MELO3C005089.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005089.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	40S ribosomal protein S27
Location	chr09 : 16938305 .. 16940151 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGGGTTCTTACTCTCTTCTTCTGCGGTCGTGAGCTTTTTTCGTTGGCTTTGCAGGATTTCCCTCCCTTCTTTCGCCGACTACTTTCCAGTTTTTTTCAAGATGGTGAGTTCTCATTCCTCTTCTACTCGATTTATTCTATTCTGTTTTTCGTTTTGGATCTGTTCGTTCCCATGTTTTTTCTACCGAATTGTATGAATAAACAGTTTAATGTATTTAGGTGTATTTTAAGCTCTGGGTTCTTCACTCTTATACTCTCTTAATTGATGGATTTTTATTTTGGTAGAAGAATTGATACATTTGAATCCTTTGTTTACATTTAAAGTTATGGTTGTCTTTTTGGGTTTTTTGTTTTTCGATTTAATTTTGCTTTGAAGGATTGTTTGATGATTGAGAATCATGTGAATGATATTTTCGGAGATGGGTATTGTAGGAAATTAGTGGCGGACCATGTTTTATAACGTGGGTTGAGAATAAAGGGATTCTTGATTCTTGTTTCATTCTCCAATTTTTAAATAAAAAGCTGGAACCCTGCAGTGAAATTTGAATGGAATTATGCACAAAACTTTGCACGGTGCACTGAAGCTATTTAACCGTCTTCATTTTTGCTTTTGCATTTTTTTTTCAATTTTCTGCTGTTTTATGTTATAGTTGGATTCCTGAAATTGAAGAATTATTTTGTTCTGATGATAATACTATAATTCTCTTTATTTTAACCTTTTTTTCCCATATTTTTGTGGAGTACATACGACTTGCCACTTGAACGTATTTCTTTATCTCCTTAACATGTTTGAATTTTTCTTGAAAAAACAAAAAGTCGAACATTGAAGTTATTCACATTCAAACACATGCTGGCGCTTATTGATTTCTGAGAATTGCAAACAAATGGAATGTTCTTAATCGTGTTCAGGCTTCCAGTGTAGCAGATATTGTTTGCTGATTTTGTTGTTTTGCTATACTCCCTTTCTTATTAATTTAATCTTAGTTTTTGTTCCAATGTCTGGCCTTGAAAAGGGGTATCGGGTTGTTAACTCTGGAGTTGCTCAAATGGGATGTTTTGTTTTTGTATCTACAGGTTCTTCAAAACGATATTGATTTACTGAATCCTCCTGCTGAGTTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGTATTCTTTTGCTTCTATTTCCTTTCCATGCCATTTATTGTGACTGTTCAAATTTTGCACATCAATCTAGTGTCCTATCACCAAGTTTTCTTTGTTCAGTAGTTTATATTTCTGCTCTTGACTTGAATTCTATAATATTATGAGACCCTTACAATACTGCTTTAATTGTCATATGTTGACGATTTGAAGGACGTCAAGTGCCAAGGATGCTTCAACATGTAAGTTCCATCCCTCATCACTAGTTTGATATATTTGCAACTTTTTTGGATTCTGCTAGAAGATTATTGAAATTTCTGATGATTGTTTTTGTCAACAAAATGCAGTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACAGTCCTATGCCAGCCAACGGGAGGACGTGCTAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGATGATGCGGTTCTTTGTTTCATTTTGCTGGGAAGAAATTGCAAGTCTCTGTTTTGATCGATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTAGAGTTATCTGGTTTTGTTTAAAAGATGAATTTCGTGTACTGAACTTTTAGCTGCATTTAGTAAAAGCTTAACTTTCTTTTATCCA

mRNA sequence

TTAGGGTTCTTACTCTCTTCTTCTGCGGTCGTGAGCTTTTTTCGTTGGCTTTGCAGGATTTCCCTCCCTTCTTTCGCCGACTACTTTCCAGTTTTTTTCAAGATGGTTCTTCAAAACGATATTGATTTACTGAATCCTCCTGCTGAGTTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGACGTCAAGTGCCAAGGATGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACAGTCCTATGCCAGCCAACGGGAGGACGTGCTAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGATGATGCGGTTCTTTGTTTCATTTTGCTGGGAAGAAATTGCAAGTCTCTGTTTTGATCGATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTAGAGTTATCTGGTTTTGTTTAAAAGATGAATTTCGTGTACTGAACTTTTAGCTGCATTTAGTAAAAGCTTAACTTTCTTTTATCCA

