ClCG01G007900 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATATAAAGATTGAGGTTTTAGGGTTCTTGCTCTCTCGCTCTGCTGCGGTCGTGTGCTACTTTCGATTGGCTTCGCAGGATTTCCCTTCCCTCTTTCGCCGGCTCTTTTCCAGATTTTTTCAAGATGGTGAGTTCTCATTCCTCTCCTACTCGATTTATTGTGTTGTGTTTCCCGTTTCGGATCTGTTCTTTTCCATGTTTGTTTATCGAGAATTGTATTGCTGCTAAGTTTAATGTATTTAGATGTATTTTAGCCTCCGGGTTTTTGTTTGAGACACTTTGGAATGTATGGATTCATATTTGTAGAAAGAAGATGGAATATTGATACATTTGAAACCTTTGTTTACAGTAAAAGTTATGGTTGTCTTTCTGGGTTTTTTTCGATTTAATTTTGCGTTGAAGAAAGATTTGATGGTTGAGAATCATGAGGACGATATTTTGGGAGATGGGTTTGGTAGGAAGTTAGCGGAAGATTATGCTTTATAACATGGGTCGAGAATAAAGGGGATTGTTTTTCATTCTGCAATTTTTAGAGAAAAACTTTGTACCTGCAGTAAATTGAGTGGAACCATGTGACTTGAACGTATTTTCTATATGTCCTTGGCAAGTTTGAATGTTTCTTGAAAAAACAAAAAGTCAAACACTAAGTTATTCTCGTTCAAACACATGTTGGAGCGTATTGATCTCTGAGAAGTGAAAAACCAGTGGAATGCTCTTAATTGTGTTCATACTTCTCAGTTAATTTTTTGCTGATTTTGTTGATGTGTTGTACCCCATTTCTTATCAATTCAATGTTGTTTGTTTTTGCTGCAATTTTTGTGGCCTTAAAAAGGTGTATCAAATTCTTAATTCTGAAGTTGTTCAATTTGTTTTTGTATCAACAGGTTCTACAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCATTCTTCATGGTATTCTTTTGCTTCTATTTCAATTGTATGTCGTTTGTTATGATCAACTTGTCAAATTTAGCACATCTCTCTACTGTCCTGTCATCAAGTTTTCTTGGCTCAGCAGTTAATGTTTCTGCTTTTGTCTTGATTTATATAATATTCTGAGTCTCTGACAAGTCTATACTTTAATTGTGTATGTTGGCTATTTGTAGGACGTAAAGTGCCAGGGATGCTTCAACATGTAAGTTCCATCCCTTATCAGTTTGTTATATTTGTAACTCTTCTGGATTCTGCTTGAAGATGTTGTATGTTGAAATTTCTGATTGTTGTTTTCTGTCAATGAAATGCAGTACCACAGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACGGTCTTATGCCAGCCGACGGGAGGACGTGCTAGACTCACCGAAGGTTGCTCTTTTAGGAGAAAGGGTGATTGATGATGCGGTTCCTTGTTTCTTTTTGCTGGGAAGAAATTGCAGTCTCTGTTTTGATCATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTAGAGTTATCTGGTTTTGTTTAAAAGATGAATTTTCATGTACTGAACTTTTAGCTGCATTTAGTAAAACTTAACTTTCTTTTA TATATAAAGATTGAGGTTTTAGGGTTCTTGCTCTCTCGCTCTGCTGCGGTCGTGTGCTACTTTCGATTGGCTTCGCAGGATTTCCCTTCCCTCTTTCGCCGGCTCTTTTCCAGATTTTTTCAAGATGGTTCTACAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCATTCTTCATGGACGTAAAGTGCCAGGGATGCTTCAACATTACCACAGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACGGTCTTATGCCAGCCGACGGGAGGACGTGCTAGACTCACCGAAGGTTGCTCTTTTAGGAGAAAGGGTGATTGATGATGCGGTTCCTTGTTTCTTTTTGCTGGGAAGAAATTGCAGTCTCTGTTTTGATCATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTAGAGTTATCTGGTTTTGTTTAAAAGATGAATTTTCATGTACTGAACTTTTAGCTGCATTTAGTAAAACTTAACTTTCTTTTA ATGGTTCTACAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCATTCTTCATGGACGTAAAGTGCCAGGGATGCTTCAACATTACCACAGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACGGTCTTATGCCAGCCGACGGGAGGACGTGCTAGACTCACCGAAGGTTGCTCTTTTAGGAGAAAGGGTGATTGA MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
BLAST of ClCG01G007900 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2) HSP 1 Score: 180.3 bits (456), Expect = 9.2e-45 Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 1
BLAST of ClCG01G007900 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 4.3e-42 Identity = 81/86 (94.19%), Postives = 80/86 (93.02%), Query Frame = 1
BLAST of ClCG01G007900 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 9.6e-42 Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 1
BLAST of ClCG01G007900 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2) HSP 1 Score: 169.9 bits (429), Expect = 1.2e-41 Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 1
BLAST of ClCG01G007900 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 2.4e-37 Identity = 73/86 (84.88%), Postives = 75/86 (87.21%), Query Frame = 1
BLAST of ClCG01G007900 vs. TrEMBL
Match: A0A0A0KTU2_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.6e-43 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of ClCG01G007900 vs. TrEMBL
Match: B9RG16_RICCO (40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.6e-43 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of ClCG01G007900 vs. TrEMBL
Match: A0A059CAJ6_EUCGR (40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.6e-43 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of ClCG01G007900 vs. TrEMBL
Match: A0A067JH67_JATCU (40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.6e-43 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of ClCG01G007900 vs. TrEMBL
Match: A0A0K9QTH7_SPIOL (40S ribosomal protein S27 OS=Spinacia oleracea GN=SOVF_029410 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.5e-43 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of ClCG01G007900 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27) HSP 1 Score: 180.3 bits (456), Expect = 5.2e-46 Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 1
BLAST of ClCG01G007900 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein) HSP 1 Score: 170.2 bits (430), Expect = 5.4e-43 Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 1
BLAST of ClCG01G007900 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein) HSP 1 Score: 169.9 bits (429), Expect = 7.0e-43 Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 1
BLAST of ClCG01G007900 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein) HSP 1 Score: 151.0 bits (380), Expect = 3.4e-37 Identity = 70/86 (81.40%), Postives = 74/86 (86.05%), Query Frame = 1
BLAST of ClCG01G007900 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]) HSP 1 Score: 183.0 bits (463), Expect = 2.3e-43 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of ClCG01G007900 vs. NCBI nr
Match: gi|1009143419|ref|XP_015889256.1| (PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba]) HSP 1 Score: 182.2 bits (461), Expect = 3.9e-43 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of ClCG01G007900 vs. NCBI nr
Match: gi|351723661|ref|NP_001236263.1| (uncharacterized protein LOC100499804 [Glycine max]) HSP 1 Score: 181.8 bits (460), Expect = 5.1e-43 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of ClCG01G007900 vs. NCBI nr
Match: gi|731368067|ref|XP_010695943.1| (PREDICTED: 40S ribosomal protein S27-2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 181.8 bits (460), Expect = 5.1e-43 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of ClCG01G007900 vs. NCBI nr
Match: gi|357446939|ref|XP_003593745.1| (40S ribosomal protein S27-1 [Medicago truncatula]) HSP 1 Score: 181.8 bits (460), Expect = 5.1e-43 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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