Csa2G324460 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G324460
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGlycine-rich RNA-binding protein, putative; contains IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding, alpha-beta plait)
LocationChr2 : 14923811 .. 14927446 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGAAAGACGAGTATCGAATATTTGTTGGAGGCCTCTCATGGAACATTTCAGAGCGTCAGCTCGAAAACGCTTTCATTCGCTTCGGCAAAATGCTCGAAACTCAAGTAAACTTTCGTTTTTTTCCTTTCTTTCTTTTTTCGTCATATTACGCTTCGTATTTGTTCATCAATCTGTAGAATATTATGAATTTTTTTTGGCATGCATGCGGTAGAAGATGAGGAGTCTAATGTATTTTCTTAGCAAAGACTATCAAAGATGTGAACCCCTTGATTTTTAATTTTTCTTTAATGAAGATGCCTGCTATTATTTGACGGCATTCCTTGCCGTTTATGGGTTTTCCTTCTCTACAATGCATGCCAATTGAATTTTATTAGTTGTGTGAATTTTGTTTATAATCTTATGTTACTTATTTGTTATAAATAAAATTTTTTGCACATGGACGTTGGATGAAATTTCAGGATTTATTGATTTATTTAAGCTATATGAATCTGAATTTTTCAGATCAGTTGTACTTACAAGATTATAGCAAATAGTTTTTTTTCAGGCTCTCTTTCTTACCATCCTTTGATCTTTTGTTATGTAGAATATGGTTCAGGGAGTCAGCTTAAAGCTGAATACATGGATCTGTTCGTACATTTTCTGCTGAATTCTTTCATAAAATTGAAGAAATGGTGTTAGTAGACAAGAAATCTATCCATCAGTATGCTTACATTGGAAGAAATTGGTTGGAAACTGATGGTTTTTTATGTGAAAAACGTCGTCACAATAGTGTTTCAGAAATTTTACTTGGTTCCCTCTCTTAGGACATCTGGTGAAGTGTTTCGTCTCGGGATGAGAATCTAAACTTGGCACAATTTTTGAAATTAGATCAAGACTCTTTTCTCCCAAAACTAAACTTTTTGTGTCCAACATACGGTTTGTTGATGTAGTTTCCTACTTGTCAAAGTATATGAGAAAGTAACACTTGTATTTCATGGAAATGTATCAGAGTGGCGTTCTCTTGGTCATCTTGCTGCCATTTATTGTTAGTACACCGCACTTCACTGACAATTCAGAGATTAGATTTGGGCATAAGTTGTATTGAACAGATGCTTCTAGAACTCTTAAGGTTCAGATTTTTTTAAAAAAAGAATTATTTACACCGGGCCTCCTTGTTAAGAGATTTTGCAAAGTTGTCCTTAATAGCATTCAAGATATATTAAACTTGATTTTTATTGCCTAATGCAGCGGAGTTTGGTTATTTTCTTGCTCTGTCAGTGTAAATAGTGAATAAATGCATTCAAGGGGAGTACATTATCACCTGCCTCGCTGTTGGCATACCGTCTAAGGTTCTTGCTTGGCAACTCTGTGGATTGAGAACTTCTTATAACCAAATTAGAATTTACGGTTCTAGACGTCAGGATTTATTTTAGTTGCTTGGCTATGGAAGGAAGCTATTGCTGAAACATTTTAGAGTTAGTTCACTTGAGAAAATGTGAGACATTGTATTGAAATTACCTTAGTTGTCAGCACCAGCTTGTTCTGTTTTAGATGACCAGACTTCGCTGTAAATTGAATTAAATTGTGGAGATGACACCAGAATGCAGAAGAATCTGAATTTTGATTTTGCTATGTTAGTTGTTCAGTGAAAAGGAGGAACTCAGTTTATATGAATAAGCTAAGAAGTGCATTTCAGGTGAGGAATATTTTTAATGCATTGTTGTACTTACTGCGGTATTGAATTGGGTGGTGGCGTGATGTTGAGAAACACTAGCAAAAAATTATCTCTCCAAGAATTTTTTCTTCTCGATTTTCTCATGTTCTGGGTTCTGGACTCTAGAATGAGTGAATTGTTTGCCTGGGCTATTATTTTATTTTACCTTTTGGATAAGAAACAACTTTTTTCTGACTGGGTTACGAAAAATGCAATATTGTCTGAATGCTACAATAAATTAAGGCTGTGCATTGGTGGTGGAGTAATTTCAGCAGATCAGTAGGAATGTTGTCTTGGGTAATCATCTTCATGGACGGCTTTCTTTTTAGCTTGAAGAGCTTAAGATCCTGACTTTTCCATGGAAAATTTCCTAGTTTGGACCCAAAGAGGTTGTGGGTATTGAGGTTAAAGTTGCTCTTTAATTGTAGATTTTAAGTCTTGGGTTCAGGTTGTTGGACACACTGCAGAGCTTTGAAGGGAAAACGGAATCCTTCCAAGTATATCATTTAGTCTCTCTTTAAGTGATTTGCTTGGAAGGAAAAGTAAGTTGTCAAGAATTTTAATTGTTTTCCACAAATTATATTCCCTGCATTAACTATAAAACATTTTCAGTCAGTCTGTTGGACGTGTACTGTGAACTAATTTAATACTGATTCATCTATAATAATGGAAACTTGTTGGATGAGCTTCTCTTTTGATGTTTATGTGTAGATCATGTTAGAACGAGATACAGGTCGTCCTCGTGGGTTTGGTTTTATTACCTTTGCAGACCGTAGAGGGATGGATGATGCAATAAGAGAGATGCATGGTCAGGAGCTTGGTGAGCGGATTATCTCAGTAAATAAGGCTGAACCCAAGATGGAGGGTGATGATACTGAGCAAGGCTTCAGGGGAGGAGGTTATTCATCTGGTGGTAGGGCTAGTTTTGGGAGAGGAAAAGATAGATCTGTGGGGCAGGATGAATGCTTCAAGTGTGGACGCCCAGGGCATTGGGCACGAGACTGTCCCTCAGTCGGTGGTGGACGTGGTGGAGGTAGAGGTTCATTTTCTTCACGTTCTCGATTTGATAGTGATGGTCGTGGGGATCGTTTTGGAGGAGATCGTGACCGATATGTGGATGAGCGTTATAATGGAGGGCGATATGGTGATAGAGATCGTTTTGATCGTAGAGACGACAAGTATGGAAGTCGAGACCGCTACTTCGACGACAGGTTGCTTTACATCCTTTCTTTGTTTTAATAACAATTACAATAGTGATCTACATGTGTTAACACCCATTCCAACTTTTTGTACTCGTACATTTACTTCAAAATATGATTTGATTGACATGTTATTGAAATTTTGGCAATTGTATGCAAACTCTGCAGGTACCCATCTGCTGGAGATCGCTTTACTGGTAGTGATAGGTATGATGTCAGCGATCGTTATCCTCAAAATGGCTACGTCAAAGACCGCGTCTACGATAGGGATATTGGTCCGAGGAGTGGCAGTGATAGGTATGGTAGCGGAGGTCCTGGCCGTCATGAGGGCAGAAGTTATAGAGATAGGACAGGCCCTTACGATCGCCCAAGCAGGGTGGGACGACCATCTTCCTACGACCGCTATTAAAATTCAAATGTACGTATATCAGTAGTTGTTGATTAACATTTGCAAATCATTCTATAGCTAGGATATGCACTTGCAATGAATTGGCAGTCTTTATGCAAGCTTTGACCTTCCTTTTGTGGCTTCCAAATCTTCATTGCCTTTGAAAATATTTAGTAATAGAAATTTTGGATGTTACAACTTACAATATCTAATGTTTGTAGGGAGGTTGTACCCTACCTCCAGCCTCAGATATTTTAGTTCTCAATGTGGTGAATTTCTTGGCTGCCCTTGTTGACTTTGTTTTGTTCTTTTCTTAGGAACAACAGACAATTGACCCAACTTTCATTTT