Coding sequence (CDS)

TTAGGGTTCTTACTCTCTTCTTCTGCGGTCGTGAGCTTTTTTCGTTGGCTTTGCAGGATTTCCCTCCCTTCTTTCGCCGACTACTTTCCAGTTTTTTTCAAGATGGTTCTTCAAAACGATATTGATTTACTGAATCCTCCTGCTGAGTTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGACGTCAAGTGCCAAGGATGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACAGTCCTATGCCAGCCAACGGGAGGACGTGCTAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGA

Protein sequence

LGFLLSSSAVVSFFRWLCRISLPSFADYFPVFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Homology

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BLAST of MELO3C005089.2 vs. NCBI nr
Match: XP_010926238.2 (PREDICTED: 40S ribosomal protein S27-2 [Elaeis guineensis])

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 96/121 (79.34%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   LGFLLSSSAVVSFFRWLCRISLPSFADYFPV-FFKMVLQNDIDLLNPPAELEKRKHKLKR 60
           LGF  S S +VS  +   + SLPS     P+ F++MVL NDIDLLNPPAELEK++HKLKR
Sbjct: 25  LGFYPSPSLLVSLPQLRFQGSLPS----DPITFYEMVLPNDIDLLNPPAELEKKRHKLKR 84

Query: 61  LVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKG 120
           LVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKG
Sbjct: 85  LVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKG 141

[Close]

BLAST of MELO3C005089.2 vs. NCBI nr
Match: EOA24972.1 (hypothetical protein CARUB_v10018269mg, partial [Capsella rubella])

HSP 1 Score: 183.0 bits (463), Expect = 6.2e-43
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 34  KMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG 93
           KMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG
Sbjct: 29  KMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG 88

Query: 94  NCQTVLCQPTGGRARLTEGCSFRRKGD 121
           NCQT+LCQPTGG+ARLTEGCSFRRKGD
Sbjct: 89  NCQTILCQPTGGKARLTEGCSFRRKGD 115

[Close]

BLAST of MELO3C005089.2 vs. NCBI nr
Match: XP_022953224.1 (uncharacterized protein LOC111455834 [Cucurbita moschata])

HSP 1 Score: 182.6 bits (462), Expect = 8.1e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 124 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 183

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 184 CQTVLCQPTGGRARLTEGCSFRRKGD 209

[Close]

BLAST of MELO3C005089.2 vs. NCBI nr
Match: XP_022991567.1 (40S ribosomal protein S27-2-like [Cucurbita maxima])

HSP 1 Score: 182.6 bits (462), Expect = 8.1e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 64  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 123

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 124 CQTVLCQPTGGRARLTEGCSFRRKGD 149

[Close]

BLAST of MELO3C005089.2 vs. NCBI nr
Match: XP_002512685.1 (40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal protein S27-2 [Ricinus communis] >XP_004143769.1 PREDICTED: 40S ribosomal protein S27-2 [Cucumis sativus] >XP_008465377.1 PREDICTED: 40S ribosomal protein S27-2-like [Cucumis melo] >XP_010057712.1 PREDICTED: 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_010028919.1 PREDICTED: 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_012078870.1 40S ribosomal protein S27-2 [Jatropha curcas] >XP_012088691.1 40S ribosomal protein S27-2 [Jatropha curcas] >XP_018829355.1 PREDICTED: 40S ribosomal protein S27-2 [Juglans regia] >XP_021680473.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_021660002.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_022141357.1 40S ribosomal protein S27-2 [Momordica charantia] >XP_022952540.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022939288.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022990942.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_022993712.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_023524061.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023548719.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023549571.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023872417.1 40S ribosomal protein S27-2 [Quercus suber] >EEF43018.1 40S ribosomal protein S27, putative [Ricinus communis] >EEF50137.1 40S ribosomal protein S27, putative [Ricinus communis] >KCW74930.1 hypothetical protein EUGRSUZ_E03676 [Eucalyptus grandis] >KDP23246.1 hypothetical protein JCGZ_23079 [Jatropha curcas] >KGN51141.1 hypothetical protein Csa_5G466870 [Cucumis sativus] >POE85865.1 40s ribosomal protein s27-2 [Quercus suber])

