CsGy2G016310 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G016310
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Glycine-rich RNA-binding family protein
Location	Chr2 : 16322259 .. 16325566 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGAAAGACGAGTATCGAATATTTGTTGGAGGCCTCTCATGGAACATTTCAGAGCGTCAGCTCGAAAACGCTTTCATTCGCTTCGGCAAAATGCTCGAAACTCAAGTAAACTTTCGTTTTTTTCCTTTCTTTCTTTTTTCGTCATATTACGCTTCGTATTTGTTCATCAATCTGTAGAATATTATGAATTTTTTTTGGCATGCATGCGGTAGAAGATGAGGAGTCTAATGTATTTTCTTAGCAAAGACTATCAAAGATGTGAACCCCTTGATTTTTAATTTTTCTTTAATGAAGATGCCTGCTATTATTTGACGGCATTCCTTGCCGTTTATGGGTTTTCCTTCTCTACAATGCATGCCAATTGAATTTTATTAGTTGTGTGAATTTTGTTTATAATCTTATGTTACTTATTTGTTATAAATAAAATTTTTTGCACATGGACGTTGGATGAAATTTCAGGATTTATTGATTTATTTAAGCTATATGAATCTGAATTTTTCAGATCAGTTGTACTTACAAGATTATAGCAAATAGTTTTTTTTCAGGCTCTCTTTCTTACCATCCTTTGATCTTTTGTTATGTAGAATATGGTTCAGGGAGTCAGCTTAAAGCTGAATACATGGATCTGTTCGTACATTTTCTGCTGAATTCTTTCATAAAATTGAAGAAATGGTGTTAGTAGACAAGAAATCTATCCATCAGTATGCTTACATTGGAAGAAATTGGTTGGAAACTGATGGTTTTTTATGTGAAAAACGTCGTCACAATAGTGTTTCAGAAATTTTACTTGGTTCCCTCTCTTAGGACATCTGGTGAAGTGTTTCGTCTCGGGATGAGAATCTAAACTTGGCACAATTTTTGAAATTAGATCAAGACTCTTTTCTCCCAAAACTAAACTTTTTGTGTCCAACATACGGTTTGTTGATGTAGTTTCCTACTTGTCAAAGTATATGAGAAAGTAACACTTGTATTTCATGGAAATGTATCAGAGTGGCGTTCTCTTGGTCATCTTGCTGCCATTTATTGTTAGTACACCGCACTTCACTGACAATTCAGAGATTAGATTTGGGCATAAGTTGTATTGAACAGATGCTTCTAGAACTCTTAAGGTTCAGATTTTTTTAAAAAAAGAATTATTTACACCGGGCCTCCTTGTTAAGAGATTTTGCAAAGTTGTCCTTAATAGCATTCAAGATATATTAAACTTGATTTTTATTGCCTAATGCAGCGGAGTTTGGTTATTTTCTTGCTCTGTCAGTGTAAATAGTGAATAAATGCATTCAAGGGGAGTACATTATCACCTGCCTCGCTGTTGGCATACCGTCTAAGGTTCTTGCTTGGCAACTCTGTGGATTGAGAACTTCTTATAACCAAATTAGAATTTACGGTTCTAGACGTCAGGATTTATTTTAGTTGCTTGGCTATGGAAGGAAGCTATTGCTGAAACATTTTAGAGTTAGTTCACTTGAGAAAATGTGAGACATTGTATTGAAATTACCTTAGTTGTCAGCACCAGCTTGTTCTGTTTTAGATGACCAGACTTCGCTGTAAATTGAATTAAATTGTGGAGATGACACCAGAATGCAGAAGAATCTGAATTTTGATTTTGCTATGTTAGTTGTTCAGTGAAAAGGAGGAACTCAGTTTATATGAATAAGCTAAGAAGTGCATTTCAGGTGAGGAATATTTTTAATGCATTGTTGTACTTACTGCGGTATTGAATTGGGTGGTGGCGTGATGTTGAGAAACACTAGCAAAAAATTATCTCTCCAAGAATTTTTTCTTCTCGATTTTCTCATGTTCTGGGTTCTGGACTCTAGAATGAGTGAATTGTTTGCCTGGGCTATTATTTTATTTTACCTTTTGGATAAGAAACAACTTTTTTCTGACTGGGTTACGAAAAATGCAATATTGTCTGAATGCTACAATAAATTAAGGCTGTGCATTGGTGGTGGAGTAATTTCAGCAGATCAGTAGGAATGTTGTCTTGGGTAATCATCTTCATGGACGGCTTTCTTTTTAGCTTGAAGAGCTTAAGATCCTGACTTTTCCATGGAAAATTTCCTAGTTTGGACCCAAAGAGGTTGTGGGTATTGAGGTTAAAGTTGCTCTTTAATTGTAGATTTTAAGTCTTGGGTTCAGGTTGTTGGACACACTGCAGAGCTTTGAAGGGAAAACGGAATCCTTCCAAGTATATCATTTAGTCTCTCTTTAAGTGATTTGCTTGGAAGGAAAAGTAAGTTGTCAAGAATTTTAATTGTTTTCCACAAATTATATTCCCTGCATTAACTATAAAACATTTTCAGTCAGTCTGTTGGACGTGTACTGTGAACTAATTTAATACTGATTCATCTATAATAATGGAAACTTGTTGGATGAGCTTCTCTTTTGATGTTTATGTGTAGATCATGTTAGAACGAGATACAGGTCGTCCTCGTGGGTTTGGTTTTATTACCTTTGCAGACCGTAGAGGGATGGATGATGCAATAAGAGAGATGCATGGTCAGGAGCTTGGTGAGCGGATTATCTCAGTAAATAAGGCTGAACCCAAGATGGAGGGTGATGATACTGAGCAAGGCTTCAGGGGAGGAGGTTATTCATCTGGTGGTAGGGCTAGTTTTGGGAGAGGAAAAGATAGATCTGTGGGGCAGGATGAATGCTTCAAGTGTGGACGCCCAGGGCATTGGGCACGAGACTGTCCCTCAGTCGGTGGTGGACGTGGTGGAGGTAGAGGTTCATTTTCTTCACGTTCTCGATTTGATAGTGATGGTCGTGGGGATCGTTTTGGAGGAGATCGTGACCGATATGTGGATGAGCGTTATAATGGAGGGCGATATGGTGATAGAGATCGTTTTGATCGTAGAGACGACAAGTATGGAAGTCGAGACCGCTACTTCGACGACAGGTTGCTTTACATCCTTTCTTTGTTTTAATAACAATTACAATAGTGATCTACATGTGTTAACACCCATTCCAACTTTTTGTACTCGTACATTTACTTCAAAATATGATTTGATTGACATGTTATTGAAATTTTGGCAATTGTATGCAAACTCTGCAGGTACCCATCTGCTGGAGATCGCTTTACTGGTAGTGATAGGTATGATGTCAGCGATCGTTATCCTCAAAATGGCTACGTCAAAGACCGCGTCTACGATAGGGATATTGGTCCGAGGAGTGGCAGTGATAGGTATGGTAGCGGAGGTCCTGGCCGTCATGAGGGCAGAAGTTATAGAGATAGGACAGGCCCTTACGATCGCCCAAGCAGGGTGGGACGACCATCTTCCTACGACCGCTATTAA