mRNA sequence

ATGGCTTCGAAAGACGAGTATCGAATATTTGTTGGAGGCCTCTCATGGAACATTTCAGAGCGTCAGCTCGAAAACGCTTTCATTCGCTTCGGCAAAATGCTCGAAACTCAAATCATGTTAGAACGAGATACAGGTCGTCCTCGTGGGTTTGGTTTTATTACCTTTGCAGACCGTAGAGGGATGGATGATGCAATAAGAGAGATGCATGGTCAGGAGCTTGGTGAGCGGATTATCTCAGTAAATAAGGCTGAACCCAAGATGGAGGGTGATGATACTGAGCAAGGCTTCAGGGGAGGAGGTTATTCATCTGGTGGTAGGGCTAGTTTTGGGAGAGGAAAAGATAGATCTGTGGGGCAGGATGAATGCTTCAAGTGTGGACGCCCAGGGCATTGGGCACGAGACTGTCCCTCAGTCGGTGGTGGACGTGGTGGAGGTAGAGGTTCATTTTCTTCACGTTCTCGATTTGATAGTGATGGTCGTGGGGATCGTTTTGGAGGAGATCGTGACCGATATGTGGATGAGCGTTATAATGGAGGGCGATATGGTGATAGAGATCGTTTTGATCGTAGAGACGACAAGTATGGAAGTCGAGACCGCTACTTCGACGACAGGTACCCATCTGCTGGAGATCGCTTTACTGGTAGTGATAGGTATGATGTCAGCGATCGTTATCCTCAAAATGGCTACGTCAAAGACCGCGTCTACGATAGGGATATTGGTCCGAGGAGTGGCAGTGATAGGTATGGTAGCGGAGGTCCTGGCCGTCATGAGGGCAGAAGTTATAGAGATAGGACAGGCCCTTACGATCGCCCAAGCAGGGTGGGACGACCATCTTCCTACGACCGCTATTAA

Coding sequence (CDS)

