Carg20711 (gene) Silver-seed gourd

Overview
NameCarg20711
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionGlycine-rich RNA-binding protein like
LocationCucurbita_argyrosperma_scaffold_107 : 291352 .. 296533 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTATTTTCTAGGGTTCTTCAGGAATCTCTAGAAGGAAACGAGGGTTCATTCTTTGAGGATATTTCACACTACACAGCACGAACAAGGTATTGCCATTCTCTATCTTCGTTACTTTCTTCTAAATCATAGAATCAATTGTTATTTTCGGTGGGAAGCACTTGATGAATGTTGTTTCTCGTTGATTTCCGTTCAACTTTGTTCTTGGATTTCCCTAATTACTCTGGATTTTGTTTGCAGGAGGAGTTTTCTGAAATACGGTGTTGATATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGGTTACCCTTTGTGATTTACTTTTTGATTTTTGGTTTGATCTGTGTGGCTGGAAATCGAAGAAACTGAGCACGTTGGAATGAGTAATTAATCTGTTTCTGATATGAGAAGGAAATTGAGGAGATTTTGGATTAATTCGGTTTCATTTCAGTGTTATTGATCTTATGGAAAATATAATTTCTGAATTTCCACTCCCTTCCCTCTAAATAACCTTGCCCTGTAAGTTTAACTATTACTTTCAGCTTTTTTTTTTAACCTTTAATTTGTCTCCGTCCTCTTCTCTTTCTGATGAATGTTTTTTTCCCCTTGTGAATGAGGATGCTGTTAATGAAATTTTTGGGAAGCGGTTTAACTGTTCATGAGAAGTTGAATGCATCAAGATGCTGAAGGTCATAGGGTTGTACGTTGGTTAAGCATTATCTGTTTAAGATCTGCTGGTTAAGAAAAAGTACTATCAGTCTGGAAATTTGGAATATGGTTGGCGGCAAACTCAATCTCGTTCTCTAGCTGATTGGGGTTTGGTGGGATTTTAGTTTGCGAACTCAGTGACTAACTTGTTCTGTGGGATAAAAGTACTCGTCATTCTTTTGCGACAGATAAATGATTTAATACCAGAGTAACTATTAACAAGTCATGTGCTGATACCTGCTCGAGCATACCTTCCTGTCTTATTGTTATTTGATGCTTTTGAAGAAGAAACTGAAGTCACTAAAATGTTGTGTATTCGAGAAATAAAATGTTCTAGTATTTGCTTGGAGAATTTTATCTTTCTCTGGATGATTATTAAACCCTCCATCTTATCCTTGGCTTACCCTACTTTCCAATGGTATGACTAAAATTTAATGATGAAGTTATGTGGTTACATGAGATGATGTACCTGGGGCAGAAGTTCTGGGCTAGACTACCATATTGACTCAGATAATTGGTTTGCTAAGTCATCTAATCACAGAAAATTTCTGTAGACATTTGTCATTGGATGCAAAATTTTGTTGTCCAAAGATTGTTTCATACTACTGGCTGCTTCATTGTAATGTTCTCTTCGTTTCCCTATCCTTTACTGTAATCATTAGCAGAGTGAGAGATAGCTGGTTTTTCATTTGCTAGTTTCACTGGTGTTGAGAGTTGTCAGTGTTCTAAGATGAAGAATACGTTGAATTGGTGCCTCCTTTTTGGCTAAGATTTATGATACCGTACAAGGTGCAGTGTTTGGAGATCAATAGCCATTTTATCCTTTTGAGTAGGCACTGCTTCTTTGAATTCATTTTGCTGAGGTAAATCAGAGTTCCCTACTTGTCCAGGCATAATCAGAAAGTTGTTCGTATTGGTTTTTGTTCAGCAGTTGATGTGGCTAGAAATTGTACTAGCAATTCCAGGCTTAGCTGCTCAGACATTTTCCGAAGAATTGGCCAAAATGCATTTGTAGTCTTTAGTTTGACATATTTCCTTGTTGTACAAAGATAGCTGAATTGTAAATGTCAGTTTGAGTGCCTTCTCATATCGGTTGTTGTCATCTCTGGTGAAAATGTTAAGATACTATACAGTGGACATGGAGAATGGACGTTGACGTGGTTATTATTGCCATTTGTACTTTCCAGATCTCTAAAGGCCTCTGATGCTGGATTTCTTTCTGTTTGACCAAGCATTATGGATATCTATTTGTTGGGTATAGACTGCAGCAAAGCAATTGGATCTGAAGCTAAATTTGAGTGTCTTTAGGTGCAGTGTTGCAGGTTGGGTTTTTTATGAGTTATTTAGAGGAATGGATTTAGGTTGTGGCAACCTGAGAAATTATGGAGCTTTAGTTTTCCATCCATTGGTTTTCAACCTTTTCCCGTTGTTTGAAGTTGTTCCTTGAGATCGGTCCAGAATTCTGCTATTTTGTTTTCCTTTTTTGTGGTGTGCTAGTTCCCTCATTTTATACTCGTTGACAGTATTTTGTGTTATCAGAGTTTGAATTCCTCGATTATTGATTCTATTTAAACTTAAGAGGGGTTGAATATGTACCTAGTTAAGTACGGTTGCCATGCAAGCTGTTGTCTGTAATCAAGTTTTCTAGTACATCCTCTTGTCCACAAACTGCTGACGGGATCTCAATTACAGAATGTGCTGGCATCTCCAACTTGCCTATGTCTCCTAGAGTATTCATCTTGGAAGATGTGTTGCTTAAGGATTCATCTTTCAGATTTATTCCACCATCTATTTCAGATCTCATCCCAATATGGTATTGATAGCAAGATGGCTATAAAATTCTTGTGTTTCCCTTGTGTGTTATTTGTTGAGGTTAACAAATCCCGGAATAATACACATATCCAGTGAAGTGTTTGTACTGGGTTTTTTTGAGTCAACATTGGATTTGAGTGCCATTTTGGATGCCTGACTGCACAGAACCCATGTAGCAATTTTTTTTGTGGAGTTGTTTCTTTTGAATAAAAGGGACTAGAGGTCTAAGATACTCCCACTTCAGAAGATAGAGATAAAGACATGCAGGTTCTTTTGTTTTGTTAAGGAATTATGTAACATGTTGCAATGAGTTCTTCATAAATGGAAGAAACAAGTAAGTTTGTCAGACTGTTTAAAATATTTTATGCTGTTATTATCAATTACTATAAGTTTAAACTTTGAACGATTTCTCTTTTAGATGTTGTACTTATCGTGCATACACCATGTGATAGGCCGAATGTCATCACCAGCTTGTTCCTGTAACTTATCTGTTACCATATTTGCTGAATGATAGTTTAATGGAGTTTTATCCTCTAATTTGTTGATCATGGCAACTGTTTGGTATTGATTTTATACCTCTTAGATTCACCTCGTTTTCAACGACTCCAACCTTCAGAGTGTTGTCACATGGGATCTTAAATACCAAAACAAAATCACCTTATATTGGTGGTTAGGGCATAGATTTCATCATGAAACATGTCATCTTTGAATATTGAGTAGATGGAATCCTGGGCTATTTATTTATCTTTCATTGTGATGGTCTTCTTCGTCACTTGATTAATGCCAGGTTTTGTTATGTTAGACAAATTTTCTTCATAATCTAGTTTCGAGCTATGCTGATGGCTTGTAGGTTTGAAGTTGTCACTTGCATTATTAGCATGAGATGTACTTTACTAGCTCTGATTTAAGTTCTATGGTCTGTTTTATTGACTGGCGTAAACTTCCTCTTTGGCGTTCCTGTAGATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCACGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGGAGTCGCGATCGCTATGTTAGTGACAGGTAATGACCGATATTTCTATGGATTTGAATTTTATTTTGTGTGTATAAAATATGTTTGTTATTTTTCTAGTCTTAAAATTTATCCTTTTAAAGTAATTATCACTAGAATACGATAAATTAACAGAAGAGTGATCCAATATCCTTCGTTTTGCTGAGTAATCACATGACTTCTCAATTAATTCCTTGCAGCATTATACTTGATCAATCCTCTCATCCCTATAGGTACCCACCCAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGAATGTCGACTATTAATTAGCACATTATCAGTTTTATCTAGTAAGTACTACACGCACGGTGTCGTCGAACTTTTAGTCATCTAGGATATAGTTTACTGTACCATGGCCTGCCAGCAGATCGCTGCTGTTTCATCTTGCTTTCATGTATCTGATAATGGGAATAGAACTGATTTAAGTCGACCCTGAAATGTCGAGCCGAATCTTCGAGGACTCGAAGCTCATTCGAATTAGGAAATAGAAGTGTAGAAGTCAGAGGGCACCCTACATGAAAGGGGCATGAATGGCAGACCAGAAGTCTCCTCTCAGTTAAGAGTGGAAAGGTAAGAGAGGCCATTAATGGAAGAAAAATGGTATGGTTTGGCCCACAACTATTGGAATTGTTGACTTGCCCTTAATCCAGCCCCACTGTCTTGACATGTACTTGCAATGGCACTATTTTCGTCGGCTCTTGTTCATGATTTACTTGACTTTAGTTTTTGTGGAAAAATTAGAGAAGAAAGTGTAGTTTTTGATTGGTTGACTATAAAACCCACTTGCAAATTGGTGTCCTCCCATCCCTTTTTTTGTTTTAATTTATTTATTTACATATTTATATCTGGGTCTTAAATTTTTAATTATGGTTACATGATCGACTTATTTACGTATTAATTTTTTT