mRNA sequence

ATGGCTTCGAAAGACGAGTATCGAATATTTGTTGGAGGCCTCTCATGGAACATTTCAGAGCGTCAGCTCGAAAACGCTTTCATTCGCTTCGGCAAAATGCTCGAAACTCAAATCATGTTAGAACGAGATACAGGTCGTCCTCGTGGGTTTGGTTTTATTACCTTTGCAGACCGTAGAGGGATGGATGATGCAATAAGAGAGATGCATGGTCAGGAGCTTGGTGAGCGGATTATCTCAGTAAATAAGGCTGAACCCAAGATGGAGGGTGATGATACTGAGCAAGGCTTCAGGGGAGGAGGTTATTCATCTGGTGGTAGGGCTAGTTTTGGGAGAGGAAAAGATAGATCTGTGGGGCAGGATGAATGCTTCAAGTGTGGACGCCCAGGGCATTGGGCACGAGACTGTCCCTCAGTCGGTGGTGGACGTGGTGGAGGTAGAGGTTCATTTTCTTCACGTTCTCGATTTGATAGTGATGGTCGTGGGGATCGTTTTGGAGGAGATCGTGACCGATATGTGGATGAGCGTTATAATGGAGGGCGATATGGTGATAGAGATCGTTTTGATCGTAGAGACGACAAGTATGGAAGTCGAGACCGCTACTTCGACGACAGGTACCCATCTGCTGGAGATCGCTTTACTGGTAGTGATAGGTATGATGTCAGCGATCGTTATCCTCAAAATGGCTACGTCAAAGACCGCGTCTACGATAGGGATATTGGTCCGAGGAGTGGCAGTGATAGGTATGGTAGCGGAGGTCCTGGCCGTCATGAGGGCAGAAGTTATAGAGATAGGACAGGCCCTTACGATCGCCCAAGCAGGGTGGGACGACCATCTTCCTACGACCGCTATTAA

Coding sequence (CDS)