ATGGCTTCGAAAGACGAGTATCGAATATTTGTTGGAGGCCTCTCATGGAACATTTCAGAGCGTCAGCTCGAAAACGCTTTCATTCGCTTCGGCAAAATGCTCGAAACTCAAATCATGTTAGAACGAGATACAGGTCGTCCTCGTGGGTTTGGTTTTATTACCTTTGCAGACCGTAGAGGGATGGATGATGCAATAAGAGAGATGCATGGTCAGGAGCTTGGTGAGCGGATTATCTCAGTAAATAAGGCTGAACCCAAGATGGAGGGTGATGATACTGAGCAAGGCTTCAGGGGAGGAGGTTATTCATCTGGTGGTAGGGCTAGTTTTGGGAGAGGAAAAGATAGATCTGTGGGGCAGGATGAATGCTTCAAGTGTGGACGCCCAGGGCATTGGGCACGAGACTGTCCCTCAGTCGGTGGTGGACGTGGTGGAGGTAGAGGTTCATTTTCTTCACGTTCTCGATTTGATAGTGATGGTCGTGGGGATCGTTTTGGAGGAGATCGTGACCGATATGTGGATGAGCGTTATAATGGAGGGCGATATGGTGATAGAGATCGTTTTGATCGTAGAGACGACAAGTATGGAAGTCGAGACCGCTACTTCGACGACAGGTACCCATCTGCTGGAGATCGCTTTACTGGTAGTGATAGGTATGATGTCAGCGATCGTTATCCTCAAAATGGCTACGTCAAAGACCGCGTCTACGATAGGGATATTGGTCCGAGGAGTGGCAGTGATAGGTATGGTAGCGGAGGTCCTGGCCGTCATGAGGGCAGAAGTTATAGAGATAGGACAGGCCCTTACGATCGCCCAAGCAGGGTGGGACGACCATCTTCCTACGACCGCTATTAA

Protein sequence

MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRGMDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIGPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY*
Homology
[Close]
BLAST of Csa2G324460 vs. Swiss-Prot
Match: RZ1C_ARATH (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.5e-88
Identity = 182/311 (58.52%), Postives = 213/311 (68.49%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA+K+  RIFVGGLS  +++R LE AF RFG +L+ QIMLERDTGR RGFGFITFADRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTE-QGFRGG---GYSSGGRASFGRGKDRS 120
           MD++IREMHG++ G+R+ISVN+AEPK+  DD E  G RGG   GYS  G+ SFG G    
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 --VGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRF--DSDGRGDRFGG-----D 180
             VG+DECFKCGR GHWARDCPS GGGRGG  G FSSR+     SDGR DR+       D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RDRYVDERYNG-GRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYD-VSDRYP 240
           R+RY+D+RY+G  RYG RDRFD R + Y  RDRY  DRY +  DRF G DRY   SDRYP
Sbjct: 181 RERYIDDRYDGAARYGARDRFDSR-EAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRYP 240

Query: 241 QNGYVKDRVYDRDIGPRSGSDRYG---SGGP---GRHEGRSYRDRTG-PYDRPSRVG--- 284
              Y K R ++RDI P +GSDRYG   +GGP   G  EGR +R R G PY+RPSR G   
Sbjct: 241 PGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGGG 300

[Close]
BLAST of Csa2G324460 vs. Swiss-Prot
Match: RZ1B_ARATH (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.4e-81
Identity = 166/294 (56.46%), Postives = 196/294 (66.67%), Query Frame = 1 

Query: 6   EYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRGMDDAI 65
           E RIFVGGLSW+++ERQLE+ F R+GK+ E QIM+ RDTGRPRGFGFITF DRRG DDAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  REMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQDECFKC 125
           + MHG+ELG ++ISVNKAEPK+ G+D +Q  +GGGYSS G+ +          +DECFKC
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDECFKC 130

Query: 126 GRPGHWARDCPSVGGGRGGGRGSFSSRSRF-DSDGRGDRFGG-----------DRDRYVD 185
            RPGHWARDCPS G  R   R   + RSR  D DG  DR+G            + DRY+D
Sbjct: 131 RRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYMD 190

Query: 186 ER--YNGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGY-V 245
            R   +GGRY  RDRFD   DKY  RD Y  +RY   GDRF  SDRY + + + +N Y  
Sbjct: 191 GRRDRDGGRYSYRDRFD-SGDKYEPRDHYPFERYAPPGDRFV-SDRYGMPEHHLENEYRG 250

Query: 246 KDRVYDRDIGPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRV-GRPSSYDRY 284
           ++R YDRD   R  SDRYG  GP R EGR YR R GPYDRPSR  GRPSSY+R+
Sbjct: 251 RERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Csa2G324460 vs. Swiss-Prot
Match: RZ1A_ARATH (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-40
Identity = 110/281 (39.15%), Postives = 149/281 (53.02%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           M+   EYR F+GGL+W  S+R L +AF ++G ++E +++L++ +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEG----DDTEQGFRGGGYSSGGRASFGRGKDRS 120
           MD+AI  M+G +L  R I+V+KA+P   G    +D ++G   G      R S GR     
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGR----- 120

Query: 121 VGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERY 180
            G  +CFKCG+PGH+AR+CPS     GGGR S S   R+ S  + DR+G   DRY  +  
Sbjct: 121 -GGGDCFKCGKPGHFARECPSESSRDGGGRFS-SKDDRYSS--KDDRYGAKDDRYGAKE- 180

Query: 181 NGGRYGDR-DRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVY 240
              RYG + DR+  +DD+Y S+    DDRY   G R  G  RY             DR  
Sbjct: 181 --DRYGAKDDRYSSKDDRYSSK----DDRY---GSRDGGGSRYG-----------PDRSG 240

