CmaCh04G022270 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G022270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	40S ribosomal protein S27
Location	Cma_Chr04 : 15527857 .. 15529153 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTTCTCATTCCTCTCCTACTCAGATTATTGTAGTGTAGAATCTTGTTTTTCGTTTCCGATCTGTTTGTTCGTAAAGTTGAATGTATTTCGGTATGTTTAAGCCTCGGAGTTTTACTTTAACCGTTTTGAGTTGTGGATTCATGGTTGTAGGAAGTGGATACGAGGAATCGATACAAATGAAACCTTTGTACACTAGAATTGTTGCGTTTTTTTTTTGTTTGTTATTTTTCAGATTTATTCTGTCGTATTTAGAATGCTTTGGGTGTTGCGAACGAAAATTTCATTAAGATTATAGAAAGATGTGTTTCATAATATGGGCGGCGAACGTTAAGAAACGTTTATCGAGATAGAATATTTTTCATTCCGCTACTCTGATGCACTGAATTTATATGAAATTCTTTTATTTTTGAATTTTGCGGGTGTTCTATTTTTATCTGATGTCCTCAAGTTATTTGGAATAGTTCTCTTTGTAAAACTGATGTCCGTTGAATAAAATCTTGCACTTGTGTTTGTAAATAGTTTCATATTTCTGTAGTGTACACATCACGTATGTTCTTAACAAACTTCTTCTAATTGAACGTCTCTTTCATGATTTTTTATATAAAACCCGCAAGTCGACTATTAAAGTCATATAAATGCATGTTCGAGCTGTTGGTATTAGACAAGTGTAATTATCAAAAAACTGCTTTGGATTCTCAAAGTTGGAGTTGATCAACTTAGATTTTTTTTATTTTTGTCAATAGGTTCTCCAAAACGATATTGATTTGCTGAATCCTCCCGCTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTGCAGTCGCCCAATTCCTTCTTCATGGTATACCTTTGATTTTATTTCAATTCCATGCCATTAATTCTATGCCCATCAATATTTTTTCTCGGGTTGGCGCTTCTTAGAAGCATACACATGCCAACCTGTTAACGTTTCTGCTTTTGCCTTGAATTATATGATGTTCTGACAAGCTTTGCCTTTCATTGTGTTTCGACTTGAAGGACGTTAAGTGCCAGGGATGCTTCAACATGTAAGTGCCATTCCTTTTCATTAGTTTGTTGTACTTTGCAAATTTTCTGGATTCTGCTTGAAGACGATGTGTATTGAACCCATCTGATTGTAGTTTTCTTTGATGATTTGCAGTACCACTGTCTTTAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACCGTCTTGTGCCAACCAACTGGAGGGCGTGCTAGACTCACCGAAGGGTGTTCTTTCAGGAGAAAGGGCGATTGA

mRNA sequence

ATGGTGAGTTCTCATTCCTCTCCTACTCAGATTATTATTTATTCTGTCTGTACACATCACGTTCTCCAAAACGATATTGATTTGCTGAATCCTCCCGCTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTGCAGTCGCCCAATTCCTTCTTCATGGACGTTAAGTGCCAGGGATGCTTCAACATTACCACTGTCTTTAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACCGTCTTGTGCCAACCAACTGGAGGGCGTGCTAGACTCACCGAAGGGTGTTCTTTCAGGAGAAAGGGCGATTGA

Coding sequence (CDS)

ATGGTGAGTTCTCATTCCTCTCCTACTCAGATTATTATTTATTCTGTCTGTACACATCACGTTCTCCAAAACGATATTGATTTGCTGAATCCTCCCGCTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTGCAGTCGCCCAATTCCTTCTTCATGGACGTTAAGTGCCAGGGATGCTTCAACATTACCACTGTCTTTAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACCGTCTTGTGCCAACCAACTGGAGGGCGTGCTAGACTCACCGAAGGGTGTTCTTTCAGGAGAAAGGGCGATTGA

Protein sequence

MVSSHSSPTQIIIYSVCTHHVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Homology

[Close]

BLAST of CmaCh04G022270 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 177.6 bits (449), Expect = 7.3e-44
Identity = 82/85 (96.47%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2   VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRKGD 106
           QT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 62  QTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh04G022270 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-41
Identity = 80/85 (94.12%), Postives = 81/85 (95.29%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  C
Sbjct: 2   VLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRKGD 106
           QTVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 62  QTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh04G022270 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.6e-41
Identity = 77/83 (92.77%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNC
Sbjct: 2   VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRK 104
           QT+LC PTGG+A+LTEGCSFR+K
Sbjct: 62  QTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of CmaCh04G022270 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 9.9e-41
Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2   VLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRK 104
           QTVLCQPTGG+ARL EGCSFR+K
Sbjct: 62  QTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of CmaCh04G022270 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-36
Identity = 72/85 (84.71%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C
Sbjct: 2   VLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRKGD 106
            +VLC PTG   RLTEGCSFRRK D
Sbjct: 62  SSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of CmaCh04G022270 vs. TrEMBL
Match: W9RJV2_9ROSA (40S ribosomal protein S27 OS=Morus notabilis GN=L484_005973 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.9e-43
Identity = 90/101 (89.11%), Postives = 92/101 (91.09%), Query Frame = 1