ATGGCTTCGAAAGACGAGTATCGAATATTTGTTGGAGGCCTCTCATGGAACATTTCAGAGCGTCAGCTCGAAAACGCTTTCATTCGCTTCGGCAAAATGCTCGAAACTCAAATCATGTTAGAACGAGATACAGGTCGTCCTCGTGGGTTTGGTTTTATTACCTTTGCAGACCGTAGAGGGATGGATGATGCAATAAGAGAGATGCATGGTCAGGAGCTTGGTGAGCGGATTATCTCAGTAAATAAGGCTGAACCCAAGATGGAGGGTGATGATACTGAGCAAGGCTTCAGGGGAGGAGGTTATTCATCTGGTGGTAGGGCTAGTTTTGGGAGAGGAAAAGATAGATCTGTGGGGCAGGATGAATGCTTCAAGTGTGGACGCCCAGGGCATTGGGCACGAGACTGTCCCTCAGTCGGTGGTGGACGTGGTGGAGGTAGAGGTTCATTTTCTTCACGTTCTCGATTTGATAGTGATGGTCGTGGGGATCGTTTTGGAGGAGATCGTGACCGATATGTGGATGAGCGTTATAATGGAGGGCGATATGGTGATAGAGATCGTTTTGATCGTAGAGACGACAAGTATGGAAGTCGAGACCGCTACTTCGACGACAGGTACCCATCTGCTGGAGATCGCTTTACTGGTAGTGATAGGTATGATGTCAGCGATCGTTATCCTCAAAATGGCTACGTCAAAGACCGCGTCTACGATAGGGATATTGGTCCGAGGAGTGGCAGTGATAGGTATGGTAGCGGAGGTCCTGGCCGTCATGAGGGCAGAAGTTATAGAGATAGGACAGGCCCTTACGATCGCCCAAGCAGGGTGGGACGACCATCTTCCTACGACCGCTATTAA

Protein sequence

MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRGMDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIGPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY

Homology

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BLAST of CsGy2G016310 vs. NCBI nr
Match: XP_004150370.1 (PREDICTED: glycine-rich RNA-binding protein RZ1C-like [Cucumis sativus] >KGN62191.1 hypothetical protein Csa_2G324460 [Cucumis sativus])

HSP 1 Score: 508.8 bits (1309), Expect = 1.2e-140
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD
Sbjct: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180
           ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR
Sbjct: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180

Query: 181 YGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDIG 240
           YGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDIG
Sbjct: 181 YGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDIG 240

Query: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY
Sbjct: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 283

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BLAST of CsGy2G016310 vs. NCBI nr
Match: XP_022133790.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Momordica charantia])

HSP 1 Score: 405.2 bits (1040), Expect = 1.8e-109
Identity = 238/284 (83.80%), Postives = 246/284 (86.62%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDEYRIFVGGLSWNISERQLENAF R+GK+LETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MDDAIREMHG+ELGER ISVNKAEPKMEGDD E GFRGGGYSSGGR SFGRG DRSVGQD
Sbjct: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180
           ECFKCGRPGHWARDCPSVGG                   RGDRFGGDRDRYVD+RY+GGR
Sbjct: 121 ECFKCGRPGHWARDCPSVGGXXXXXXXXXXXXXXXXXXXRGDRFGGDRDRYVDDRYDGGR 180

Query: 181 YGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDR-VYDRDI 240
           YGDRD F XXXXXXXXXXXXXXXXXX  GDRF   XXXXXXXXXX NGYVKDR  Y+RDI
Sbjct: 181 YGDRDHFXXXXXXXXXXXXXXXXXXXXXGDRFAXXXXXXXXXXXXXNGYVKDRGGYNRDI 240

Query: 241 GPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           GPRSGSDRYGSGGPGR+EGRSYRDR GPYDRPSR GRPSSY+RY
Sbjct: 241 GPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 284

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BLAST of CsGy2G016310 vs. NCBI nr
Match: XP_022990423.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima])

HSP 1 Score: 363.6 bits (932), Expect = 6.0e-97
Identity = 217/289 (75.09%), Postives = 229/289 (79.24%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA+KDEYRIFVGGLSWN+SER+LENAF R+GK++ETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MDDAIREMHG E GERIISVNKAEPKMEGDD E GFRGG            G DRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGXXXXXXXXXXXXGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGG- 180
           ECFKCGRPGHWARDCPS G                D D RGDRFGGDRDRYVD+RY+GG 
Sbjct: 121 ECFKCGRPGHWARDCPSAGXXXXXXXXXXXXXXXXDGDSRGDRFGGDRDRYVDDRYDGGR 180

Query: 181 ---RYGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDR-VY 240
              RYGDRDRFDXXXXXXXXXXXXXXXXXX         XXXXX     QNGYVKDR  Y
Sbjct: 181 XXXRYGDRDRFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDRYPQNGYVKDRGGY 240

Query: 241 DRDIGPRSGSDRYGS-GGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           DRDIGPRSGSDRYG+ GGPGR+EGR+YRDR GPYDRPSR GRPSSY+RY
Sbjct: 241 DRDIGPRSGSDRYGTGGGPGRYEGRNYRDRPGPYDRPSRGGRPSSYERY 289

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BLAST of CsGy2G016310 vs. NCBI nr
Match: XP_006485577.1 (glycine-rich RNA-binding protein RZ1C isoform X1 [Citrus sinensis] >XP_024042323.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Citrus clementina] >KDO48242.1 hypothetical protein CISIN_1g023559mg [Citrus sinensis])

HSP 1 Score: 358.2 bits (918), Expect = 2.5e-95
Identity = 207/284 (72.89%), Postives = 233/284 (82.04%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDE RIFVGGLSWN++ERQLENAF RFGK++E QIMLERD+GRPRGFGFIT+ADRR 
Sbjct: 1   MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MDDAIREMHG+E G+R+ISVNKA+PKM G+ ++ G+RGGGYSSGGR S+  G DR  GQD
Sbjct: 61  MDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHGYRGGGYSSGGRGSY--GADRPGGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDG-RGDRFGGDRDRYVDERYNGG 180
           +CFKCGRPGHWARDCPS  GGRGG  GSFSSRSRF   G RGD  GG RDRY+D+RY+GG
Sbjct: 121 DCFKCGRPGHWARDCPSAVGGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDDRYDGG 180

Query: 181 RYGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDI 240
           RYGDRDR+D    XXXXXXXXXXXXX  AGDR  G XXXXXXXX   NGY K+R Y+RD+
Sbjct: 181 RYGDRDRYDSKDSXXXXXXXXXXXXXPPAGDRLAGXXXXXXXXXPV-NGYGKERGYERDV 240

Query: 241 GPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           G R+GSDRY SGGP R +GR YR R  PYDRPSR  RP S+DRY
Sbjct: 241 GARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRP-SFDRY 280

[Close]

BLAST of CsGy2G016310 vs. NCBI nr
Match: XP_002267178.2 (PREDICTED: glycine-rich RNA-binding protein RZ1C [Vitis vinifera])

HSP 1 Score: 345.5 bits (885), Expect = 1.7e-91
Identity = 203/283 (71.73%), Postives = 231/283 (81.63%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+E RIFVGGLSW+++ERQLEN F RFGK++E+QIMLERDTGRPRGFGFIT+ADRRG
Sbjct: 61  MAGKEENRIFVGGLSWDVTERQLENTFSRFGKIIESQIMLERDTGRPRGFGFITYADRRG 120

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           M+DAIREMHG++ G+RIISVNKA+PKM G+D + G+  GGYSSGGR S+G G DRS GQD
Sbjct: 121 MEDAIREMHGRDFGDRIISVNKAQPKM-GEDPDHGY-NGGYSSGGRGSYG-GGDRSAGQD 180

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180
           +CFKCGRPGHWARDCPS GGGRG G   F SRSRF S GRGDRFGG+RDRY+++RY+GGR
Sbjct: 181 DCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRF-SGGRGDRFGGERDRYMEDRYDGGR 240

Query: 181 YGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDIG 240
           YGDRDRF+       XXXXXXXXXXX         XXXXXXXXXXQNGY KDR YDRD  
Sbjct: 241 YGDRDRFE-SRDNKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNGYGKDRGYDRDAA 300

Query: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           PR G DRY      R+EGRSYR+R GPYDRP+R GRPSS+DRY
Sbjct: 301 PRGGGDRYXXXXXARNEGRSYRNRPGPYDRPNRGGRPSSFDRY 338

[Close]

BLAST of CsGy2G016310 vs. TAIR10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 208.0 bits (528), Expect = 7.7e-54
Identity = 170/311 (54.66%), Postives = 197/311 (63.34%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA+K+  RIFVGGLS  +++R LE AF RFG +L+ QIMLERDTGR RGFGFITFADRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTE-QGFRGG---GYSSGGRASF--GRGKD 120
           MD++IREMHG++ G+R+ISVN+AEPK+  DD E  G RGG   GYS  G+ SF       
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFXXXXXXX 120

Query: 121 RSVGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRF--DSDGRGDRFGGDR---- 180
             VG+DECFKCGR GHWARDCPS GGGRGG  G FSSR+     SDGR DR+  DR    
Sbjct: 121 XXVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRY-ADRXXXX 180

Query: 181 --DRYVDERYNG-GRYGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXX 240
                    Y+G  R        XXXXXXXXXXXXXXXXXX         XXXXXXXXX 
Sbjct: 181 XXXXXXXXXYDGAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP 240

