Carg17758 (gene) Silver-seed gourd

Overview
NameCarg17758
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S27
LocationCucurbita_argyrosperma_scaffold_082 : 416680 .. 418344 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATATAAAAATGAGGTTTTAGGGTTCTTGCTCCCTCCCTCTGCTGCGATCGTGCGCTTCTCTCTATAGGCCTCGCAGGATTTTCTTCTTTCACCGGTGTTCGTTCGAGATTTTTCCAAGATGGTGAGTTCTCATTCGTCTCCTACTCAGATTATTGTAGTGTAGAATCTTGTTTTTCGTTTCGGATCTGTTTGTTCGTAAAGGTGAATGTATTTTGGTGTGTTTAAGCCTCGGAGTTTTATTTGAAACGTTTTGAGTTGTGGATTCATGGTTGTAGGAAGAGGATACGAAGAATCGATACAAATGAAACCTCTGTATACTAGAATTTTTGCGTTTTTTTTTTTTTTGTTATTTTTCAGATTTGTTCTGTCGTATTTAGAATTCTTTGGGTTTTGCGAACGAAAAATGCATTAAGATTATAGAAAGATGTGTTTCATAATATGAGCGGAGAACGCTAAGAAATGTTTATCGAGATAGTGTAAAAAATATTTTTCATTCCGCTACTCTGATGTACTGAATTCTATGAAATTCATTTATTTTTTAAATTTGCGGGGGTTTTATTTTTATCTGATGTCCTCAAGTTATTTGGAATAGATTTCTTTGTATAACTGGTGTCCGTTGAATGGAATCTTGCTCTCGTGTTTGTAAAGAGTTTCATATTTCTGTAGTGTACACATCACGTATGTCCTTAACAAACTTCTGCTACTTGAACGTCTCTTTCATGATTTTTTTTTTATATAAAACCCGCAAGTCGAGTATTAAAGTCATATTAATGCATGTTCGAACTATTGGTATTAGCCAAGTGTAATGATAAAAAAATACTGCTTTGGATTCTCAAATTGGAGTTGATCAACTTGGATTTTTATTTTTTTTATTTTTGACAATAGGTTCTCCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTGCAGTCGCCCAATTCCTTCTTCATGGTATACCTTCGATTTTATTTCAATTCCATACCATTATTTCTATGCCCATTTACTTTTTTTTTTCTCGGGAAGGCGCTTATTAGAAGCATACACATGCCAACCTGTTAACATTTCTGCTATTTCCTTGAATTATATGTTGTTCTGACAAGTTTTGCCTTTCATTGTGTATCGGCTTGAAGGACGTCAAGTGCCAGGGATGCTTTAACATGTAAGTGCCTTCCTTTTCATTAGTTCGTTCTTACTCTGCAAATTTTCTGGATTCTGATCGAAGATATTGTGTTGAACCCGTCTGATTGTAGTTTTCTTTGATGATATGCAGTACCACTGTCTTTAGCCACTCTCAAACTGTTGTGGTATGCGGGAACTGCCAGACCGTCTTGTGCCAACCAACTGGAGGGCGTGCTAGACTCACCGAAGGGTGTTCTTTCAGGAGAAAGGGCGATTGATTGATTGATGATGAAGATGATGAGGTTCCTTGTTTCTTTTTGATGGAAGAAGACGCTGTCTCTGTTTTGATCATGGTATATTTATTTTTCTTGTACGGTACCAGACTTGATTGTGCTCTCACTCTCCTCAATAGATTATATTTGGCTTTTTAGAGTTATGGCTTTGTTTAAAAGAAGAATTTTATGTACTGAACTGTTAGTTTCATTTAGTAAAGTTTAGATTTCTTTC

mRNA sequence

TATATATAAAAATGAGGTTTTAGGGTTCTTGCTCCCTCCCTCTGCTGCGATCGTGCGCTTCTCTCTATAGGCCTCGCAGGATTTTCTTCTTTCACCGGTGTTCGTTCGAGATTTTTCCAAGATGGTTCTCCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTGCAGTCGCCCAATTCCTTCTTCATGGACGTCAAGTGCCAGGGATGCTTTAACATTACCACTGTCTTTAGCCACTCTCAAACTGTTGTGGTATGCGGGAACTGCCAGACCGTCTTGTGCCAACCAACTGGAGGGCGTGCTAGACTCACCGAAGGGTGTTCTTTCAGGAGAAAGGGCGATTGATTGATTGATGATGAAGATGATGAGGTTCCTTGTTTCTTTTTGATGGAAGAAGACGCTGTCTCTGTTTTGATCATGGTATATTTATTTTTCTTGTACGGTACCAGACTTGATTGTGCTCTCACTCTCCTCAATAGATTATATTTGGCTTTTTAGAGTTATGGCTTTGTTTAAAAGAAGAATTTTATGTACTGAACTGTTAGTTTCATTTAGTAAAGTTTAGATTTCTTTC