Query: 5   HSSPTQIIIYSVCTHHVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI 64
           HSSPT  I       +VLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNI
Sbjct: 107 HSSPT--IFRERKNENVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNI 166

Query: 65  TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 106
           TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 167 TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 205

[Close]

BLAST of CmaCh04G022270 vs. TrEMBL
Match: A0A0S3RW80_PHAAN (40S ribosomal protein S27 OS=Vigna angularis var. angularis GN=Vigan.04G232500 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.5e-43
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 15  SVCTHHVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTV 74
           SV   HVLQNDIDLLNPPAE+EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTV
Sbjct: 8   SVFPFHVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTV 67

Query: 75  VVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 106
           VVCGNCQTVLCQPTGGRARLTEGCSFR+KGD
Sbjct: 68  VVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 98

[Close]

BLAST of CmaCh04G022270 vs. TrEMBL
Match: A0A0A0K9G0_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.6e-43
Identity = 88/101 (87.13%), Postives = 92/101 (91.09%), Query Frame = 1


Query: 5   HSSPTQIIIYSVCTHHVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI 64
           H++P  +II       VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI
Sbjct: 51  HTAPLPLIIM------VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI 110

Query: 65  TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 106
           TTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 111 TTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of CmaCh04G022270 vs. TrEMBL
Match: A0A067JH67_JATCU (40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2   VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRKGD 106
           QTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 62  QTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh04G022270 vs. TrEMBL
Match: A0A0A0KTU2_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2   VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRKGD 106
           QTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 62  QTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh04G022270 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27)

HSP 1 Score: 177.6 bits (449), Expect = 4.1e-45
Identity = 82/85 (96.47%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2   VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRKGD 106
           QT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 62  QTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh04G022270 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 167.5 bits (423), Expect = 4.3e-42
Identity = 77/83 (92.77%), Postives = 82/83 (98.80%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNC
Sbjct: 2   VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRK 104
           QT+LC PTGG+A+LTEGCSFR+K
Sbjct: 62  QTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of CmaCh04G022270 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 167.2 bits (422), Expect = 5.6e-42
Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2   VLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRK 104
           QTVLCQPTGG+ARL EGCSFR+K
Sbjct: 62  QTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of CmaCh04G022270 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 148.3 bits (373), Expect = 2.7e-36
Identity = 69/85 (81.18%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG C
Sbjct: 2   VLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGKC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRKGD 106
           Q VLCQPTGG+A+LT GCSFR+  D
Sbjct: 62  QNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of CmaCh04G022270 vs. NCBI nr
Match: gi|703123838|ref|XP_010102910.1| (40S ribosomal protein S27-2 [Morus notabilis])

HSP 1 Score: 183.0 bits (463), Expect = 2.8e-43
Identity = 90/101 (89.11%), Postives = 92/101 (91.09%), Query Frame = 1


Query: 5   HSSPTQIIIYSVCTHHVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI 64
           HSSPT  I       +VLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNI
Sbjct: 107 HSSPT--IFRERKNENVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNI 166

Query: 65  TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 106
           TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 167 TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 205

[Close]

BLAST of CmaCh04G022270 vs. NCBI nr
Match: gi|965670253|dbj|BAT84860.1| (hypothetical protein VIGAN_04232500 [Vigna angularis var. angularis])

HSP 1 Score: 182.6 bits (462), Expect = 3.6e-43
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 15  SVCTHHVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTV 74
           SV   HVLQNDIDLLNPPAE+EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTV
Sbjct: 8   SVFPFHVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTV 67

Query: 75  VVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 106
           VVCGNCQTVLCQPTGGRARLTEGCSFR+KGD
Sbjct: 68  VVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 98

[Close]

BLAST of CmaCh04G022270 vs. NCBI nr
Match: gi|700191201|gb|KGN46405.1| (hypothetical protein Csa_6G091290 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 8.1e-43
Identity = 88/101 (87.13%), Postives = 92/101 (91.09%), Query Frame = 1


Query: 5   HSSPTQIIIYSVCTHHVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI 64
           H++P  +II       VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI
Sbjct: 51  HTAPLPLIIM------VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNI 110

Query: 65  TTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 106
           TTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 111 TTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of CmaCh04G022270 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis])

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2   VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRKGD 106
           QTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 62  QTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh04G022270 vs. NCBI nr
Match: gi|1009143419|ref|XP_015889256.1| (PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba])