HSP 1 Score: 182.6 bits (462), Expect = 8.1e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089.2 vs. TAIR10
Match: AT3G61110.1 (ribosomal protein S27)

HSP 1 Score: 179.9 bits (455), Expect = 9.5e-46
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089.2 vs. TAIR10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 169.9 bits (429), Expect = 9.8e-43
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRK 119
           CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of MELO3C005089.2 vs. TAIR10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-42
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRK 119
           CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of MELO3C005089.2 vs. TAIR10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 150.6 bits (379), Expect = 6.2e-37
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           CQ VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61  CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of MELO3C005089.2 vs. Swiss-Prot
Match: sp|Q9M2F1|RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 1.7e-44
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089.2 vs. Swiss-Prot
Match: sp|Q96564|RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 7.9e-42
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1   MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           CQTVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089.2 vs. Swiss-Prot
Match: sp|O64650|RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-41
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRK 119
           CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of MELO3C005089.2 vs. Swiss-Prot
Match: sp|Q8L953|RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 2.3e-41
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRK 119
           CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of MELO3C005089.2 vs. Swiss-Prot
Match: sp|P47903|RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.5e-37
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1   MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           C +VLC PTG   RLTEGCSFRRK D
Sbjct: 61  CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of MELO3C005089.2 vs. TrEMBL
Match: tr|M0TJU4|M0TJU4_MUSAM (40S ribosomal protein S27 OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.2e-44
Identity = 90/105 (85.71%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 16  WLCRISLPSFADYFPVFFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQG 75
           WL    LP F     V  KMVL ND+DLLNPPAELEKR+HKLKRLVQSPNSFFMDVKCQG
Sbjct: 76  WLPLTGLPRFRRAPKVSTKMVLPNDVDLLNPPAELEKRRHKLKRLVQSPNSFFMDVKCQG 135

Query: 76  CFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 121
           CFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 136 CFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 180

[Close]

BLAST of MELO3C005089.2 vs. TrEMBL
Match: tr|R0FQY1|R0FQY1_9BRAS (40S ribosomal protein S27 (Fragment) OS=Capsella rubella OX=81985 GN=CARUB_v10018269mg PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.1e-43
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 34  KMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG 93
           KMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG
Sbjct: 29  KMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG 88

Query: 94  NCQTVLCQPTGGRARLTEGCSFRRKGD 121
           NCQT+LCQPTGG+ARLTEGCSFRRKGD
Sbjct: 89  NCQTILCQPTGGKARLTEGCSFRRKGD 115

[Close]

BLAST of MELO3C005089.2 vs. TrEMBL
Match: tr|B9RG16|B9RG16_RICCO (40S ribosomal protein S27 OS=Ricinus communis OX=3988 GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089.2 vs. TrEMBL
Match: tr|A0A2N9FBT7|A0A2N9FBT7_FAGSY (40S ribosomal protein S27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12181 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089.2 vs. TrEMBL
Match: tr|A0A2I4FCH2|A0A2I4FCH2_9ROSI (40S ribosomal protein S27 OS=Juglans regia OX=51240 GN=LOC108997487 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 35  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 94
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 95  CQTVLCQPTGGRARLTEGCSFRRKGD 121
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

The following BLAST results are available for this feature:

BLAST of MELO3C005089.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010926238.2	1.6e-43	79.34	PREDICTED: 40S ribosomal protein S27-2 [Elaeis guineensis]	[more]
EOA24972.1	6.2e-43	97.70	hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]	[more]
XP_022953224.1	8.1e-43	100.00	uncharacterized protein LOC111455834 [Cucurbita moschata]	[more]
XP_022991567.1	8.1e-43	100.00	40S ribosomal protein S27-2-like [Cucurbita maxima]	[more]
XP_002512685.1	8.1e-43	100.00	40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal pro...	[more]