mRNA sequence

TATTTATTTTCTAGGGTTCTTCAGGAATCTCTAGAAGGAAACGAGGGTTCATTCTTTGAGGATATTTCACACTACACAGCACGAACAAGGAGGAGTTTTCTGAAATACGGTGTTGATATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGGTTACCCTTTGTGATTTACTTTTTGATTTTTGGTTTGATCTGTGTGGCTGGAAATCGAAGAAACTGAGCACGTTGGAATGAGTAATTAATCTGTTTCTGATATGAGAAGGAAATTGAGGAGATTTTGGATTAATTCGGTTTCATTTCAGTGTTATTGATCTTATGGAAAATATAATTTCTGAATTTCCACTCCCTTCCCTCTAAATAACCTTGCCCTGTAAGTTTAACTATTACTTTCAGCTTTTTTTTTTAACCTTTAATTTGTCTCCGTCCTCTTCTCTTTCTGATGAATGTTTTTTTCCCCTTGTGAATGAGGATGCTGTTAATGAAATTTTTGGGAAGCGGTTTAACTGTTCATGAGAAGTTGAATGCATCAAGATGCTGAAGGTCATAGGGTTGTACGTTGGTTAAGCATTATCTGTTTAAGATCTGCTGGTTAAGAAAAAGTACTATCAGTCTGGAAATTTGGAATATGGTTGGCGGCAAACTCAATCTCGTTCTCTAGCTGATTGGGGTTTGGTGGGATTTTAGTTTGCGAACTCAGTGACTAACTTGTTCTGTGGGATAAAAGTACTCGTCATTCTTTTGCGACAGATAAATGATTTAATACCAGAGTAACTATTAACAAGTCATGTGCTGATACCTGCTCGAGCATACCTTCCTGTCTTATTGTTATTTGATGCTTTTGAAGAAGAAACTGAAGTCACTAAAATGTTGTGTATTCGAGAAATAAAATGTTCTAGTATTTGCTTGGAGAATTTTATCTTTCTCTGGATGATTATTAAACCCTCCATCTTATCCTTGGCTTACCCTACTTTCCAATGGTATGACTAAAATTTAATGATGAAGTTATGTGGTTACATGAGATGATGTACCTGGGGCAGAAGTTCTGGGCTAGACTACCATATTGACTCAGATAATTGGTTTGCTAAGTCATCTAATCACAGAAAATTTCTGTAGACATTTGTCATTGGATGCAAAATTTTGTTGTCCAAAGATTGTTTCATACTACTGGCTGCTTCATTGTAATGTTCTCTTCGTTTCCCTATCCTTTACTGTAATCATTAGCAGAGTGAGAGATAGCTGGTTTTTCATTTGCTAGTTTCACTGGTGTTGAGAGTTGTCAGTGTTCTAAGATGAAGAATACGTTGAATTGGTGCCTCCTTTTTGGCTAAGATTTATGATACCGTACAAGGTGCAGTGTTTGGAGATCAATAGCCATTTTATCCTTTTGAGTAGGCACTGCTTCTTTGAATTCATTTTGCTGAGGTAAATCAGAGTTCCCTACTTGTCCAGGCATAATCAGAAAGTTGTTCGTATTGGTTTTTGTTCAGCAGTTGATGTGGCTAGAAATTGTACTAGCAATTCCAGGCTTAGCTGCTCAGACATTTTCCGAAGAATTGGCCAAAATGCATTTGTAGTCTTTAGTTTGACATATTTCCTTGTTGTACAAAGATAGCTGAATTGTAAATGTCAGTTTGAGTGCCTTCTCATATCGGTTGTTGTCATCTCTGGTGAAAATGTTAAGATACTATACAGTGGACATGGAGAATGGACGTTGACGTGGTTATTATTGCCATTTGTACTTTCCAGATCTCTAAAGGCCTCTGATGCTGGATTTCTTTCTGTTTGACCAAGCATTATGGATATCTATTTGTTGGGTATAGACTGCAGCAAAGCAATTGGATCTGAAGCTAAATTTGAGTGTCTTTAGGTGCAGTGTTGCAGGTTGGGTTTTTTATGAGTTATTTAGAGGAATGGATTTAGGTTGTGGCAACCTGAGAAATTATGGAGCTTTAGTTTTCCATCCATTGGTTTTCAACCTTTTCCCGTTGTTTGAAGTTGTTCCTTGAGATCGGTCCAGAATTCTGCTATTTTGTTTTCCTTTTTTGTGGTGTGCTAGTTCCCTCATTTTATACTCGTTGACAGTATTTTGTGTTATCAGAGTTTGAATTCCTCGATTATTGATTCTATTTAAACTTAAGAGGGGTTGAATATGTACCTAGTTAAGTACGGTTGCCATGCAAGCTGTTGTCTGTAATCAAGTTTTCTAGTACATCCTCTTGTCCACAAACTGCTGACGGGATCTCAATTACAGAATGTGCTGGCATCTCCAACTTGCCTATGTCTCCTAGAGTATTCATCTTGGAAGATGTGTTGCTTAAGGATTCATCTTTCAGATTTATTCCACCATCTATTTCAGATCTCATCCCAATATGGTATTGATAGCAAGATGGCTATAAAATTCTTGTGTTTCCCTTGTGTGTTATTTGTTGAGGTTAACAAATCCCGGAATAATACACATATCCAGTGAAGTGTTTGTACTGGGTTTTTTTGAGTCAACATTGGATTTGAGTGCCATTTTGGATGCCTGACTGCACAGAACCCATGTAGCAATTTTTTTTGTGGAGTTGTTTCTTTTGAATAAAAGGGACTAGAGGTCTAAGATACTCCCACTTCAGAAGATAGAGATAAAGACATGCAGGTTCTTTTGTTTTGTTAAGGAATTATGTAACATGTTGCAATGAGTTCTTCATAAATGGAAGAAACAAATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCACGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGGAGTCGCGATCGCTATGTTAGTGACAGGTACCCACCCAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGAATGTCGACTATTAATTAGCACATTATCAGTTTTATCTAGTAAGTACTACACGCACGGTGTCGTCGAACTTTTAGTCATCTAGGATATAGTTTACTGTACCATGGCCTGCCAGCAGATCGCTGCTGTTTCATCTTGCTTTCATGTATCTGATAATGGGAATAGAACTGATTTAAGTCGACCCTGAAATGTCGAGCCGAATCTTCGAGGACTCGAAGCTCATTCGAATTAGGAAATAGAAGTGTAGAAGTCAGAGGGCACCCTACATGAAAGGGGCATGAATGGCAGACCAGAAGTCTCCTCTCAGTTAAGAGTGGAAAGGTAAGAGAGGCCATTAATGGAAGAAAAATGGTATGGTTTGGCCCACAACTATTGGAATTGTTGACTTGCCCTTAATCCAGCCCCACTGTCTTGACATGTACTTGCAATGGCACTATTTTCGTCGGCTCTTGTTCATGATTTACTTGACTTTAGTTTTTGTGGAAAAATTAGAGAAGAAAGTGTAGTTTTTGATTGGTTGACTATAAAACCCACTTGCAAATTGGTGTCCTCCCATCCCTTTTTTTGTTTTAATTTATTTATTTACATATTTATATCTGGGTCTTAAATTTTTAATTATGGTTACATGATCGACTTATTTACGTATTAATTTTTTT

