MELO3C005089 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005089
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	40S ribosomal protein S27
Location	chr9 : 15807357 .. 15809213 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGGGTTCTTACTCTCTTCTTCTGCGGTCGTGAGCTTTTTTCGTTGGCTTTGCAGGATTTCCCTCCCTTCTTTCGCCGACTACTTTCCAGTTTTTTTCAAGATGGTGAGTTCTCATTCCTCTTCTACTCGATTTATTCTATTCTGTTTTTCGTTTTGGATCTGTTCGTTCCCATGTTTTTTCTACCGAATTGTATGAATAAACAGTTTAATGTATTTAGGTGTATTTTAAGCTCTGGGTTCTTCACTCTTATACTCTCTTAATTGATGGATTTTTATTTTGGTAGAAGAATTGATACATTTGAATCCTTTGTTTACATTTAAAGTTATGGTTGTCTTTTTGGGTTTTTTGTTTTTCGATTTAATTTTGCTTTGAAGGATTGTTTGATGATTGAGAATCATGTGAATGATATTTTCGGAGATGGGTATTGTAGGAAATTAGTGGCGGACCATGTTTTATAACGTGGGTTGAGAATAAAGGGATTCTTTTGATTCTTGTTTCATTCTCCAATTTTTAAATAAAAAGCTGGAACCCTGCAGTGAAATTTGAATGGAATTATGCACAAAACTTTGCACGGTGCACTGAAGCTATTTAACCGTCTTCATTTTTGCTTTTGCATTTTTTTTTCAATTTTCTGCTGTTTTATGTTATAGTTGGATTCCTGAAATTGAAGAATTATTTTGTTCTGATGATAATACTATAATTCTCTTTATTTTAACCTTTTTTTCCCATATTTTTGTGGAGTACATACGACTTGCCACTTGAACGTATTTCTTTATCTCCTTAACATGTTTGAATTTTTCTTGAAAAAACAAAAAGTCGAACATTGAAGTTATTCACATTCAAACACATGCTGGCGCTTATTGATTTCTGAGAATTGCAAACAAATGGAATGTTCTTAATCGTGTTCAGGCTTCCAGTGTAGCAGATATTGTTTGCTGATTTTGTTGTTTTGCTATACTCCCTTTCTTATTAATTTAATCTTAGTTTTTGTTCCAATGTCTTTGGCCTTGAAAAGGGGTATCGGGTTGTTAACTCTGGAGTTGCTCAAATGGGATGTTTTGTTTTTGTATCTACAGGTTCTTCAAAACGATATTGATTTACTGAATCCTCTTCTGTTCTTTGAGTTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGTATTCTTTTGCTTCTATTTCCTTTCCATGCCATTTATTGTGACTGTTCAAATTTTGCACATCAATCTAGTGTCCTATCACCAAGTTTTCTTTGTTCAGTAGTTTATATTTCTGCTCTTGACTTGAATTCTATAATATTATGAGACCCTTACAATACTGCTTTAATTGTCATATGTTGACGATTTGAAGGACGTCAAGTGCCAAGGATGCTTCAACATGTAAGTTCCATCCCTCATCACTAGTTTGATATATTTGCAACTTTTTTGGATTCTGCTAGAAGATTATTGAAATTTCTGATGATTGTTTTTGTCAACAAAATGCAGTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACAGTCCTATGCCAGCCAACGGGAGGACGTGCTAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGATGATGCGGTTCTTTGTTTCATTTTGCTGGGAAGAAATTGCAAGTCTCTGTTTTGATCGATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTAGAGTTATCTGGTTTTGTTTAAAAGATGAATTTCGTGTACTGAACTTTTAGCTGCATTTAGTAAAAGCTTAACTTTCTTTTATCCA

mRNA sequence

TTAGGGTTCTTACTCTCTTCTTCTGCGGTCGTGAGCTTTTTTCGTTGGCTTTGCAGGATTTCCCTCCCTTCTTTCGCCGACTACTTTCCAGTTTTTTTCAAGATGGTTCTTCAAAACGATATTGATTTACTGAATCCTCTTCTGTTCTTTGAGTTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGACGTCAAGTGCCAAGGATGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACAGTCCTATGCCAGCCAACGGGAGGACGTGCTAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGATGATGCGGTTCTTTGTTTCATTTTGCTGGGAAGAAATTGCAAGTCTCTGTTTTGATCGATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTAGAGTTATCTGGTTTTGTTTAAAAGATGAATTTCGTGTACTGAACTTTTAGCTGCATTTAGTAAAAGCTTAACTTTCTTTTATCCA

