CmoCh04G023270 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G023270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	40S ribosomal protein S27
Location	Cmo_Chr04 : 17295484 .. 17297327 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAAATGAGGTTTTAGGGTTCTTGCTCCCTCCCTCTGCTGCGATCGTGCGCTTCTCTCTATAGGCCTCGCAGGATTTTCTTCTTTCACCGGTGTTCGTTCGAGATTTTTCCAAGATGGTGAGTTCTCATTCGTCTCCTACTCAGATTATTGTAGTGTAGAATCTTGTTTTTCGTTTCGGATCTGTTTGTTCGTAAAGTTGAATGTATTTTGGTGTGTTTAAGCCTCGGAGTTTTATTTGAAACGTTTTGAGTTGTGGATTCATGGTTGTAGGAAGAGGATACGAAGAATCGATACAAATGAAACCTCTGTATACTAGAATTTTTGCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTGTTATTTTTCAGATTTGTTCTGTCGTATTTAGAATTCTTTGGGTTTTGCGAACGAAAAATGCATTAAGATTATAGAAAGATGTGTTTCATAATATGAGCGGAGAACGCTAAGAAATGTTTATCGAGATAGTGTAAAAAATATTTTTCATTCCGCTACTCTGATGTACTGAATTCTATGAAATTCGTTTATTTTTTAAATTTTCGGGGGTTTTATTTTTATCTGATGTCCTCAAGTTATTTGGAATAGATTTCTTTGTATAACTGGTGTCCGTTGAATGGAATCTTGCTCTCGTGTTTGTAAATAGTTTCATATTTCTGTAGTGTACACATCACGTATGTCCTTAACAAACTTCTGCTACTTGAACGTCTCTTTCATGATTTTTTTTTTTTTTTTTATATAAAACCCGCAAGTCGAGTATTAAAGTCATATTAATGCATGTTCGAACTATTGGTATTAGCCAAGTGTAATGATAAAAAATACTGCTTTGGATTCTCAAATTGGAGTTGATCAACTTGGATTTTTTTTTTTTTTTTGACAATAGGTTCTCCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTGCAGTCGCCCAATTCCTTCTTCATGGTATACCTTTGATTTTATTTCAATTCCATACCATTATTTCTATGCCCATTTACTTTTTTTTTTCTCGGGAAGGCGCTTATTTGAAGCATACACATGCCAACCTGTTAACATTTCTGCTATTTCCTTGAATTATATGTTGTTCTGACAAGTTTTGCCTTTCATTGTGTATCGGCTTGAAGGACGTTAAGTGCCAGGGATGCTTTAACATGTAAGTGCCTTCCTTTTCATTAGTTAGTCTTACTCTGCAAATTTTCTGGATTCTGATCGAAGATATTGTGTTGAACCCGTCTGATTGTAGTTTTCTTTGATGATATGCAGTACCACTGTCTTTAGCCACTCTCAAACTGTTGTGGTATGCGGGAACTGCCAGACCGTCTTGTGCCAACCAACTGGAGGGCGTGCTAGACTCACCGAAGGGTGTTCTTTCAGGAGAAAGGGCGATTGATTGATTGATGATGAAGATGATGAGGTTCCTTGTTTCTTTTTGATGGAAGAAGACGCTGTCTCTGTTTTGATCATGGTATATTTATTTTTCTTGTACGGTACCAGACTTGATTGTGCTCTCACTCTCCTCAATAGATTATATTTGGCTTTTTAGAGTTATGGCTTTGTTTAAAAGAAGAATTTTATGTACCGAACTGTTAGTTTCATTTAGTAAAGTTTAGATTTCTTTCATCTGTTCTCTCATTTTGCTTCATTTAGTGAATGCCCATGATTTTATGACATGCATTCATCGATGATATCATTACTCATCTG