Coding sequence (CDS)

ATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCACGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGTGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGGAGTCGCGATCGCTATGTTAGTGACAGGTACCCACCCAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGA

Protein sequence

MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Homology
[Close]
BLAST of Carg20711 vs. NCBI nr
Match: XP_022945121.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 389.4 bits (999), Expect = 8.9e-105
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX
Sbjct: 39  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 98

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 120
           XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD
Sbjct: 99  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 158

Query: 121 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX 180
           SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX
Sbjct: 159 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX 218

Query: 181 XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 240
           XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR
Sbjct: 219 XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 278

Query: 241 PSSFDRY 248
           PSSFDRY
Sbjct: 279 PSSFDRY 285

[Close]
BLAST of Carg20711 vs. NCBI nr
Match: XP_022945122.1 (glycine-rich RNA-binding protein RZ1C-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 389.4 bits (999), Expect = 8.9e-105
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 120
           XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 120

Query: 121 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX 180
           SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX
Sbjct: 121 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 240
           XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR
Sbjct: 181 XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 240

Query: 241 PSSFDRY 248
           PSSFDRY
Sbjct: 241 PSSFDRY 247

[Close]
BLAST of Carg20711 vs. NCBI nr
Match: XP_023541916.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023541917.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023541918.1 glycine-rich RNA-binding protein RZ1C-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385.2 bits (988), Expect = 1.7e-103
Identity = 244/247 (98.79%), Postives = 244/247 (98.79%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG 
Sbjct: 39  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG- 98

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 120
            XXXXXXXXXXXXXXXXXX ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD
Sbjct: 99  GXXXXXXXXXXXXXXXXXXSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 158

Query: 121 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX 180
           SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX
Sbjct: 159 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX 218

Query: 181 XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 240
           XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR
Sbjct: 219 XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 278

Query: 241 PSSFDRY 248
           PSSFDRY
Sbjct: 279 PSSFDRY 284

[Close]
BLAST of Carg20711 vs. NCBI nr
Match: XP_023541919.1 (glycine-rich RNA-binding protein RZ1C-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385.2 bits (988), Expect = 1.7e-103
Identity = 244/247 (98.79%), Postives = 244/247 (98.79%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG 
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 120
            XXXXXXXXXXXXXXXXXX ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD
Sbjct: 61  GXXXXXXXXXXXXXXXXXXSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 120