Query: 241 DRDIG-PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVG 276
           +R  G  R G  R   GG         R    PYDRP   G
Sbjct: 241 ERAGGRSRDGGSRGAPGGE--------RHSRAPYDRPRAGG 243

[Close]
BLAST of Csa2G324460 vs. Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.6e-27
Identity = 75/171 (43.86%), Postives = 97/171 (56.73%), Query Frame = 1 

Query: 1   MASKD-EYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRR 60
           MAS D EYR FVGGL+W   +R LE AF ++G++L+++I+ +R+TGR RGFGF+TF D +
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  GMDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQ 120
            M DAI  M+GQ+L  R I+VN+A+ +  G        GGGY SGG   +G G     G 
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGGGGYGGG 120

Query: 121 DECFKCGRPGHWARDCPSVGGG----RGGGRGSFSSRSRFDSDGRGDRFGG 167
                 GR G +     S GGG    RGGG G +    R D  G G  +GG
Sbjct: 121 ------GREGGY-----SGGGGGYSSRGGGGGGYGGGGRRDG-GEGGGYGG 159

[Close]
BLAST of Csa2G324460 vs. Swiss-Prot
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-26
Identity = 77/184 (41.85%), Postives = 100/184 (54.35%), Query Frame = 1 

Query: 1   MASKD-EYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRR 60
           MAS D EYR FVGGL+W   +R LE AF ++G +++++I+ +R+TGR RGFGF+TF D +
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  GMDDAIREMHGQELGERIISVNKAEPK-MEGDDTEQGFRGGGYSSGGRASFGRGKDRSVG 120
            M DAI  M+GQ+L  R I+VN+A+ +   G    +G  GGGY SGG   +  G     G
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 QDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNG 180
                     G   R+    GGG  GG G +SSR      G G  +GG R      R  G
Sbjct: 121 ----------GGGRRE---GGGGYSGGGGGYSSRG-----GGGGSYGGGR------REGG 160

Query: 181 GRYG 183
           G YG
Sbjct: 181 GGYG 160

[Close]
BLAST of Csa2G324460 vs. TrEMBL
Match: A0A0A0LQB5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G324460 PE=4 SV=1)

HSP 1 Score: 602.1 bits (1551), Expect = 3.6e-169
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD
Sbjct: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180
           ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR
Sbjct: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180

Query: 181 YGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIG 240
           YGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIG
Sbjct: 181 YGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIG 240

Query: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY
Sbjct: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 283

[Close]
BLAST of Csa2G324460 vs. TrEMBL
Match: F6HNC0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05080 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.4e-120
Identity = 209/283 (73.85%), Postives = 242/283 (85.51%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+E RIFVGGLSW+++ERQLEN F RFGK++E+QIMLERDTGRPRGFGFIT+ADRRG
Sbjct: 1   MAGKEENRIFVGGLSWDVTERQLENTFSRFGKIIESQIMLERDTGRPRGFGFITYADRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           M+DAIREMHG++ G+RIISVNKA+PKM G+D + G+  GGYSSGGR S+G G DRS GQD
Sbjct: 61  MEDAIREMHGRDFGDRIISVNKAQPKM-GEDPDHGY-NGGYSSGGRGSYG-GGDRSAGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180
           +CFKCGRPGHWARDCPS GGGRG G   F SRSRF S GRGDRFGG+RDRY+++RY+GGR
Sbjct: 121 DCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRF-SGGRGDRFGGERDRYMEDRYDGGR 180

Query: 181 YGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIG 240
           YGDRDRF+ RD+KYG+RDRY +DRY  +GDRF+G DRY  SDRYPQNGY KDR YDRD  
Sbjct: 181 YGDRDRFESRDNKYGTRDRYVNDRYAPSGDRFSG-DRYGGSDRYPQNGYGKDRGYDRDAA 240

Query: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           PR G DRY  GG  R+EGRSYR+R GPYDRP+R GRPSS+DRY
Sbjct: 241 PRGGGDRYAGGGSARNEGRSYRNRPGPYDRPNRGGRPSSFDRY 278

[Close]
BLAST of Csa2G324460 vs. TrEMBL
Match: M5XLS7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009799mg PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 1.8e-120
Identity = 216/285 (75.79%), Postives = 242/285 (84.91%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+++RIFVGGLSW+++ERQLE+AF RFGK+ E QIM+ERDT RPRGFGFITF DRR 
Sbjct: 1   MAGKEDFRIFVGGLSWDVTERQLESAFQRFGKVHEAQIMMERDTNRPRGFGFITFGDRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKM--EGDDTEQGFRGGGYSSGGRASFGRGKDRSVG 120
           M+DAIREMHG+ELG+RIISVNKA+PKM   G+D + G+R GGYS+GGR ++G G DR VG
Sbjct: 61  MEDAIREMHGRELGDRIISVNKAQPKMGGGGEDLDHGYR-GGYSTGGRRNYG-GGDRPVG 120

Query: 121 QDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNG 180
           QDECFKCGRPGHWARDCPS GGGRGG  GSFSS SRF + GRGDRFGGDRDRYVD+RY+G
Sbjct: 121 QDECFKCGRPGHWARDCPSAGGGRGG--GSFSSHSRFGAGGRGDRFGGDRDRYVDDRYDG 180