mRNA sequence

ATAAAAATGAGGTTTTAGGGTTCTTGCTCCCTCCCTCTGCTGCGATCGTGCGCTTCTCTCTATAGGCCTCGCAGGATTTTCTTCTTTCACCGGTGTTCGTTCGAGATTTTTCCAAGATGGTTCTCCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTGCAGTCGCCCAATTCCTTCTTCATGGACGTTAAGTGCCAGGGATGCTTTAACATTACCACTGTCTTTAGCCACTCTCAAACTGTTGTGGTATGCGGGAACTGCCAGACCGTCTTGTGCCAACCAACTGGAGGGCGTGCTAGACTCACCGAAGGGTGTTCTTTCAGGAGAAAGGGCGATTGATTGATTGATGATGAAGATGATGAGGTTCCTTGTTTCTTTTTGATGGAAGAAGACGCTGTCTCTGTTTTGATCATGGTATATTTATTTTTCTTGTACGGTACCAGACTTGATTGTGCTCTCACTCTCCTCAATAGATTATATTTGGCTTTTTAGAGTTATGGCTTTGTTTAAAAGAAGAATTTTATGTACCGAACTGTTAGTTTCATTTAGTAAAGTTTAGATTTCTTTCATCTGTTCTCTCATTTTGCTTCATTTAGTGAATGCCCATGATTTTATGACATGCATTCATCGATGATATCATTACTCATCTG

Coding sequence (CDS)

ATGGTTCTCCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTGCAGTCGCCCAATTCCTTCTTCATGGACGTTAAGTGCCAGGGATGCTTTAACATTACCACTGTCTTTAGCCACTCTCAAACTGTTGTGGTATGCGGGAACTGCCAGACCGTCTTGTGCCAACCAACTGGAGGGCGTGCTAGACTCACCGAAGGGTGTTCTTTCAGGAGAAAGGGCGATTGA

Homology

[Close]

BLAST of CmoCh04G023270 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-44
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh04G023270 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 7.3e-42
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh04G023270 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-41
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRK 85
          CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of CmoCh04G023270 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-41
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRK 85
          CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of CmoCh04G023270 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.2e-37
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          C +VLC PTG   RLTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of CmoCh04G023270 vs. TrEMBL
Match: A0A067JH67_JATCU (40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh04G023270 vs. TrEMBL
Match: B9RG16_RICCO (40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh04G023270 vs. TrEMBL
Match: A0A059CAJ6_EUCGR (40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh04G023270 vs. TrEMBL
Match: A0A0A0KTU2_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh04G023270 vs. TrEMBL
Match: A0A0K9QTH7_SPIOL (40S ribosomal protein S27 OS=Spinacia oleracea GN=SOVF_029410 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.0e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh04G023270 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27)

HSP 1 Score: 179.5 bits (454), Expect = 8.9e-46
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh04G023270 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 169.5 bits (428), Expect = 9.2e-43
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRK 85
          CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of CmoCh04G023270 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-42
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRK 85
          CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of CmoCh04G023270 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 150.2 bits (378), Expect = 5.8e-37
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQ VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61 CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of CmoCh04G023270 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis])

HSP 1 Score: 182.2 bits (461), Expect = 3.9e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh04G023270 vs. NCBI nr
Match: gi|1009143419|ref|XP_015889256.1| (PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba])

HSP 1 Score: 181.4 bits (459), Expect = 6.6e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAE+EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmoCh04G023270 vs. NCBI nr
Match: gi|351723661|ref|NP_001236263.1| (uncharacterized protein LOC100499804 [Glycine max])

HSP 1 Score: 181.0 bits (458), Expect = 8.7e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFR+KGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of CmoCh04G023270 vs. NCBI nr
Match: gi|700191201|gb|KGN46405.1| (hypothetical protein Csa_6G091290 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 8.7e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 60  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 119

Query: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 87
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 120 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of CmoCh04G023270 vs. NCBI nr
Match: gi|357446939|ref|XP_003593745.1| (40S ribosomal protein S27-1 [Medicago truncatula])

HSP 1 Score: 181.0 bits (458), Expect = 8.7e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFR+KGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRKKGD 86

The following BLAST results are available for this feature:

BLAST of CmoCh04G023270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS272_ARATH	1.6e-44	96.51	40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2	[more]
RS27_HORVU	7.3e-42	94.19	40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2	[more]
RS271_ARATH	1.6e-41	92.86	40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1	[more]
RS273_ARATH	2.1e-41	94.05	40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2	[more]
RS27_CHLRE	4.2e-37	84.88	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1	[more]

BLAST of CmoCh04G023270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JH67_JATCU	2.7e-43	100.00	40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1	[more]
B9RG16_RICCO	2.7e-43	100.00	40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1	[more]
A0A059CAJ6_EUCGR	2.7e-43	100.00	40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1	[more]
A0A0A0KTU2_CUCSA	2.7e-43	100.00	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1	[more]
A0A0K9QTH7_SPIOL	6.0e-43	98.84	40S ribosomal protein S27 OS=Spinacia oleracea GN=SOVF_029410 PE=3 SV=1	[more]

BLAST of CmoCh04G023270 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	8.9e-46	96.51	ribosomal protein S27	[more]
AT2G45710.1	9.2e-43	92.86	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	1.2e-42	94.05	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	5.8e-37	81.40	Zinc-binding ribosomal protein family protein	[more]

BLAST of CmoCh04G023270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|255543244\|ref\|XP_002512685.1\|	3.9e-43	100.00	PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]	[more]
gi\|1009143419\|ref\|XP_015889256.1\|	6.6e-43	98.84	PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba]	[more]
gi\|351723661\|ref\|NP_001236263.1\|	8.7e-43	98.84	uncharacterized protein LOC100499804 [Glycine max]	[more]
gi\|700191201\|gb\|KGN46405.1\|	8.7e-43	98.84	hypothetical protein Csa_6G091290 [Cucumis sativus]	[more]
gi\|357446939\|ref\|XP_003593745.1\|	8.7e-43	98.84	40S ribosomal protein S27-1 [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000592	Ribosomal_S27e
IPR011332	Ribosomal_zn-bd
IPR023407	Ribosomal protein S27e, zinc-binding domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0019643	reductive tricarboxylic acid cycle
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0006412	translation
biological_process	GO:0006096	glycolytic process
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0019427	acetyl-CoA biosynthetic process from acetate
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003987	acetate-CoA ligase activity
molecular_function	GO:0016208	AMP binding
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G023270.1	CmoCh04G023270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 46..84 score: 7.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 24..84 score: 16
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 1..86 score: 5.4
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 30..84 score: 2.0
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 38..70 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 30..84 score: 8.61
IPR023407	Ribosomal protein S27e, zinc-binding domain	GENE3D	G3DSA:2.20.25.100		coord: 30..84 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G023270	CmaCh15G008030	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G023270	CmaCh04G022270	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G023270	Cla009062	Watermelon (97103) v1	cmowmB707
CmoCh04G023270	Csa5G466870	Cucumber (Chinese Long) v2	cmocuB720
CmoCh04G023270	MELO3C005089	Melon (DHL92) v3.5.1	cmomeB625
CmoCh04G023270	ClCG01G007900	Watermelon (Charleston Gray)	cmowcgB636
CmoCh04G023270	CSPI05G15990	Wild cucumber (PI 183967)	cmocpiB728
CmoCh04G023270	Cp4.1LG13g05750	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G023270	Cp4.1LG01g19290	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G023270	MELO3C005089.2	Melon (DHL92) v3.6.1	cmomedB714
CmoCh04G023270	CsaV3_5G025010	Cucumber (Chinese Long) v3	cmocucB0852
CmoCh04G023270	Cla97C01G008250	Watermelon (97103) v2	cmowmbB676
CmoCh04G023270	Bhi12G000938	Wax gourd	cmowgoB0828
CmoCh04G023270	CsGy5G015700	Cucumber (Gy14) v2	cgybcmoB631
CmoCh04G023270	Carg01400	Silver-seed gourd	carcmoB1121
CmoCh04G023270	Carg17758	Silver-seed gourd	carcmoB0648

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G023270	CmoCh15G008300	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G023270	Wax gourd	cmowgoB0822
CmoCh04G023270	Bottle gourd (USVL1VR-Ls)	cmolsiB610