Query: 241 QNGYVKDRVYDRDIGPRSGSDRYGSG------GPGRHEGRSYRDRTG-PYDRPSRVG--- 284
              Y K R ++RDI P +GSDRYG G             R +R R G PY+RPSR G   
Sbjct: 241 PGSYDKARSFERDIAPSAGSDRYGGGRAXXXXXXXXXXXRGFRSRAGAPYERPSRSGGGG 300

[Close]

BLAST of CsGy2G016310 vs. TAIR10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 204.9 bits (520), Expect = 6.5e-53
Identity = 159/292 (54.45%), Postives = 182/292 (62.33%), Query Frame = 0


Query: 6   EYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRGMDDAI 65
           E RIFVGGLSW+++ERQLE+ F R+GK+ E QIM+ RDTGRPRGFGFITF DRRG DDAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  REMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQDECFKC 125
           + MHG+ELG ++ISVNKAEPK+ G+D +Q  +GGGYSS G+ +          +DECFKC
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDECFKC 130

Query: 126 GRPGHWARDCPSVGGGRGGGRGSFSSRSRF-DSDGRGDRFGGDRDRYVDERYNGGRYGDR 185
            RPGHWARDCPS G  R   R   + RSR  D DG                         
Sbjct: 131 RRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRXXXXXXXXXXXXXXXXXXXXXXX 190

Query: 186 DRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYV------------KD 245
               XXXXXXXXXXXXXXXXXX         XXXXXXXXXX                 ++
Sbjct: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRE 250

Query: 246 RVYDRDIGPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRV-GRPSSYDRY 284
           R YDRD   R  SDRYG  GP R EGR YR R GPYDRPSR  GRPSSY+R+
Sbjct: 251 RSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]

BLAST of CsGy2G016310 vs. TAIR10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-27
Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           M+   EYR F+GGL+W  S+R L +AF ++G ++E +++L++ +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MD+AI  M+G +L  R I+V+KA+P   G   +                     R  G  
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDXXXXXXXXXXXXXXXXXXSGGR--GGG 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSR 153
           +CFKCG+PGH+AR+CPS     GGGR  FSS+
Sbjct: 121 DCFKCGKPGHFARECPSESSRDGGGR--FSSK 148

[Close]

BLAST of CsGy2G016310 vs. TAIR10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-20
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MASKD-EYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRR 60
          MAS D EYR FVGGL+W   +R LE AF ++G +++++I+ +R+TGR RGFGF+TF D +
Sbjct: 1  MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61 GMDDAIREMHGQELGERIISVNKAEPKMEG 90
           M DAI  M+GQ+L  R I+VN+A+ +  G
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQSRGSG 90

[Close]

BLAST of CsGy2G016310 vs. TAIR10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-19
Identity = 40/84 (47.62%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 3  SKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRGMD 62
          S+ EYR FVGGL+W  ++  L+  F +FG +++++I+ +R++GR RGFGF+TF D + M 
Sbjct: 2  SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 63 DAIREMHGQELGERIISVNKAEPK 87
          DAI EM+G+EL  R+I+VN+A+ +
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSR 85

[Close]

BLAST of CsGy2G016310 vs. Swiss-Prot
Match: sp|Q8RWN5|RZ1C_ARATH (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.4e-52
Identity = 170/311 (54.66%), Postives = 197/311 (63.34%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA+K+  RIFVGGLS  +++R LE AF RFG +L+ QIMLERDTGR RGFGFITFADRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTE-QGFRGG---GYSSGGRASF--GRGKD 120
           MD++IREMHG++ G+R+ISVN+AEPK+  DD E  G RGG   GYS  G+ SF       
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFXXXXXXX 120

Query: 121 RSVGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRF--DSDGRGDRFGGDR---- 180
             VG+DECFKCGR GHWARDCPS GGGRGG  G FSSR+     SDGR DR+  DR    
Sbjct: 121 XXVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRY-ADRXXXX 180

Query: 181 --DRYVDERYNG-GRYGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXX 240
                    Y+G  R        XXXXXXXXXXXXXXXXXX         XXXXXXXXX 
Sbjct: 181 XXXXXXXXXYDGAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP 240

Query: 241 QNGYVKDRVYDRDIGPRSGSDRYGSG------GPGRHEGRSYRDRTG-PYDRPSRVG--- 284
              Y K R ++RDI P +GSDRYG G             R +R R G PY+RPSR G   
Sbjct: 241 PGSYDKARSFERDIAPSAGSDRYGGGRAXXXXXXXXXXXRGFRSRAGAPYERPSRSGGGG 300

[Close]

BLAST of CsGy2G016310 vs. Swiss-Prot
Match: sp|O22703|RZ1B_ARATH (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.2e-51
Identity = 159/292 (54.45%), Postives = 182/292 (62.33%), Query Frame = 0