Query: 181 GRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRD 240
           GRYG+RDRFD R+DKYGSRDRY  DRYP AGDRF  SDRY  SDRYPQNGY KDR YDRD
Sbjct: 181 GRYGERDRFDSREDKYGSRDRYVSDRYP-AGDRF-ASDRYGGSDRYPQNGYGKDRGYDRD 240

Query: 241 IGPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
              R GSDRYGSGGP R EG +YR R GPYDRPSR GRPSS+DRY
Sbjct: 241 --ARGGSDRYGSGGPARDEGGNYRSRAGPYDRPSRGGRPSSFDRY 277

[Close]
BLAST of Csa2G324460 vs. TrEMBL
Match: B9HUL0_POPTR (Glycine-rich RNA-binding family protein OS=Populus trichocarpa GN=POPTR_0010s23550g PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 5.9e-119
Identity = 207/284 (72.89%), Postives = 239/284 (84.15%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+E RIFVGGLSW+I+ERQLENAF RFGK++E+Q+MLERDTGRPRGFGFITFADRR 
Sbjct: 1   MAGKEENRIFVGGLSWDITERQLENAFDRFGKIVESQVMLERDTGRPRGFGFITFADRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MDDAIREMHG++ G+R+ISVNKA+PK+ GDD++ G+R GGYS+G R  +G G DR  GQD
Sbjct: 61  MDDAIREMHGRDFGDRVISVNKAQPKIGGDDSDHGYR-GGYSTGSRGGYG-GGDRPAGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDG-RGDRFGGDRDRYVDERYNGG 180
           ECFKCGR GHWARDCPS  GGRGGG G  SSRSRF   G RGDRFGGDRDRY+D+RY+GG
Sbjct: 121 ECFKCGRSGHWARDCPS-AGGRGGGGGLISSRSRFGGAGDRGDRFGGDRDRYIDDRYDGG 180

Query: 181 RYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDI 240
           RYGD+DRFD RD+KYG RDRY  DRYP  GDRF+G DRY  SDRY QNGY KD+ YDRD+
Sbjct: 181 RYGDKDRFDSRDNKYGGRDRYASDRYPPNGDRFSG-DRYGGSDRYAQNGYGKDKGYDRDV 240

Query: 241 GPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           GPR G+DRYGSGGP R++  SYR+R  PYDRPSR G PSS++RY
Sbjct: 241 GPRGGNDRYGSGGPQRNDRSSYRNRPAPYDRPSRGGHPSSFERY 280

[Close]
BLAST of Csa2G324460 vs. TrEMBL
Match: A0A067EAL8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023559mg PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 1.0e-118
Identity = 207/284 (72.89%), Postives = 234/284 (82.39%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDE RIFVGGLSWN++ERQLENAF RFGK++E QIMLERD+GRPRGFGFIT+ADRR 
Sbjct: 1   MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MDDAIREMHG+E G+R+ISVNKA+PKM G+ ++ G+RGGGYSSGGR S+  G DR  GQD
Sbjct: 61  MDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHGYRGGGYSSGGRGSY--GADRPGGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDG-RGDRFGGDRDRYVDERYNGG 180
           +CFKCGRPGHWARDCPS  GGRGG  GSFSSRSRF   G RGD  GG RDRY+D+RY+GG
Sbjct: 121 DCFKCGRPGHWARDCPSAVGGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDDRYDGG 180

Query: 181 RYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDI 240
           RYGDRDR+D +D KYGSRDRY  DRYP AGDR  G DRY  SDRYP NGY K+R Y+RD+
Sbjct: 181 RYGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAG-DRYGGSDRYPVNGYGKERGYERDV 240

Query: 241 GPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           G R+GSDRY SGGP R +GR YR R  PYDRPSR  RP S+DRY
Sbjct: 241 GARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRP-SFDRY 280

[Close]
BLAST of Csa2G324460 vs. TAIR10
Match: AT5G04280.1 (AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 327.4 bits (838), Expect = 8.7e-90
Identity = 182/311 (58.52%), Postives = 213/311 (68.49%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA+K+  RIFVGGLS  +++R LE AF RFG +L+ QIMLERDTGR RGFGFITFADRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTE-QGFRGG---GYSSGGRASFGRGKDRS 120
           MD++IREMHG++ G+R+ISVN+AEPK+  DD E  G RGG   GYS  G+ SFG G    
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 --VGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRF--DSDGRGDRFGG-----D 180
             VG+DECFKCGR GHWARDCPS GGGRGG  G FSSR+     SDGR DR+       D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RDRYVDERYNG-GRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYD-VSDRYP 240
           R+RY+D+RY+G  RYG RDRFD R + Y  RDRY  DRY +  DRF G DRY   SDRYP
Sbjct: 181 RERYIDDRYDGAARYGARDRFDSR-EAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRYP 240

Query: 241 QNGYVKDRVYDRDIGPRSGSDRYG---SGGP---GRHEGRSYRDRTG-PYDRPSRVG--- 284
              Y K R ++RDI P +GSDRYG   +GGP   G  EGR +R R G PY+RPSR G   
Sbjct: 241 PGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGGG 300