Coding sequence (CDS)

ATGGTTCTCCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTTGAGAAGAGGAAACACAAGCTCAAGCGTCTTGTGCAGTCGCCCAATTCCTTCTTCATGGACGTCAAGTGCCAGGGATGCTTTAACATTACCACTGTCTTTAGCCACTCTCAAACTGTTGTGGTATGCGGGAACTGCCAGACCGTCTTGTGCCAACCAACTGGAGGGCGTGCTAGACTCACCGAAGGGTGTTCTTTCAGGAGAAAGGGCGATTGA

Protein sequence

MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Homology
[Close]
BLAST of Carg17758 vs. NCBI nr
Match: XP_022953224.1 (uncharacterized protein LOC111455834 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 7.6e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 124 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 183

Query: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 87
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 184 CQTVLCQPTGGRARLTEGCSFRRKGD 209

[Close]
BLAST of Carg17758 vs. NCBI nr
Match: XP_022991567.1 (40S ribosomal protein S27-2-like [Cucurbita maxima])

HSP 1 Score: 182.2 bits (461), Expect = 7.6e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 64  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 123

Query: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 87
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 124 CQTVLCQPTGGRARLTEGCSFRRKGD 149

[Close]
BLAST of Carg17758 vs. NCBI nr
Match: XP_002512685.1 (40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal protein S27-2 [Ricinus communis] >XP_004143769.1 PREDICTED: 40S ribosomal protein S27-2 [Cucumis sativus] >XP_008465377.1 PREDICTED: 40S ribosomal protein S27-2-like [Cucumis melo] >XP_010057712.1 PREDICTED: 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_010028919.1 PREDICTED: 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_012078870.1 40S ribosomal protein S27-2 [Jatropha curcas] >XP_012088691.1 40S ribosomal protein S27-2 [Jatropha curcas] >XP_018829355.1 PREDICTED: 40S ribosomal protein S27-2 [Juglans regia] >XP_021680473.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_021660002.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_022141357.1 40S ribosomal protein S27-2 [Momordica charantia] >XP_022952540.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022939288.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022990942.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_022993712.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_023524061.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023548719.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023549571.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023872417.1 40S ribosomal protein S27-2 [Quercus suber] >EEF43018.1 40S ribosomal protein S27, putative [Ricinus communis] >EEF50137.1 40S ribosomal protein S27, putative [Ricinus communis] >KCW74930.1 hypothetical protein EUGRSUZ_E03676 [Eucalyptus grandis] >KDP23246.1 hypothetical protein JCGZ_23079 [Jatropha curcas] >KGN51141.1 hypothetical protein Csa_5G466870 [Cucumis sativus] >POE85865.1 40s ribosomal protein s27-2 [Quercus suber])

HSP 1 Score: 182.2 bits (461), Expect = 7.6e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Carg17758 vs. NCBI nr
Match: XP_015889256.1 (40S ribosomal protein S27-2 [Ziziphus jujuba] >XP_015893897.1 40S ribosomal protein S27-2 [Ziziphus jujuba] >XP_015893898.1 40S ribosomal protein S27-2 [Ziziphus jujuba] >XP_021614940.1 40S ribosomal protein S27-2 [Manihot esculenta] >XP_021619444.1 40S ribosomal protein S27-2 [Manihot esculenta] >OAY43810.1 hypothetical protein MANES_08G100000 [Manihot esculenta] >OAY46661.1 hypothetical protein MANES_06G017200 [Manihot esculenta])

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAE+EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Carg17758 vs. NCBI nr
Match: XP_021623458.1 (40S ribosomal protein S27-2-like [Manihot esculenta] >OAY42355.1 hypothetical protein MANES_09G173400 [Manihot esculenta])

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAE+EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAEMEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Carg17758 vs. TAIR10
Match: AT3G61110.1 (ribosomal protein S27)