Query: 6   EYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRGMDDAI 65
           E RIFVGGLSW+++ERQLE+ F R+GK+ E QIM+ RDTGRPRGFGFITF DRRG DDAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  REMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQDECFKC 125
           + MHG+ELG ++ISVNKAEPK+ G+D +Q  +GGGYSS G+ +          +DECFKC
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDECFKC 130

Query: 126 GRPGHWARDCPSVGGGRGGGRGSFSSRSRF-DSDGRGDRFGGDRDRYVDERYNGGRYGDR 185
            RPGHWARDCPS G  R   R   + RSR  D DG                         
Sbjct: 131 RRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRXXXXXXXXXXXXXXXXXXXXXXX 190

Query: 186 DRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYV------------KD 245
               XXXXXXXXXXXXXXXXXX         XXXXXXXXXX                 ++
Sbjct: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRE 250

Query: 246 RVYDRDIGPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRV-GRPSSYDRY 284
           R YDRD   R  SDRYG  GP R EGR YR R GPYDRPSR  GRPSSY+R+
Sbjct: 251 RSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]

BLAST of CsGy2G016310 vs. Swiss-Prot
Match: sp|Q9LIN3|RZ1A_ARATH (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.5e-26
Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           M+   EYR F+GGL+W  S+R L +AF ++G ++E +++L++ +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MD+AI  M+G +L  R I+V+KA+P   G   +                     R  G  
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDXXXXXXXXXXXXXXXXXXSGGR--GGG 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSR 153
           +CFKCG+PGH+AR+CPS     GGGR  FSS+
Sbjct: 121 DCFKCGKPGHFARECPSESSRDGGGR--FSSK 148

[Close]

BLAST of CsGy2G016310 vs. Swiss-Prot
Match: sp|P49311|GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-20
Identity = 47/87 (54.02%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 1  MASKD-EYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRR 60
          MAS D EYR FVGGL+W   ER LE AF +FG++++++I+ +R+TGR RGFGF+TF D +
Sbjct: 1  MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61 GMDDAIREMHGQELGERIISVNKAEPK 87
           M DAI  M+GQ+L  R I+VN+A+ +
Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQSR 87

[Close]

BLAST of CsGy2G016310 vs. Swiss-Prot
Match: sp|P49310|GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.1e-20
Identity = 47/90 (52.22%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 1  MASKD-EYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRR 60
          MAS D EYR FVGGL+W   +R LE AF ++G++L+++I+ +R+TGR RGFGF+TF D +
Sbjct: 1  MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61 GMDDAIREMHGQELGERIISVNKAEPKMEG 90
           M DAI  M+GQ+L  R I+VN+A+ +  G
Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQSRGSG 90

[Close]

BLAST of CsGy2G016310 vs. TrEMBL
Match: tr|A0A0A0LQB5|A0A0A0LQB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324460 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 7.7e-141
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD
Sbjct: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180
           ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR
Sbjct: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180

Query: 181 YGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDIG 240
           YGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDIG
Sbjct: 181 YGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDIG 240

Query: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY
Sbjct: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 283

[Close]

BLAST of CsGy2G016310 vs. TrEMBL
Match: tr|A0A067EAL8|A0A067EAL8_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g023559mg PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 1.7e-95
Identity = 207/284 (72.89%), Postives = 233/284 (82.04%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDE RIFVGGLSWN++ERQLENAF RFGK++E QIMLERD+GRPRGFGFIT+ADRR 
Sbjct: 1   MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           MDDAIREMHG+E G+R+ISVNKA+PKM G+ ++ G+RGGGYSSGGR S+  G DR  GQD
Sbjct: 61  MDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHGYRGGGYSSGGRGSY--GADRPGGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDG-RGDRFGGDRDRYVDERYNGG 180
           +CFKCGRPGHWARDCPS  GGRGG  GSFSSRSRF   G RGD  GG RDRY+D+RY+GG
Sbjct: 121 DCFKCGRPGHWARDCPSAVGGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDDRYDGG 180

Query: 181 RYGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDI 240
           RYGDRDR+D    XXXXXXXXXXXXX  AGDR  G XXXXXXXX   NGY K+R Y+RD+
Sbjct: 181 RYGDRDRYDSKDSXXXXXXXXXXXXXPPAGDRLAGXXXXXXXXXPV-NGYGKERGYERDV 240

Query: 241 GPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           G R+GSDRY SGGP R +GR YR R  PYDRPSR  RP S+DRY
Sbjct: 241 GARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRP-SFDRY 280

[Close]