Query: 121 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX 180
           SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX
Sbjct: 121 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 240
           XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR
Sbjct: 181 XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 240

Query: 241 PSSFDRY 248
           PSSFDRY
Sbjct: 241 PSSFDRY 246

[Close]
BLAST of Carg20711 vs. NCBI nr
Match: XP_022966702.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 383.6 bits (984), Expect = 4.9e-103
Identity = 240/247 (97.17%), Postives = 241/247 (97.57%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG 
Sbjct: 39  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG- 98

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 120
            XXXXXXXXXXXXXXXXXX ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD
Sbjct: 99  GXXXXXXXXXXXXXXXXXXSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGD 158

Query: 121 SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXXX 180
           S+YGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRD  V DRYPPXXXXXXXXX
Sbjct: 159 SEYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPXXXXXXXXX 218

Query: 181 XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 240
           XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR
Sbjct: 219 XXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGR 278

Query: 241 PSSFDRY 248
           PSSFDRY
Sbjct: 279 PSSFDRY 284

[Close]
BLAST of Carg20711 vs. TAIR10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 128.6 bits (322), Expect = 5.2e-30
Identity = 124/263 (47.15%), Postives = 143/263 (54.37%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRG 60
           M+ ++TGRPRGFGFITF+DRRG DDAI+ MHG+E G ++ISVNKAEPK+ GED+D   +G
Sbjct: 44  MVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKG 103

Query: 61  XXXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRL 120
                                  +DECFKC RPGHWARDCP  G  R R       R R+
Sbjct: 104 -------------GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRI 163

Query: 121 GDSDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXX 180
           GD D G R                                    XX X     XXXXXXX
Sbjct: 164 GDID-GHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 223

Query: 181 XXXXXXXXXXXXXXXXXXXXXYRDGGPRG--------------VDKYESSGPARNEGRSY 240
           XXXXXXXXXXXXXXXXXXXXX      RG               D+Y   GP R+EGR Y
Sbjct: 224 XXXXXXXXXXXXXXXXXXXXXXXXXXXRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPY 283

Query: 241 RNRPAPYDRPSRAAGRPSSFDRY 248
           R+RP PYDRPSR  GRPSS++R+
Sbjct: 284 RSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Carg20711 vs. TAIR10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-29
Identity = 81/143 (56.64%), Postives = 95/143 (66.43%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGED--MDHGYR 60
           MLE++TGR RGFGFITF+DRR MD++IREMHG++FG+R+ISVN+AEPK+G D    HG R
Sbjct: 39  MLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSR 98

Query: 61  G--XXXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRP 120
           G              XXXXXXXXX  +DECFKCGR GHWARDCP  GG GRGG      P
Sbjct: 99  GGRDSGYSIAGKGSFXXXXXXXXXVGEDECFKCGRVGHWARDCPSAGG-GRGG------P 158

Query: 121 RLGDSDYGDRFAGDNNRYVDDRY 140
             G S     + G + R   DRY
Sbjct: 159 VGGFSSRASAYGGSDGRV--DRY 172

[Close]
BLAST of Carg20711 vs. TAIR10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-14
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           +L+K +GR RGFGFITF +++ MD+AI  M+G +   R I+V+KA+P  G       R X
Sbjct: 39  VLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQG----GAGRDX 98

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGG 110
           XXXXXXXXXXXXXXXXX       +CFKCG+PGH+AR+CP    R  GG
Sbjct: 99  XXXXXXXXXXXXXXXXXSGGRGGGDCFKCGKPGHFARECPSESSRDGGG 143

[Close]
BLAST of Carg20711 vs. TAIR10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-08
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 3  EKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPK 49
          ++ +GR RGFGF+TF D + M DAI EM+G+E   R+I+VN+A+ +
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85

[Close]
BLAST of Carg20711 vs. TAIR10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 54.7 bits (130), Expect = 9.5e-08
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 3  EKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPK 49
          ++ TGR RGFGF+TF D + M DAI  M+GQ+   R I+VN+A+ +
Sbjct: 42 DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87

[Close]
BLAST of Carg20711 vs. Swiss-Prot
Match: sp|O22703|RZ1B_ARATH (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.3e-29
Identity = 124/263 (47.15%), Postives = 143/263 (54.37%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRG 60
           M+ ++TGRPRGFGFITF+DRRG DDAI+ MHG+E G ++ISVNKAEPK+ GED+D   +G
Sbjct: 44  MVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKG 103

Query: 61  XXXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRL 120
                                  +DECFKC RPGHWARDCP  G  R R       R R+
Sbjct: 104 -------------GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRI 163

Query: 121 GDSDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXX 180
           GD D G R                                    XX X     XXXXXXX
Sbjct: 164 GDID-GHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 223