HSP 1 Score: 179.5 bits (454), Expect = 8.9e-46
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]
BLAST of Carg17758 vs. TAIR10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 169.5 bits (428), Expect = 9.2e-43
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRK 85
          CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]
BLAST of Carg17758 vs. TAIR10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-42
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRK 85
          CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]
BLAST of Carg17758 vs. TAIR10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 150.2 bits (378), Expect = 5.8e-37
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQ VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61 CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]
BLAST of Carg17758 vs. Swiss-Prot
Match: sp|Q9M2F1|RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-44
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]
BLAST of Carg17758 vs. Swiss-Prot
Match: sp|Q96564|RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 7.4e-42
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]
BLAST of Carg17758 vs. Swiss-Prot
Match: sp|O64650|RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-41
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRK 85
          CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]
BLAST of Carg17758 vs. Swiss-Prot
Match: sp|Q8L953|RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-41
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRK 85
          CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]
BLAST of Carg17758 vs. Swiss-Prot
Match: sp|P47903|RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.2e-37
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          C +VLC PTG   RLTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]
BLAST of Carg17758 vs. TrEMBL
Match: tr|B9RG16|B9RG16_RICCO (40S ribosomal protein S27 OS=Ricinus communis OX=3988 GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Carg17758 vs. TrEMBL
Match: tr|A0A2N9FBT7|A0A2N9FBT7_FAGSY (40S ribosomal protein S27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12181 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Carg17758 vs. TrEMBL
Match: tr|A0A2I4FCH2|A0A2I4FCH2_9ROSI (40S ribosomal protein S27 OS=Juglans regia OX=51240 GN=LOC108997487 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Carg17758 vs. TrEMBL
Match: tr|A0A1S3CNQ7|A0A1S3CNQ7_CUCME (40S ribosomal protein S27 OS=Cucumis melo OX=3656 GN=LOC103503011 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Carg17758 vs. TrEMBL
Match: tr|A0A059CAJ6|A0A059CAJ6_EUCGR (40S ribosomal protein S27 OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E03676 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 87
          CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

The following BLAST results are available for this feature:
BLAST of Carg17758 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022953224.17.6e-43100.00uncharacterized protein LOC111455834 [Cucurbita moschata][more]
XP_022991567.17.6e-43100.0040S ribosomal protein S27-2-like [Cucurbita maxima][more]
XP_002512685.17.6e-43100.0040S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal pro... [more]
XP_015889256.11.3e-4298.8440S ribosomal protein S27-2 [Ziziphus jujuba] >XP_015893897.1 40S ribosomal prot... [more]
XP_021623458.11.3e-4298.8440S ribosomal protein S27-2-like [Manihot esculenta] >OAY42355.1 hypothetical pr... [more]
BLAST of Carg17758 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61110.18.9e-4696.51ribosomal protein S27[more]
AT2G45710.19.2e-4392.86Zinc-binding ribosomal protein family protein[more]
AT5G47930.11.2e-4294.05Zinc-binding ribosomal protein family protein[more]
AT3G61111.15.8e-3781.40Zinc-binding ribosomal protein family protein[more]
BLAST of Carg17758 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M2F1|RS272_ARATH1.6e-4496.5140S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2[more]
sp|Q96564|RS27_HORVU7.4e-4294.1940S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2[more]
sp|O64650|RS271_ARATH1.7e-4192.8640S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1[more]
sp|Q8L953|RS273_ARATH2.2e-4194.0540S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2[more]
sp|P47903|RS27_CHLRE4.2e-3784.8840S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=... [more]
BLAST of Carg17758 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|B9RG16|B9RG16_RICCO5.0e-43100.0040S ribosomal protein S27 OS=Ricinus communis OX=3988 GN=RCOM_1300070 PE=3 SV=1[more]
tr|A0A2N9FBT7|A0A2N9FBT7_FAGSY5.0e-43100.0040S ribosomal protein S27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12181 PE=3 SV=... [more]
tr|A0A2I4FCH2|A0A2I4FCH2_9ROSI5.0e-43100.0040S ribosomal protein S27 OS=Juglans regia OX=51240 GN=LOC108997487 PE=3 SV=1[more]
tr|A0A1S3CNQ7|A0A1S3CNQ7_CUCME5.0e-43100.0040S ribosomal protein S27 OS=Cucumis melo OX=3656 GN=LOC103503011 PE=3 SV=1[more]
tr|A0A059CAJ6|A0A059CAJ6_EUCGR5.0e-43100.0040S ribosomal protein S27 OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E03676 PE=3 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR000592Ribosomal_S27e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17758-RACarg17758-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.20.25.640coord: 3..85
e-value: 2.1E-48
score: 164.2
NoneNo IPR availablePANTHERPTHR11594:SF040S RIBOSOMAL PROTEIN S27coord: 1..85
IPR000592Ribosomal protein S27ePFAMPF01667Ribosomal_S27ecoord: 30..84
e-value: 2.1E-27
score: 94.5
IPR000592Ribosomal protein S27ePANTHERPTHR1159440S RIBOSOMAL PROTEIN S27coord: 1..85
IPR000592Ribosomal protein S27ePROSITEPS01168RIBOSOMAL_S27Ecoord: 38..70
IPR000592Ribosomal protein S27ePRODOMPD004466coord: 46..84
e-value: 7.0E-16
score: 199.0
IPR000592Ribosomal protein S27eHAMAPMF_00371Ribosomal_S27ecoord: 24..84
score: 16.744
IPR011332Zinc-binding ribosomal proteinSUPERFAMILYSSF57829Zn-binding ribosomal proteinscoord: 30..84