[Close]
BLAST of Csa2G324460 vs. TAIR10
Match: AT1G60650.1 (AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 303.5 bits (776), Expect = 1.3e-82
Identity = 166/294 (56.46%), Postives = 196/294 (66.67%), Query Frame = 1 

Query: 6   EYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRGMDDAI 65
           E RIFVGGLSW+++ERQLE+ F R+GK+ E QIM+ RDTGRPRGFGFITF DRRG DDAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  REMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQDECFKC 125
           + MHG+ELG ++ISVNKAEPK+ G+D +Q  +GGGYSS G+ +          +DECFKC
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDECFKC 130

Query: 126 GRPGHWARDCPSVGGGRGGGRGSFSSRSRF-DSDGRGDRFGG-----------DRDRYVD 185
            RPGHWARDCPS G  R   R   + RSR  D DG  DR+G            + DRY+D
Sbjct: 131 RRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYMD 190

Query: 186 ER--YNGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGY-V 245
            R   +GGRY  RDRFD   DKY  RD Y  +RY   GDRF  SDRY + + + +N Y  
Sbjct: 191 GRRDRDGGRYSYRDRFD-SGDKYEPRDHYPFERYAPPGDRFV-SDRYGMPEHHLENEYRG 250

Query: 246 KDRVYDRDIGPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRV-GRPSSYDRY 284
           ++R YDRD   R  SDRYG  GP R EGR YR R GPYDRPSR  GRPSSY+R+
Sbjct: 251 RERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Csa2G324460 vs. TAIR10
Match: AT3G26420.1 (AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-41
Identity = 110/281 (39.15%), Postives = 149/281 (53.02%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           M+   EYR F+GGL+W  S+R L +AF ++G ++E +++L++ +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEG----DDTEQGFRGGGYSSGGRASFGRGKDRS 120
           MD+AI  M+G +L  R I+V+KA+P   G    +D ++G   G      R S GR     
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGR----- 120

Query: 121 VGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERY 180
            G  +CFKCG+PGH+AR+CPS     GGGR S S   R+ S  + DR+G   DRY  +  
Sbjct: 121 -GGGDCFKCGKPGHFARECPSESSRDGGGRFS-SKDDRYSS--KDDRYGAKDDRYGAKE- 180

Query: 181 NGGRYGDR-DRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVY 240
              RYG + DR+  +DD+Y S+    DDRY   G R  G  RY             DR  
Sbjct: 181 --DRYGAKDDRYSSKDDRYSSK----DDRY---GSRDGGGSRYG-----------PDRSG 240

Query: 241 DRDIG-PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVG 276
           +R  G  R G  R   GG         R    PYDRP   G
Sbjct: 241 ERAGGRSRDGGSRGAPGGE--------RHSRAPYDRPRAGG 243

[Close]
BLAST of Csa2G324460 vs. TAIR10
Match: AT2G21660.1 (AT2G21660.1 cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 121.3 bits (303), Expect = 9.5e-28
Identity = 77/184 (41.85%), Postives = 100/184 (54.35%), Query Frame = 1 

Query: 1   MASKD-EYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRR 60
           MAS D EYR FVGGL+W   +R LE AF ++G +++++I+ +R+TGR RGFGF+TF D +
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  GMDDAIREMHGQELGERIISVNKAEPK-MEGDDTEQGFRGGGYSSGGRASFGRGKDRSVG 120
            M DAI  M+GQ+L  R I+VN+A+ +   G    +G  GGGY SGG   +  G     G
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 QDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNG 180
                     G   R+    GGG  GG G +SSR      G G  +GG R      R  G
Sbjct: 121 ----------GGGRRE---GGGGYSGGGGGYSSRG-----GGGGSYGGGR------REGG 160

Query: 181 GRYG 183
           G YG
Sbjct: 181 GGYG 160

[Close]
BLAST of Csa2G324460 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-26
Identity = 67/170 (39.41%), Postives = 94/170 (55.29%), Query Frame = 1 

Query: 3   SKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRGMD 62
           S+ EYR FVGGL+W  ++  L+  F +FG +++++I+ +R++GR RGFGF+TF D + M 
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 63  DAIREMHGQELGERIISVNKAEPK-MEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQDE 122
           DAI EM+G+EL  R+I+VN+A+ +   G    +G  GGGY SGG      G   S G   
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGG------GGGYSGGGGG 121

Query: 123 CFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRY 172
            +  G  G + R     G G GGG   +    R +  G G   GGD   Y
Sbjct: 122 GYSGGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYG---GGDGGSY 162

[Close]
BLAST of Csa2G324460 vs. NCBI nr
Match: gi|449465308|ref|XP_004150370.1| (PREDICTED: glycine-rich RNA-binding protein RZ1C-like [Cucumis sativus])

HSP 1 Score: 602.1 bits (1551), Expect = 5.2e-169
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD
Sbjct: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180
           ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR
Sbjct: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180

Query: 181 YGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIG 240
           YGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIG
Sbjct: 181 YGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIG 240

Query: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY
Sbjct: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 283

[Close]
BLAST of Csa2G324460 vs. NCBI nr
Match: gi|1009120207|ref|XP_015876797.1| (PREDICTED: glycine-rich RNA-binding protein RZ1C isoform X1 [Ziziphus jujuba])