BLAST of MELO3C005089.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	9.5e-46	96.51	ribosomal protein S27	[more]
AT2G45710.1	9.8e-43	92.86	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	1.3e-42	94.05	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	6.2e-37	81.40	Zinc-binding ribosomal protein family protein	[more]

BLAST of MELO3C005089.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M2F1\|RS272_ARATH	1.7e-44	96.51	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
sp\|Q96564\|RS27_HORVU	7.9e-42	94.19	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
sp\|O64650\|RS271_ARATH	1.8e-41	92.86	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
sp\|Q8L953\|RS273_ARATH	2.3e-41	94.05	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
sp\|P47903\|RS27_CHLRE	4.5e-37	84.88	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

BLAST of MELO3C005089.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M0TJU4\|M0TJU4_MUSAM	8.2e-44	85.71	40S ribosomal protein S27 OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV...	[more]
tr\|R0FQY1\|R0FQY1_9BRAS	4.1e-43	97.70	40S ribosomal protein S27 (Fragment) OS=Capsella rubella OX=81985 GN=CARUB_v1001...	[more]
tr\|B9RG16\|B9RG16_RICCO	5.3e-43	100.00	40S ribosomal protein S27 OS=Ricinus communis OX=3988 GN=RCOM_1300070 PE=3 SV=1	[more]
tr\|A0A2N9FBT7\|A0A2N9FBT7_FAGSY	5.3e-43	100.00	40S ribosomal protein S27 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12181 PE=3 SV=...	[more]
tr\|A0A2I4FCH2\|A0A2I4FCH2_9ROSI	5.3e-43	100.00	40S ribosomal protein S27 OS=Juglans regia OX=51240 GN=LOC108997487 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR011332	Ribosomal_zn-bd
IPR000592	Ribosomal_S27e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0019643	reductive tricarboxylic acid cycle
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0019427	acetyl-CoA biosynthetic process from acetate
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003987	acetate-CoA ligase activity
molecular_function	GO:0016208	AMP binding
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005089.2.1	MELO3C005089.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 64..118 e-value: 5.1E-27 score: 93.2
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 35..119
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 72..104
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 80..118 e-value: 6.0E-16 score: 199.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 58..118 score: 16.744
None	No IPR available	GENE3D	G3DSA:2.20.25.640		coord: 37..119 e-value: 6.7E-48 score: 162.6
None	No IPR available	PANTHER	PTHR11594:SF0	40S RIBOSOMAL PROTEIN S27	coord: 35..119
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	SSF57829	Zn-binding ribosomal proteins	coord: 64..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005089.2	Csa5G466870	Cucumber (Chinese Long) v2	cumedB341
MELO3C005089.2	CSPI05G15990	Wild cucumber (PI 183967)	cpimedB343
MELO3C005089.2	Cucsa.033680	Cucumber (Gy14) v1	cgymedB007
MELO3C005089.2	CmaCh15G008030	Cucurbita maxima (Rimu)	cmamedB286
MELO3C005089.2	CmaCh04G022270	Cucurbita maxima (Rimu)	cmamedB721
MELO3C005089.2	CmoCh04G023270	Cucurbita moschata (Rifu)	cmomedB714
MELO3C005089.2	CmoCh15G008300	Cucurbita moschata (Rifu)	cmomedB272
MELO3C005089.2	Cp4.1LG01g19290	Cucurbita pepo (Zucchini)	cpemedB419
MELO3C005089.2	Cp4.1LG13g05750	Cucurbita pepo (Zucchini)	cpemedB184
MELO3C005089.2	CsGy5G015700	Cucumber (Gy14) v2	cgybmedB303
MELO3C005089.2	Cla009062	Watermelon (97103) v1	medwmB031
MELO3C005089.2	ClCG01G007900	Watermelon (Charleston Gray)	medwcgB018
MELO3C005089.2	Cla97C01G008250	Watermelon (97103) v2	medwmbB008
MELO3C005089.2	Bhi12G000938	Wax gourd	medwgoB003
MELO3C005089.2	Carg01400	Silver-seed gourd	carmedB0832
MELO3C005089.2	Carg17758	Silver-seed gourd	carmedB0487
MELO3C005089.2	CsaV3_5G025010	Cucumber (Chinese Long) v3	cucmedB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005089.2	Bottle gourd (USVL1VR-Ls)	lsimedB014