BLAST of CsGy2G016310 vs. TrEMBL
Match: tr|F6HNC0|F6HNC0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g05080 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.1e-91
Identity = 203/283 (71.73%), Postives = 231/283 (81.63%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+E RIFVGGLSW+++ERQLEN F RFGK++E+QIMLERDTGRPRGFGFIT+ADRRG
Sbjct: 1   MAGKEENRIFVGGLSWDVTERQLENTFSRFGKIIESQIMLERDTGRPRGFGFITYADRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           M+DAIREMHG++ G+RIISVNKA+PKM G+D + G+  GGYSSGGR S+G G DRS GQD
Sbjct: 61  MEDAIREMHGRDFGDRIISVNKAQPKM-GEDPDHGY-NGGYSSGGRGSYG-GGDRSAGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180
           +CFKCGRPGHWARDCPS GGGRG G   F SRSRF S GRGDRFGG+RDRY+++RY+GGR
Sbjct: 121 DCFKCGRPGHWARDCPSSGGGRGRGGAPFPSRSRF-SGGRGDRFGGERDRYMEDRYDGGR 180

Query: 181 YGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDIG 240
           YGDRDRF+       XXXXXXXXXXX         XXXXXXXXXXQNGY KDR YDRD  
Sbjct: 181 YGDRDRFE-SRDNKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNGYGKDRGYDRDAA 240

Query: 241 PRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           PR G DRY      R+EGRSYR+R GPYDRP+R GRPSS+DRY
Sbjct: 241 PRGGGDRYXXXXXARNEGRSYRNRPGPYDRPNRGGRPSSFDRY 278

[Close]

BLAST of CsGy2G016310 vs. TrEMBL
Match: tr|A0A2P5B092|A0A2P5B092_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_336260 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 3.7e-87
Identity = 200/284 (70.42%), Postives = 222/284 (78.17%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA+K++YRIFVGGLSWN++ERQLENAF RFGK+LE QIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAAKEDYRIFVGGLSWNVTERQLENAFARFGKVLEAQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           M+DAIR+MHG+E G+RIISVNKA+PKM  DDT+ G+R GGYSSGGR  +G G DRSVGQD
Sbjct: 61  MEDAIRDMHGREFGDRIISVNKAQPKMGDDDTDHGYR-GGYSSGGRRGYG-GGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDS-DGRGDRFGGDRDRYVDERYNGG 180
           +CFKCGRPGHWARDCPS GGGRGG  GSFSS SRF       DRFGGDRDRYVD+RY+ G
Sbjct: 121 DCFKCGRPGHWARDCPSAGGGRGG--GSFSSHSRFGGXXXXXDRFGGDRDRYVDDRYDAG 180

Query: 181 RYGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDI 240
           RYG+R+RFD        XXXXXXXXXX         XXXXXXXXXX              
Sbjct: 181 RYGERERFD--SRDSKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 GPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
           GPR G DRYGSGG  R+EGRSYR R GPYDRP R GRPSS++RY
Sbjct: 241 GPR-GGDRYGSGGAARNEGRSYRSRPGPYDRPYRGGRPSSFERY 277

[Close]

BLAST of CsGy2G016310 vs. TrEMBL
Match: tr|A0A2P5AZ64|A0A2P5AZ64_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_286860 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.4e-86
Identity = 199/284 (70.07%), Postives = 221/284 (77.82%), Query Frame = 0


Query: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60
           MA+K++YRIFVGGLSWN++ERQLENAF RFGK+LE QIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAAKEDYRIFVGGLSWNVTERQLENAFARFGKVLEAQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120
           M+DAIR+MHG+E G+RIISVNKA+PKM  DDT+ G+R GGYSSGGR  +G G DRSVGQD
Sbjct: 61  MEDAIRDMHGREFGDRIISVNKAQPKMGDDDTDHGYR-GGYSSGGRRGYG-GGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDS-DGRGDRFGGDRDRYVDERYNGG 180
           +CFKCGRPGHWARDCPS GGGRGG  GSFSS SRF       DRFGGDRDRYVD+RY+ G
Sbjct: 121 DCFKCGRPGHWARDCPSAGGGRGG--GSFSSHSRFGGXXXXXDRFGGDRDRYVDDRYDAG 180

Query: 181 RYGDRDRFDXXXXXXXXXXXXXXXXXXSAGDRFTGSXXXXXXXXXXQNGYVKDRVYDRDI 240
           RYG+R+RFD        XXXXXXXXXX         XXXXXXXXXX              
Sbjct: 181 RYGERERFD--SRDSKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 GPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 284
            PR G DRYGSGG  R+EGRSYR R GPYDRP R GRPSS++RY
Sbjct: 241 XPR-GGDRYGSGGAARNEGRSYRSRPGPYDRPYRGGRPSSFERY 277

The following BLAST results are available for this feature:

BLAST of CsGy2G016310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150370.1	1.2e-140	100.00	PREDICTED: glycine-rich RNA-binding protein RZ1C-like [Cucumis sativus] >KGN6219...	[more]
XP_022133790.1	1.8e-109	83.80	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Momordica charantia]	[more]
XP_022990423.1	6.0e-97	75.09	glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine...	[more]
XP_006485577.1	2.5e-95	72.89	glycine-rich RNA-binding protein RZ1C isoform X1 [Citrus sinensis] >XP_024042323...	[more]
XP_002267178.2	1.7e-91	71.73	PREDICTED: glycine-rich RNA-binding protein RZ1C [Vitis vinifera]	[more]

BLAST of CsGy2G016310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04280.1	7.7e-54	54.66	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.1	6.5e-53	54.45	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G26420.1	3.6e-27	41.45	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G21660.1	1.5e-20	51.11	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	1.2e-19	47.62	cold, circadian rhythm, and RNA binding 1	[more]

BLAST of CsGy2G016310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8RWN5\|RZ1C_ARATH	1.4e-52	54.66	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]
sp\|O22703\|RZ1B_ARATH	1.2e-51	54.45	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
sp\|Q9LIN3\|RZ1A_ARATH	6.5e-26	41.45	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
sp\|P49311\|GRP2_SINAL	4.1e-20	54.02	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
sp\|P49310\|GRP1_SINAL	9.1e-20	52.22	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of CsGy2G016310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQB5\|A0A0A0LQB5_CUCSA	7.7e-141	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324460 PE=4 SV=1	[more]
tr\|A0A067EAL8\|A0A067EAL8_CITSI	1.7e-95	72.89	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g023559mg PE=4 SV=1	[more]
tr\|F6HNC0\|F6HNC0_VITVI	1.1e-91	71.73	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g05080 PE=4 SV=...	[more]
tr\|A0A2P5B092\|A0A2P5B092_9ROSA	3.7e-87	70.42	Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_336260 P...	[more]
tr\|A0A2P5AZ64\|A0A2P5AZ64_PARAD	2.4e-86	70.07	Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_2868...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR036875	Znf_CCHC_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR001878	Znf_CCHC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G016310.1	CsGy2G016310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 121..137 e-value: 2.7E-6 score: 36.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 121..137 e-value: 9.0E-9 score: 34.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 122..137 score: 11.449
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..81 e-value: 2.2E-25 score: 100.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 8.2E-18 score: 63.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..85 score: 18.598
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 2..118 e-value: 1.4E-25 score: 91.9
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 119..158 e-value: 4.2E-9 score: 38.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..283
None	No IPR available	PANTHER	PTHR44993	FAMILY NOT NAMED	coord: 1..283
None	No IPR available	PANTHER	PTHR44993:SF1	GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-RELATED	coord: 1..283
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 103..142
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 4..114

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G016310	Cla013740	Watermelon (97103) v1	cgybwmB111
CsGy2G016310	Csa2G324460	Cucumber (Chinese Long) v2	cgybcuB063
CsGy2G016310	Csa5G622570	Cucumber (Chinese Long) v2	cgybcuB075
CsGy2G016310	MELO3C019833	Melon (DHL92) v3.5.1	cgybmeB101
CsGy2G016310	ClCG08G007820	Watermelon (Charleston Gray)	cgybwcgB158
CsGy2G016310	ClCG05G021270	Watermelon (Charleston Gray)	cgybwcgB136
CsGy2G016310	CSPI05G26870	Wild cucumber (PI 183967)	cgybcpiB076
CsGy2G016310	CmaCh04G025520	Cucurbita maxima (Rimu)	cgybcmaB245
CsGy2G016310	CmoCh04G026690	Cucurbita moschata (Rifu)	cgybcmoB233
CsGy2G016310	CmoCh18G009130	Cucurbita moschata (Rifu)	cgybcmoB192
CsGy2G016310	Cp4.1LG01g24600	Cucurbita pepo (Zucchini)	cgybcpeB211
CsGy2G016310	MELO3C019833.2	Melon (DHL92) v3.6.1	cgybmedB100
CsGy2G016310	CsaV3_2G021100	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G016310	Cla97C08G150570	Watermelon (97103) v2	cgybwmbB159
CsGy2G016310	Bhi04G001055	Wax gourd	cgybwgoB153
CsGy2G016310	Carg01695	Silver-seed gourd	carcgybB0814

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsGy2G016310	CsGy5G026320	Cucumber (Gy14) v2	cgybcgybB058

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G016310	Cucurbita pepo (Zucchini)	cgybcpeB184
CsGy2G016310	Cucurbita maxima (Rimu)	cgybcmaB190
CsGy2G016310	Cucurbita maxima (Rimu)	cgybcmaB219
CsGy2G016310	Cucurbita moschata (Rifu)	cgybcmoB183
CsGy2G016310	Bottle gourd (USVL1VR-Ls)	cgyblsiB127
CsGy2G016310	Silver-seed gourd	carcgybB0682