HSP 1 Score: 446.4 bits (1147), Expect = 3.6e-122
Identity = 211/284 (74.30%), Postives = 246/284 (86.62%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA+K++YRIFVGGLSWN++ERQLENAF RFGK++E QIM+ERDTGRPRGFGFITF+DRRG
Sbjct: 1   MAAKEDYRIFVGGLSWNVTERQLENAFARFGKVVEAQIMMERDTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           M+DAIREMHG+E G+R ISVNKA+PKM G+D + G+R GGYSSG R S+  G DRSVGQD
Sbjct: 61  MEDAIREMHGREFGDRTISVNKAQPKMGGEDVDHGYR-GGYSSGSRRSY-VGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRF-DSDGRGDRFGGDRDRYVDERYNGG 180
           +CFKCGRPGHWARDCPS GGGRGGG GSFSS SR+  + GRGDRFG DRDRY+D+RY+GG
Sbjct: 121 DCFKCGRPGHWARDCPSSGGGRGGGGGSFSSHSRYGGAGGRGDRFGRDRDRYIDDRYDGG 180

Query: 181 RYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDI 240
           RYG+RDRFD R++KYGSR+RY  DRY  A +RF  SDRY  +DR+PQNGY KDR YDRD 
Sbjct: 181 RYGERDRFDSRENKYGSRERYMGDRYAPA-ERF-ASDRYGGADRHPQNGYDKDRGYDRDA 240

Query: 241 GPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           G R G DRYGSGGPGR+EG+SYR+R GPYDRP+R GRPSS+DRY
Sbjct: 241 GGRGGGDRYGSGGPGRNEGKSYRNRAGPYDRPNRAGRPSSFDRY 280

[Close]
BLAST of Csa2G324460 vs. NCBI nr
Match: gi|470143353|ref|XP_004307343.1| (PREDICTED: glycine-rich RNA-binding protein RZ1C isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 444.5 bits (1142), Expect = 1.4e-121
Identity = 215/287 (74.91%), Postives = 237/287 (82.58%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA ++EYRIFVGGL++ ++E +LE+AF RFGK+ E QIMLERDT RPRGFGFITF DRR 
Sbjct: 1   MAGREEYRIFVGGLAYEVTEHELESAFARFGKVHEAQIMLERDTKRPRGFGFITFGDRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGG----YSSGGRASFGRGKDRS 120
           M+DAIREMHGQELG R ISVNKA+P+M G+D++ G+RGGG    YSSGGR S+G G DRS
Sbjct: 61  MEDAIREMHGQELGSRTISVNKAQPRMGGEDSDHGYRGGGGGGGYSSGGRRSYGGGGDRS 120

Query: 121 VGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERY 180
           VGQDECFKCGR GHWARDCPS GGGRGGG GSFSS SRF   GR DRFGGD DRY+D+RY
Sbjct: 121 VGQDECFKCGRTGHWARDCPSAGGGRGGGGGSFSSHSRFGGGGRVDRFGGDHDRYMDDRY 180

Query: 181 NGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYD 240
           +GGRYGDRDRFD R+DKYGSRDRY  DRYP AGDRF  SDRY  SDRYPQNGY KDR YD
Sbjct: 181 DGGRYGDRDRFDSREDKYGSRDRYVSDRYP-AGDRF-ASDRYGGSDRYPQNGYGKDRGYD 240

Query: 241 RDIGPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           RD G R GSDRYG GGP R EG  YR R GPYDRPSR GRPSS+DRY
Sbjct: 241 RDGGVRGGSDRYGRGGPARDEG-GYRSRAGPYDRPSRGGRPSSFDRY 284

[Close]
BLAST of Csa2G324460 vs. NCBI nr
Match: gi|657943256|ref|XP_008362467.1| (PREDICTED: glycine-rich RNA-binding, abscisic acid-inducible protein-like isoform X1 [Malus domestica])

HSP 1 Score: 442.2 bits (1136), Expect = 6.9e-121
Identity = 217/287 (75.61%), Postives = 241/287 (83.97%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+EYRIFVGGLSW+++ERQ+E+AF RFGK+LE QIM+ERDT RPRGFGFITF DRR 
Sbjct: 1   MAGKEEYRIFVGGLSWDVTERQMESAFQRFGKVLEAQIMMERDTNRPRGFGFITFGDRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKM----EGDDTEQGFRGGGYSSGGRASFGRGKDRS 120
           M+DAIREMHG+ELG+RIISVNKA+PKM     G+D++ G+R GGYSSG R ++G G DR 
Sbjct: 61  MEDAIREMHGRELGDRIISVNKAQPKMGGGGAGEDSDHGYRXGGYSSGDRRNYG-GGDRP 120

Query: 121 VGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERY 180
           VGQDECFKCGRPGHWARDCPS GGGRGGG GSFSS SRF   GRGDRFGGDR RY+D+RY
Sbjct: 121 VGQDECFKCGRPGHWARDCPSAGGGRGGG-GSFSSHSRFGXGGRGDRFGGDRGRYMDDRY 180

Query: 181 NGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYD 240
           +GGRYGDRDRFD RDDKYGSRDRY  DRYP AGDRF  SDRY  SDRYPQNGY KDR YD
Sbjct: 181 DGGRYGDRDRFDSRDDKYGSRDRYVSDRYP-AGDRF-ASDRYGXSDRYPQNGYGKDRGYD 240