Query: 181 XXXXXXXXXXXXXXXXXXXXXYRDGGPRG--------------VDKYESSGPARNEGRSY 240
           XXXXXXXXXXXXXXXXXXXXX      RG               D+Y   GP R+EGR Y
Sbjct: 224 XXXXXXXXXXXXXXXXXXXXXXXXXXXRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPY 283

Query: 241 RNRPAPYDRPSRAAGRPSSFDRY 248
           R+RP PYDRPSR  GRPSS++R+
Sbjct: 284 RSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Carg20711 vs. Swiss-Prot
Match: sp|Q8RWN5|RZ1C_ARATH (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.0e-28
Identity = 81/143 (56.64%), Postives = 95/143 (66.43%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGED--MDHGYR 60
           MLE++TGR RGFGFITF+DRR MD++IREMHG++FG+R+ISVN+AEPK+G D    HG R
Sbjct: 39  MLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSR 98

Query: 61  G--XXXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRP 120
           G              XXXXXXXXX  +DECFKCGR GHWARDCP  GG GRGG      P
Sbjct: 99  GGRDSGYSIAGKGSFXXXXXXXXXVGEDECFKCGRVGHWARDCPSAGG-GRGG------P 158

Query: 121 RLGDSDYGDRFAGDNNRYVDDRY 140
             G S     + G + R   DRY
Sbjct: 159 VGGFSSRASAYGGSDGRV--DRY 172

[Close]
BLAST of Carg20711 vs. Swiss-Prot
Match: sp|Q9LIN3|RZ1A_ARATH (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-13
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           +L+K +GR RGFGFITF +++ MD+AI  M+G +   R I+V+KA+P  G       R X
Sbjct: 39  VLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQG----GAGRDX 98

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCPVGGGRGRGG 110
           XXXXXXXXXXXXXXXXX       +CFKCG+PGH+AR+CP    R  GG
Sbjct: 99  XXXXXXXXXXXXXXXXXSGGRGGGDCFKCGKPGHFARECPSESSRDGGG 143

[Close]
BLAST of Carg20711 vs. Swiss-Prot
Match: sp|Q05966|GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 3  EKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMG 51
          ++ TGR RGFGF+TF D + M DAI EM+G+E   R I+VN+A+ + G
Sbjct: 40 DRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGG 87

[Close]
BLAST of Carg20711 vs. Swiss-Prot
Match: sp|Q03251|RBG8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.4e-07
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 3  EKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPK 49
          ++ +GR RGFGF+TF D + M DAI EM+G+E   R+I+VN+A+ +
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85

[Close]
BLAST of Carg20711 vs. TrEMBL
Match: tr|A0A1S3BFI2|A0A1S3BFI2_CUCME (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489439 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 176/249 (70.68%), Postives = 178/249 (71.49%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG 
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLG 120
                        XX     ARQDECFKCGR GHWARDCP VGGGRGRGGDSFL+R RLG
Sbjct: 61  -GGYSTGGRGSYGXXGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLG 120

Query: 121 DSDYGDRFAGDNNRYVD-DRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXX 180
           D D GDRFAGD NRYVD                           XX X     XXXXXXX
Sbjct: 121 DGDRGDRFAGDTNRYVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAA 240
           XXXXXXXXXXXXXXXXXXXXX    G     KY S GPAR+EGRSYRNRPAPYDRPSR  
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXKYGSGGPARDEGRSYRNRPAPYDRPSR-G 240

Query: 241 GRPSSFDRY 248
           GRPSSFDRY
Sbjct: 241 GRPSSFDRY 246

[Close]
BLAST of Carg20711 vs. TrEMBL
Match: tr|A0A1S3BGN5|A0A1S3BGN5_CUCME (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489439 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 176/249 (70.68%), Postives = 178/249 (71.49%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG 
Sbjct: 39  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRG- 98

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLG 120
                        XX     ARQDECFKCGR GHWARDCP VGGGRGRGGDSFL+R RLG
Sbjct: 99  -GGYSTGGRGSYGXXGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLG 158

Query: 121 DSDYGDRFAGDNNRYVD-DRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXX 180
           D D GDRFAGD NRYVD                           XX X     XXXXXXX
Sbjct: 159 DGDRGDRFAGDTNRYVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 218

Query: 181 XXXXXXXXXXXXXXXXXXXXXYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAA 240
           XXXXXXXXXXXXXXXXXXXXX    G     KY S GPAR+EGRSYRNRPAPYDRPSR  
Sbjct: 219 XXXXXXXXXXXXXXXXXXXXXXXXDGXXXXXKYGSGGPARDEGRSYRNRPAPYDRPSR-G 278