Coding sequence (CDS)

ATGGTTCTTCAAAACGATATTGATTTACTGAATCCTCTTCTGTTCTTTGAGTTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGACGTCAAGTGCCAAGGATGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACAGTCCTATGCCAGCCAACGGGAGGACGTGCTAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGA

Protein sequence

MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD*

Homology

[Close]

BLAST of MELO3C005089 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-41
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 GNCQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 7.8e-39
Identity = 79/88 (89.77%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
            CQTVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61 PGCQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-38
Identity = 78/86 (90.70%), Postives = 79/86 (91.86%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLL+P    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLHPPP--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRK 87
          GNCQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61 GNCQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of MELO3C005089 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-38
Identity = 76/86 (88.37%), Postives = 79/86 (91.86%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+C
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRK 87
          GNCQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61 GNCQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of MELO3C005089 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.5e-34
Identity = 71/88 (80.68%), Postives = 73/88 (82.95%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVL +DIDLLNP    ELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+C
Sbjct: 1  MVLSSDIDLLNPPA--ELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          G+C +VLC PTG   RLTEGCSFRRK D
Sbjct: 61 GSCSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of MELO3C005089 vs. TrEMBL
Match: A0A059CAJ6_EUCGR (40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-40
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089 vs. TrEMBL
Match: A0A0A0KTU2_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-40
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089 vs. TrEMBL
Match: A0A067JH67_JATCU (40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-40
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089 vs. TrEMBL
Match: B9RG16_RICCO (40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-40
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089 vs. TrEMBL
Match: A0A0B2SPT7_GLYSO (40S ribosomal protein S27 OS=Glycine soja GN=glysoja_015084 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.8e-40
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP +  ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPV--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQTVLCQPTGGRARLTEGCSFR+KGD
Sbjct: 61 GNCQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of MELO3C005089 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27)

HSP 1 Score: 169.5 bits (428), Expect = 9.5e-43
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 GNCQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 160.2 bits (404), Expect = 5.8e-40
Identity = 78/86 (90.70%), Postives = 79/86 (91.86%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLL+P    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLHPPP--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRK 87
          GNCQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61 GNCQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of MELO3C005089 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 159.5 bits (402), Expect = 9.8e-40
Identity = 76/86 (88.37%), Postives = 79/86 (91.86%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+C
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRK 87
          GNCQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61 GNCQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of MELO3C005089 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 140.2 bits (352), Expect = 6.2e-34
Identity = 68/88 (77.27%), Postives = 72/88 (81.82%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          G CQ VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61 GKCQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of MELO3C005089 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis])

HSP 1 Score: 172.2 bits (435), Expect = 4.2e-40
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089 vs. NCBI nr
Match: gi|356561118|ref|XP_003548832.1| (PREDICTED: 40S ribosomal protein S27-2 [Glycine max])

HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP +  ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPV--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQTVLCQPTGGRARLTEGCSFR+KGD
Sbjct: 61 GNCQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of MELO3C005089 vs. NCBI nr
Match: gi|1009143419|ref|XP_015889256.1| (PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba])

HSP 1 Score: 171.4 bits (433), Expect = 7.1e-40
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    E+EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--EIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089 vs. NCBI nr
Match: gi|731368067|ref|XP_010695943.1| (PREDICTED: 40S ribosomal protein S27-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 171.0 bits (432), Expect = 9.3e-40
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MELO3C005089 vs. NCBI nr
Match: gi|357446939|ref|XP_003593745.1| (40S ribosomal protein S27-1 [Medicago truncatula])

HSP 1 Score: 171.0 bits (432), Expect = 9.3e-40
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MVLQNDIDLLNPLLFFELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60
          MVLQNDIDLLNP    ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC
Sbjct: 1  MVLQNDIDLLNPPA--ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC 60

Query: 61 GNCQTVLCQPTGGRARLTEGCSFRRKGD 89
          GNCQTVLCQPTGGRARLTEGCSFR+KGD
Sbjct: 61 GNCQTVLCQPTGGRARLTEGCSFRKKGD 86

The following BLAST results are available for this feature:

BLAST of MELO3C005089 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS272_ARATH	1.7e-41	92.05	40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2	[more]
RS27_HORVU	7.8e-39	89.77	40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2	[more]
RS273_ARATH	1.0e-38	90.70	40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2	[more]
RS271_ARATH	1.7e-38	88.37	40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1	[more]
RS27_CHLRE	4.5e-34	80.68	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1	[more]

BLAST of MELO3C005089 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059CAJ6_EUCGR	2.9e-40	95.45	40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1	[more]
A0A0A0KTU2_CUCSA	2.9e-40	95.45	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_5G466870 PE=3 SV=1	[more]
A0A067JH67_JATCU	2.9e-40	95.45	40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1	[more]
B9RG16_RICCO	2.9e-40	95.45	40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1	[more]
A0A0B2SPT7_GLYSO	3.8e-40	94.32	40S ribosomal protein S27 OS=Glycine soja GN=glysoja_015084 PE=3 SV=1	[more]

BLAST of MELO3C005089 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	9.5e-43	92.05	ribosomal protein S27	[more]
AT5G47930.1	5.8e-40	90.70	Zinc-binding ribosomal protein family protein	[more]
AT2G45710.1	9.8e-40	88.37	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	6.2e-34	77.27	Zinc-binding ribosomal protein family protein	[more]

BLAST of MELO3C005089 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|255543244\|ref\|XP_002512685.1\|	4.2e-40	95.45	PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]	[more]
gi\|356561118\|ref\|XP_003548832.1\|	5.4e-40	94.32	PREDICTED: 40S ribosomal protein S27-2 [Glycine max]	[more]
gi\|1009143419\|ref\|XP_015889256.1\|	7.1e-40	94.32	PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba]	[more]
gi\|731368067\|ref\|XP_010695943.1\|	9.3e-40	94.32	PREDICTED: 40S ribosomal protein S27-2 [Beta vulgaris subsp. vulgaris]	[more]
gi\|357446939\|ref\|XP_003593745.1\|	9.3e-40	94.32	40S ribosomal protein S27-1 [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000592	Ribosomal_S27e
IPR011332	Ribosomal_zn-bd
IPR023407	Ribosomal protein S27e, zinc-binding domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0019643	reductive tricarboxylic acid cycle
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0006412	translation
biological_process	GO:0006096	glycolytic process
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0019427	acetyl-CoA biosynthetic process from acetate
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003987	acetate-CoA ligase activity
molecular_function	GO:0016208	AMP binding
molecular_function	GO:0005524	ATP binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44249	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005089T1	MELO3C005089T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44249	MU44249	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 48..86 score: 7.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 26..86 score: 16
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 1..88 score: 1.7
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 32..86 score: 2.2
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 40..72 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 32..86 score: 9.34
IPR023407	Ribosomal protein S27e, zinc-binding domain	GENE3D	G3DSA:2.20.25.100		coord: 32..86 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005089	Csa5G466870	Cucumber (Chinese Long) v2	cumeB363
MELO3C005089	Cla009062	Watermelon (97103) v1	mewmB032
MELO3C005089	ClCG01G007900	Watermelon (Charleston Gray)	mewcgB019
MELO3C005089	Cla97C01G008250	Watermelon (97103) v2	mewmbB009
MELO3C005089	Bhi12G000938	Wax gourd	mewgoB005
MELO3C005089	CSPI05G15990	Wild cucumber (PI 183967)	cpimeB353
MELO3C005089	Cucsa.033680	Cucumber (Gy14) v1	cgymeB005
MELO3C005089	CmaCh15G008030	Cucurbita maxima (Rimu)	cmameB252
MELO3C005089	CmaCh04G022270	Cucurbita maxima (Rimu)	cmameB635
MELO3C005089	CmoCh15G008300	Cucurbita moschata (Rifu)	cmomeB240
MELO3C005089	CmoCh04G023270	Cucurbita moschata (Rifu)	cmomeB625
MELO3C005089	Cp4.1LG01g19290	Cucurbita pepo (Zucchini)	cpemeB359
MELO3C005089	Cp4.1LG13g05750	Cucurbita pepo (Zucchini)	cpemeB157
MELO3C005089	CsGy5G015700	Cucumber (Gy14) v2	cgybmeB303
MELO3C005089	Carg17758	Silver-seed gourd	carmeB0483
MELO3C005089	Carg01400	Silver-seed gourd	carmeB0821
MELO3C005089	CsaV3_5G025010	Cucumber (Chinese Long) v3	cucmeB362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005089	Bottle gourd (USVL1VR-Ls)	lsimeB013