HSP 1 Score: 179.5 bits (454), Expect = 3.1e-42
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 21  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 80
           VLQNDIDLLNPPAE+EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2   VLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 81  QTVLCQPTGGRARLTEGCSFRRKGD 106
           QTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 62  QTVLCQPTGGRARLTEGCSFRRKGD 86

The following BLAST results are available for this feature:

BLAST of CmaCh04G022270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS272_ARATH	7.3e-44	96.47	40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2	[more]
RS27_HORVU	3.4e-41	94.12	40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2	[more]
RS271_ARATH	7.6e-41	92.77	40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1	[more]
RS273_ARATH	9.9e-41	93.98	40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2	[more]
RS27_CHLRE	1.9e-36	84.71	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1	[more]

BLAST of CmaCh04G022270 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RJV2_9ROSA	1.9e-43	89.11	40S ribosomal protein S27 OS=Morus notabilis GN=L484_005973 PE=3 SV=1	[more]
A0A0S3RW80_PHAAN	2.5e-43	94.51	40S ribosomal protein S27 OS=Vigna angularis var. angularis GN=Vigan.04G232500 P...	[more]
A0A0A0K9G0_CUCSA	5.6e-43	87.13	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1	[more]
A0A067JH67_JATCU	1.3e-42	100.00	40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1	[more]
A0A0A0KTU2_CUCSA	1.3e-42	100.00	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1	[more]

BLAST of CmaCh04G022270 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	4.1e-45	96.47	ribosomal protein S27	[more]
AT2G45710.1	4.3e-42	92.77	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	5.6e-42	93.98	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	2.7e-36	81.18	Zinc-binding ribosomal protein family protein	[more]

BLAST of CmaCh04G022270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703123838\|ref\|XP_010102910.1\|	2.8e-43	89.11	40S ribosomal protein S27-2 [Morus notabilis]	[more]
gi\|965670253\|dbj\|BAT84860.1\|	3.6e-43	94.51	hypothetical protein VIGAN_04232500 [Vigna angularis var. angularis]	[more]
gi\|700191201\|gb\|KGN46405.1\|	8.1e-43	87.13	hypothetical protein Csa_6G091290 [Cucumis sativus]	[more]
gi\|255543244\|ref\|XP_002512685.1\|	1.8e-42	100.00	PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]	[more]
gi\|1009143419\|ref\|XP_015889256.1\|	3.1e-42	98.82	PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000592	Ribosomal_S27e
IPR011332	Ribosomal_zn-bd
IPR023407	Ribosomal protein S27e, zinc-binding domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0019643	reductive tricarboxylic acid cycle
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0006412	translation
biological_process	GO:0006096	glycolytic process
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0019427	acetyl-CoA biosynthetic process from acetate
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003987	acetate-CoA ligase activity
molecular_function	GO:0016208	AMP binding
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G022270.1	CmaCh04G022270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 65..103 score: 5.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 43..103 score: 16
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 21..105 score: 1.1
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 49..103 score: 3.6
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 57..89 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 49..103 score: 1.54
IPR023407	Ribosomal protein S27e, zinc-binding domain	GENE3D	G3DSA:2.20.25.100		coord: 49..103 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G022270	Cucsa.033680	Cucumber (Gy14) v1	cgycmaB0015
CmaCh04G022270	Cla009062	Watermelon (97103) v1	cmawmB711
CmaCh04G022270	Csa5G466870	Cucumber (Chinese Long) v2	cmacuB728
CmaCh04G022270	MELO3C005089	Melon (DHL92) v3.5.1	cmameB635
CmaCh04G022270	ClCG01G007900	Watermelon (Charleston Gray)	cmawcgB634
CmaCh04G022270	CSPI05G15990	Wild cucumber (PI 183967)	cmacpiB735
CmaCh04G022270	CmoCh04G023270	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G022270	CmoCh15G008300	Cucurbita moschata (Rifu)	cmacmoB693
CmaCh04G022270	Cp4.1LG01g19290	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G022270	Cp4.1LG13g05750	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G022270	MELO3C005089.2	Melon (DHL92) v3.6.1	cmamedB721
CmaCh04G022270	CsaV3_5G025010	Cucumber (Chinese Long) v3	cmacucB0865
CmaCh04G022270	Cla97C01G008250	Watermelon (97103) v2	cmawmbB705
CmaCh04G022270	Bhi12G000938	Wax gourd	cmawgoB0831
CmaCh04G022270	CsGy5G015700	Cucumber (Gy14) v2	cgybcmaB651
CmaCh04G022270	Carg01400	Silver-seed gourd	carcmaB1150
CmaCh04G022270	Carg17758	Silver-seed gourd	carcmaB0665

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G022270	CmaCh15G008030	Cucurbita maxima (Rimu)	cmacmaB325

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G022270	Wax gourd	cmawgoB0827
CmaCh04G022270	Bottle gourd (USVL1VR-Ls)	cmalsiB622