97C05G102950Cucurbita moschata (Rifu)cmowmbB403
Cla97C05G102950Wild cucumber (PI 183967)cpiwmbB402
Cla97C05G102950Cucumber (Chinese Long) v3cucwmbB398
Cla97C05G102950Bottle gourd (USVL1VR-Ls)lsiwmbB439
Cla97C05G102950Melon (DHL92) v3.6.1medwmbB056
Cla97C05G102950Melon (DHL92) v3.5.1mewmbB060
Cla97C05G102950Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G102950Wax gourdwgowmbB309
Cla97C05G102950Wax gourdwgowmbB532