Query: 241 RDIGPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           RD GPR G DRY SGGP R +  +YR R GPYDRPSR GRPSS+DRY
Sbjct: 241 RDGGPR-GGDRYASGGPARDD--NYRSRPGPYDRPSRGGRPSSFDRY 280

[Close]
BLAST of Csa2G324460 vs. NCBI nr
Match: gi|731412387|ref|XP_002267178.2| (PREDICTED: glycine-rich RNA-binding protein RZ1C [Vitis vinifera])

HSP 1 Score: 440.7 bits (1132), Expect = 2.0e-120
Identity = 209/283 (73.85%), Postives = 242/283 (85.51%), Query Frame = 1 

Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+E RIFVGGLSW+++ERQLEN F RFGK++E+QIMLERDTGRPRGFGFIT+ADRRG
Sbjct: 61  MAGKEENRIFVGGLSWDVTERQLENTFSRFGKIIESQIMLERDTGRPRGFGFITYADRRG 120

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           M+DAIREMHG++ G+RIISVNKA+PKM G+D + G+  GGYSSGGR S+G G DRS GQD
Sbjct: 121 MEDAIREMHGRDFGDRIISVNKAQPKM-GEDPDHGY-NGGYSSGGRGSYG-GGDRSAGQD 180

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180
           +CFKCGRPGHWARDCPS GGGRG G   F SRSRF S GRGDRFGG+RDRY+++RY+GGR
Sbjct: 181 DCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRF-SGGRGDRFGGERDRYMEDRYDGGR 240

Query: 181 YGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIG 240
           YGDRDRF+ RD+KYG+RDRY +DRY  +GDRF+G DRY  SDRYPQNGY KDR YDRD  
Sbjct: 241 YGDRDRFESRDNKYGTRDRYVNDRYAPSGDRFSG-DRYGGSDRYPQNGYGKDRGYDRDAA 300

Query: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           PR G DRY  GG  R+EGRSYR+R GPYDRP+R GRPSS+DRY
Sbjct: 301 PRGGGDRYAGGGSARNEGRSYRNRPGPYDRPNRGGRPSSFDRY 338

The following BLAST results are available for this feature:
BLAST of Csa2G324460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RZ1C_ARATH1.5e-8858.52Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1[more]
RZ1B_ARATH2.4e-8156.46Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1[more]
RZ1A_ARATH2.7e-4039.15Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1[more]
GRP1_SINAL7.6e-2743.86Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1[more]
RBG7_ARATH1.7e-2641.85Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1[more]
BLAST of Csa2G324460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQB5_CUCSA3.6e-169100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G324460 PE=4 SV=1[more]
F6HNC0_VITVI1.4e-12073.85Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05080 PE=4 SV=... [more]
M5XLS7_PRUPE1.8e-12075.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009799mg PE=4 SV=1[more]
B9HUL0_POPTR5.9e-11972.89Glycine-rich RNA-binding family protein OS=Populus trichocarpa GN=POPTR_0010s235... [more]
A0A067EAL8_CITSI1.0e-11872.89Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023559mg PE=4 SV=1[more]
BLAST of Csa2G324460 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04280.18.7e-9058.52 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT1G60650.11.3e-8256.46 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT3G26420.11.5e-4139.15 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc... [more]
AT2G21660.19.5e-2841.85 cold, circadian rhythm, and rna binding 2[more]
AT4G39260.12.3e-2639.41 cold, circadian rhythm, and RNA binding 1[more]
BLAST of Csa2G324460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465308|ref|XP_004150370.1|5.2e-169100.00PREDICTED: glycine-rich RNA-binding protein RZ1C-like [Cucumis sativus][more]
gi|1009120207|ref|XP_015876797.1|3.6e-12274.30PREDICTED: glycine-rich RNA-binding protein RZ1C isoform X1 [Ziziphus jujuba][more]
gi|470143353|ref|XP_004307343.1|1.4e-12174.91PREDICTED: glycine-rich RNA-binding protein RZ1C isoform X1 [Fragaria vesca subs... [more]
gi|657943256|ref|XP_008362467.1|6.9e-12175.61PREDICTED: glycine-rich RNA-binding, abscisic acid-inducible protein-like isofor... [more]
gi|731412387|ref|XP_002267178.2|2.0e-12073.85PREDICTED: glycine-rich RNA-binding protein RZ1C [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR001878Znf_CCHC
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085273cucumber EST collection version 3.0transcribed_cluster
CU092732cucumber EST collection version 3.0transcribed_cluster
CU098790cucumber EST collection version 3.0transcribed_cluster
CU144388cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G324460.1Csa2G324460.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU144388CU144388transcribed_cluster
CU085273CU085273transcribed_cluster
CU092732CU092732transcribed_cluster
CU098790CU098790transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..78
score: 6.6
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..81
score: 2.2
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 7..85
score: 18
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 112..143
score: 7.7
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 121..137
score: 8.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 121..137
score: 2.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 122..137
score: 11
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 103..142
score: 4.32
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 5..101
score: 4.3
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 4..114
score: 2.71
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 1..89
score: 6.9
NoneNo IPR availablePANTHERPTHR24012:SF459RNA-BINDING PROTEIN 4Fcoord: 1..89
score: 6.9