Query: 241 GRPSSFDRY 248
           GRPSSFDRY
Sbjct: 279 GRPSSFDRY 284

[Close]
BLAST of Carg20711 vs. TrEMBL
Match: tr|A0A2N9I9S0|A0A2N9I9S0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48493 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.9e-60
Identity = 159/250 (63.60%), Postives = 176/250 (70.40%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           MLE+ TGRPRGFGFITF+DRRGM+DAIREMHG+E G+R+ISVNKA+PKMGED DHG+RG 
Sbjct: 1   MLERETGRPRGFGFITFADRRGMEDAIREMHGRELGDRVISVNKAQPKMGEDSDHGFRG- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLG 120
                               A QD+CFKCGR GHWARDCP  GG RG GG SF SR RLG
Sbjct: 61  ---GGYSSVGRGSYGGGDRSAGQDDCFKCGRSGHWARDCPSAGGDRGGGGGSFSSRSRLG 120

Query: 121 D-SDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXX 180
             S  GDRF G+  RY+DDRY+ GGR GD++RFD SR+      XX X     XXXXXXX
Sbjct: 121 GASGRGDRFGGERERYMDDRYD-GGRYGDKNRFD-SREXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXYRDGGPR-GVDKYESSGPARNEGRSYRNRPAPYDRPSRA 240
           XXXXXXXXXXX           RDGGPR G D+Y S GPARNEGRSYRN+P PYDRP R 
Sbjct: 181 XXXXXXXXXXXQNGYGKDRSYDRDGGPRGGGDRYGSGGPARNEGRSYRNKPGPYDRPDR- 240

Query: 241 AGRPSSFDRY 248
           AGRPSSFD Y
Sbjct: 241 AGRPSSFDHY 243

[Close]
BLAST of Carg20711 vs. TrEMBL
Match: tr|F6HNC0|F6HNC0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g05080 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.3e-58
Identity = 154/249 (61.85%), Postives = 173/249 (69.48%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           MLE++TGRPRGFGFIT++DRRGM+DAIREMHG++FG+RIISVNKA+PKMGED DHGY G 
Sbjct: 39  MLERDTGRPRGFGFITYADRRGMEDAIREMHGRDFGDRIISVNKAQPKMGEDPDHGYNG- 98

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLG 120
                               A QD+CFKCGRPGHWARDCP  GGGRGRGG  F SR R  
Sbjct: 99  ----GYSSGGRGSYGGGDRSAGQDDCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRF- 158

Query: 121 DSDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXX 180
               GDRF G+ +RY++DRY+ GGR GDRDRF+S  +KY    XX X     XXXXXXXX
Sbjct: 159 SGGRGDRFGGERDRYMEDRYD-GGRYGDRDRFESRDNKYXXXXXXXXXXXXXXXXXXXXX 218

Query: 181 XXXXXXXXXXXXXXXXXXXXYRDGGPR-GVDKYESSGPARNEGRSYRNRPAPYDRPSRAA 240
           XXXXXXXXX            RD  PR G D+Y     ARNEGRSYRNRP PYDRP+R  
Sbjct: 219 XXXXXXXXXQNGYGKDRGYD-RDAAPRGGGDRYXXXXXARNEGRSYRNRPGPYDRPNR-G 278

Query: 241 GRPSSFDRY 248
           GRPSSFDRY
Sbjct: 279 GRPSSFDRY 278

[Close]
BLAST of Carg20711 vs. TrEMBL
Match: tr|A5ANB8|A5ANB8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011831 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.3e-58
Identity = 154/249 (61.85%), Postives = 173/249 (69.48%), Query Frame = 0 

Query: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGX 60
           MLE++TGRPRGFGFIT++DRRGM+DAIREMHG++FG+RIISVNKA+PKMGED DHGY G 
Sbjct: 1   MLERDTGRPRGFGFITYADRRGMEDAIREMHGRDFGDRIISVNKAQPKMGEDPDHGYNG- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLG 120
                               A QD+CFKCGRPGHWARDCP  GGGRGRGG  F SR R  
Sbjct: 61  ----GYSSGGRGSYGGGDRSAGQDDCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRF- 120

Query: 121 DSDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDXXVXDRYPPXXXXXXXX 180
               GDRF G+ +RY++DRY+ GGR GDRDRF+S  +KY    XX X     XXXXXXXX
Sbjct: 121 SGGRGDRFGGERDRYMEDRYD-GGRYGDRDRFESRDNKYXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXYRDGGPR-GVDKYESSGPARNEGRSYRNRPAPYDRPSRAA 240
           XXXXXXXXX            RD  PR G D+Y     ARNEGRSYRNRP PYDRP+R  
Sbjct: 181 XXXXXXXXXQNGYGKDRGYD-RDAAPRGGGDRYXXXXXARNEGRSYRNRPGPYDRPNR-G 240

Query: 241 GRPSSFDRY 248
           GRPSSFDRY
Sbjct: 241 GRPSSFDRY 240

The following BLAST results are available for this feature:
BLAST of Carg20711 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945121.18.9e-105100.00glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata][more]
XP_022945122.18.9e-105100.00glycine-rich RNA-binding protein RZ1C-like isoform X2 [Cucurbita moschata][more]
XP_023541916.11.7e-10398.79glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_023541919.11.7e-10398.79glycine-rich RNA-binding protein RZ1C-like isoform X3 [Cucurbita pepo subsp. pep... [more]
XP_022966702.14.9e-10397.17glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita maxima][more]
BLAST of Carg20711 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G60650.15.2e-3047.15RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT5G04280.13.3e-2956.64RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT3G26420.11.8e-1454.13RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT4G39260.11.9e-0850.00cold, circadian rhythm, and RNA binding 1[more]
AT2G21660.19.5e-0850.00cold, circadian rhythm, and rna binding 2[more]
BLAST of Carg20711 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22703|RZ1B_ARATH9.3e-2947.15Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE... [more]
sp|Q8RWN5|RZ1C_ARATH6.0e-2856.64Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE... [more]
sp|Q9LIN3|RZ1A_ARATH3.2e-1354.13Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE... [more]
sp|Q05966|GRP10_BRANA2.0e-0752.08Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1[more]
sp|Q03251|RBG8_ARATH3.4e-0750.00Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 ... [more]
BLAST of Carg20711 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BFI2|A0A1S3BFI2_CUCME1.2e-6070.68glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S3BGN5|A0A1S3BGN5_CUCME1.2e-6070.68glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2N9I9S0|A0A2N9I9S0_FAGSY9.9e-6063.60Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48493 PE=4 SV=1[more]
tr|F6HNC0|F6HNC0_VITVI9.3e-5861.85Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g05080 PE=4 SV=... [more]
tr|A5ANB8|A5ANB8_VITVI9.3e-5861.85Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011831 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR001878Znf_CCHC
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20711-RACarg20711-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 85..101
e-value: 7.8E-6
score: 35.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 85..100
e-value: 1.0E-8
score: 34.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 86..100
score: 11.383
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 1..63
e-value: 1.3E-12
score: 49.8
NoneNo IPR availableGENE3DG3DSA:4.10.60.10coord: 64..112
e-value: 4.1E-9
score: 38.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..247
NoneNo IPR availablePANTHERPTHR44993FAMILY NOT NAMEDcoord: 1..247
NoneNo IPR availablePANTHERPTHR44993:SF1GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-RELATEDcoord: 1..247
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 4..40
e-value: 2.6E-8
score: 33.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..47
score: 10.94
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 2..77
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILYSSF57756Retrovirus zinc finger-like domainscoord: 68..102

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20711Cla020538Watermelon (97103) v1carwmB0480
Carg20711Cla013740Watermelon (97103) v1carwmB0479
Carg20711Csa5G622570Cucumber (Chinese Long) v2carcuB0515
Carg20711MELO3C012401Melon (DHL92) v3.5.1carmeB0489
Carg20711MELO3C019833Melon (DHL92) v3.5.1carmeB0490
Carg20711ClCG05G021270Watermelon (Charleston Gray)carwcgB0467
Carg20711CSPI05G26870Wild cucumber (PI 183967)carcpiB0522
Carg20711Cucsa.308610Cucumber (Gy14) v1carcgyB0556
Carg20711CmaCh04G013880Cucurbita maxima (Rimu)carcmaB0673
Carg20711CmaCh04G025520Cucurbita maxima (Rimu)carcmaB0674
Carg20711CmoCh04G014620Cucurbita moschata (Rifu)carcmoB0655
Carg20711Lsi04G000930Bottle gourd (USVL1VR-Ls)carlsiB437
Carg20711Lsi08G006920Bottle gourd (USVL1VR-Ls)carlsiB438
Carg20711Cp4.1LG01g24600Cucurbita pepo (Zucchini)carcpeB0679
Carg20711Cp4.1LG01g14720Cucurbita pepo (Zucchini)carcpeB0678
Carg20711CsGy5G026320Cucumber (Gy14) v2carcgybB0492
Carg20711MELO3C012401.2Melon (DHL92) v3.6.1carmedB0495
Carg20711CsaV3_5G036020Cucumber (Chinese Long) v3carcucB0521
Carg20711Cla97C05G102950Watermelon (97103) v2carwmbB0507
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg20711Carg01935Silver-seed gourdcarcarB472
The following block(s) are covering this gene:
GeneOrganismBlock
Carg20711Cucurbita maxima (Rimu)carcmaB0672
Carg20711Cucurbita moschata (Rifu)carcmoB0654
Carg20711Cucurbita pepo (Zucchini)carcpeB0677
Carg20711Melon (DHL92) v3.6.1carmedB0496
Carg20711Watermelon (Charleston Gray)carwcgB0468
Carg20711Wax gourdcarwgoB0587
Carg20711Wax gourdcarwgoB0588