CmoCh04G019720 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G019720
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA repair XRCC2-like protein
LocationCmo_Chr04 : 10105508 .. 10118329 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGGTTCCGGCCAAATAAGCGCGTTGCAATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTTACTAGAGTCCACAAAGAGCGAACCTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCTCCACGTCGGCAATGTGGTCGAGCTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGTCTAATTATCAAGTTGAATTTGTCCGTTTGAACTTCTTGCATCGTTTATAATTGACAACTTCGATGAAAAATTGTTGGTGATTTACCTCGAAAGAATTTGAGAACAATTTGTGGGATATTAAAAGTAGACTGCTTCTGTGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGCGGTGAGCTATTTGTGCCATTTAATATTGATAATATATTTACTTCAAGGTTATCTCCACGAGCTGAAATTTTGCTTAATGATATCTGTAATGTCTCGGGTCATTTCTAGGATTTATTGCGTCTTTGAGTTATTAATCTGTACATATGCTTCTGTTATACATTTGATATAGAGCTAGTCTTGATGATTGCTATTCTGCTTGCCTAATAAGAAAATAGCGCTCACAGTAAAATATTAGTTATTTACTATTTTTCTTGGAGGATTCTATTTCTTTGATGTGCACACAGAATAGCGAAGGAAAAATAACCTTGCTTATATTCTAAGATATCTATGGAGAATTTCCAAGAAAGATTGGCAATCTAGCTTCCAATCACGATTTAAGACAATGATTGGTTCAATCTCTGGCCTTGGAGATGAAATTGACGACCTTGAAGGTCTTCATTGCTTAATCTATGTTTTCACCGGTCTTTGTCCGGTAGGGAGGCTGGGGATATTTGATCCTTACTTTCTTTGTTGGAATCAGTCTGTGCAAATGTGGGGGAGTGGGAACTTTTTCTCTGGATCCCTTTGACCCTCTGAAGGGTTTTTCCTGTAAATCTTCTTTAATCTTTTGTGTGACTCTCACCATCCTTGATCTTTATTTACCTTGTTATGGAAGCTTAAAGTGCCCAAGAAAATCCTCATTGCTTATGGTTCGAGCGGAATGGGAGATTTTTTTGAACCCCACTTTTTGTATATCTAGTTTGAGGTTTGGAAGTTCCTTTTATGTTGGGCTGTTTCTTTCTATGCCCTTCATTATTCTCTTTCTTTTCTTGATGAAAGTAGCTTTTGTGATTAACTAAGATGGGTGAACTTTCATGCCAATAGCTCCAGTATACATGTTGTTCCAAGCTTTGCTACACAGTTGGTGGAGAGGTCATCCATAATCAGTAATTTCACTTGAGAAATATTGTTGGCTGTTTTTTGGATGGGGAGATAGAGAAATTGTGGACTTTTGTATCTTTTGAGCATTAGTTGCATTTCACTTATCCAATGGAAAGTTTCATTTCTCGTTTTAAAAATAAAAAAGAAAACAATGGTAAACTACAATTGCAAGTAGAGTATCTGTTCGTGAAAGAGTTTGAGACTGTCTTTTCTGTCTTTCCTAGTTTTGATGTTCCTAAAAACATTTCTTACTATTTTCATGTATCCTAATGAACACGCAGCTTGCTTAAGAAATATTGTTGTCTGTTTCTTGGGTGGGGAGATGGAGAACTTGTGGACTTTGTACCTTTTTTGCATTAGTTTCATTTAACTTATCCAACAGAAAGTTTCATTTCTCGTTAATTAAAAAAAAAAAAGGGAAACCACAGTTGTCAAGTAGAGCATCATTTGCTGAAGTAGTTTGAGACAGTATTTTTTGTTTTCCCTAGTTTTGATGCTCCTAAAAAGATTTTTACTATTTTCATGTATCCTAATGAACGCGCAACTTGTGTCTCTAGAAAAGATAGATGAATCTAAGTGTTAGACAAGTAGCTCAGAGTAGTGAAAAAGTGTAGAGGAAATAATCCATAGGGTATTAGAGGGAAAAATAATTGGGAAGATGTTGTAGACACAAAAGGGGACAGAAGTTTTGGTACAGAGGAGATTTGATGTCATGGAAGATTTTCATTAAAATAAAAAATAAATGGCTACACATATTGTCCATCTTCAAGGCTTTCCCTATTTGTTACTTAAGCATGAGAAGAAAATGTCATTGTATTTCTTGTATATTATGGATTAAATACGAGGCTTTCTTATATGGAAGAAAAACCATCTACCAATAAGGAAGAAAATCTTACAGATTAAAATAATAAGTATATACATAATGCATATCTAATATTACAAAATATAAAGAAACACTCCACCTCAAGCGGACTTATAGATGTCTTCCACAGCCAACGAAGTTGATCGAATTGTCCTTTCAAGAGCCCTTTAGTTAGAATATTAGCCGTTTATTATGTCGTTGGAGATCAGATATGCATATTACATATGCAGCAATCTTCTCCTTTATGAAATGCTTGTAAACTTCAGTATGCTTCATTCTATCATGTAGAACTAGATTGTGAATTATAGCAATGACAGTCTTGTTGTCACAATAGACGTGCATAGGTGTCTTTTGAGACAATTTCAGTTTTTCAAGGATTCTGTTAATCCATATACTTTCACAAATTCAATTGGGTAAGGCCCTAAATTGACTGCAACACCACTCTTGTCCACTTCATTTTGTTTTTTTTACCACATCATGTAACTAAATTTCCTCCAACAAAAGAACAATAAGCAGAAGTAGATCTTCTATCAGTAGTACTTTCAACCCAATATGCATCAGTGACACTTCAACTTGGAAATGGTTATGTTTCTAAAATAATATACACCTAGAGTTTCTTTCAAATACCGTAGGATTCTTTACAACTTGCTATTATTAGTGAGCCAATCATTTCTTCTTAGTCATCCACTGAGGATAATATTATGGATCCTGATTTAGTTGAAGAAAGTTTTTCATGTCTCTTGGTCTCCTCTTTAAGACAATGGGGTAGTAGAACTTACTAACATTACCTCCATCAAAGCCCTCAATCCCGACTCCTAGTAGTCATAAAGTTATCTCCACATAAGGTACATTTTTTATTCATAAGGTGATTCAAAACCCTACAGTTCATCTTTCACCCCTCTCGGTGTGATGACTTTGATGTTGAATATGAAGTTAGCCTAAGCAGTGTGGAATCTCTTATGGAGCCTATGGTTAATCATTTTGAGCTTTTATTTAAAGAAAATGATAAGGGGATTCTCCATTCTTCCTCTTTGGCGCCTAGCAAATTTGTATCTCTTATTGAAGCTTGTGATCTTGAATTACGGGGAATTCCATCTTCAACATTTTAAGGACTCCTTTTTTTACTAAAGTTTCCAGAGAGCTTTTTTTGGTCTTTACCTAATTCAAGTTTTGGGGTTCTCGTTTGTGGAGTATCTCAGCTGGTTTGTTAGATCTTTTTGGGCTGAGGATTTTAGCCTACTTTTTCTTGTATTTTCTTATTTTCAGTTGTTGTGTTCAAGTTCTCTTTGGAGTTGAGCTTTGGTTTGATGAGTCCTTTTTGTTTTTTGGTCGTTCTTTTTGTTCGAAATTGTTTTAAGATCTTGTTCTGTTGTCTTGTCCTATTTCTGGTTCTATTTTCTTTTTTCACTACCTTTAGGAGTTTGTATGTTTTGATCATTTTCCTTTTCATTTTCATTATATCCCCAATGAGAAGTTGTTTCTTGTTAAAAAAAATGTATTTGATAAGTCACACAAACGCAGGAGATTGGGGAAATTTTGATGCACTATATACTACATGCCTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGGTACATTTCTTCTTATTTAAAACAAAGTTAGCCTTCTTCATGCATTTCATTCGCATACCTTTTTTTAAGAAACAGATTTCATTAATAAATGAAATAACAAAAAGGAATAAAGCCTCAATCTATAAACCAAAGAAGTTGTTAAAACTATATGTAAAAAAATTAAATTTGACATGAACTTATAGTTTTCAGTTCAATGGTAGCTCTCTCCAATTCATATTGATTTCCACTTGTTGGGTTTGCAACCACAAGTGAGGACACTGTCAAATTGTATTTAATAGTAAATAGGTAAATATAGGAGCTTATTAGTCTTTTTTTCATTTATTGTAATTTTACTATTATTGGTTTAGGACTTCCATGTGTACTAATATATACTCTGCTATATAGATCATGTATTATCCTCTACTATACAAATCATGTATTATTCTCTACTATATAGACGATGTATTATTCTTCCATATTTGGTCTCACAATAACCCAAAACTAAATATACCATAACACATCAGCCTAAACTTTTGGGTTCAATGGTGATTTAACCGTGAATGAAAAAGCTTTCAATTGATGGATAAAAGGATATAATTACATAACAAGGGATAGCAAGATTCTCTATTGGTCTCCCTTCTAACTTCGTTTGCTACTTGAGATTTCCCCCTTTAAATTAAATCTTTGGAAAGCTAAGATCCCAAAGAATGCTAGAAAATGAATTACAAAGACACAATTGATGCAACCCTCAAAGTTTAGGAGTATAAATTGATTTTTTCTCAAAAAGTTACTAATTTGTAGTATGACGGAATGCTAAAAAACACTGAGTAACAATGAGTCAGCCTACCTTCATAATTGAAATCTCTTCCACTAGTCAATTTCATAATTTCCTCCATGATGGGCCACCAAAAAGAAGCAGTCTGGTGACCTCCTAGTGGTAGACCAAGATAAGGAAAAGTAAGGATTCAACCTTACAGTGAAGCCTGGAGGCTACAAGAGACAGCTTTGGTCTTCTATATTAATCCTCATATGGCAGATTTAGCTGAATTTATTCTAAAACCTGATAGGCATTCCAAAAACCTGGTGGCCGTTAAAAATTTCCCTCTGTTTTCTAATAAAAGAACTGTTTTAATTCAAATATCCAGCATCTTCAATCTCCTGTTTTTATCCACCTTTGTACTTCAAGTTGGCTCTCTATAATTTTCTGCAACCTCCATTGTGTACAATTTGTCTATTTAATTCTTTAGACCTTTTGAATTTCAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAATTCGGTTGCATCTACTCATGATCGACAGGTTTGTGCTAAAAATAATTTGGAACCTCGTGATGCGTCTCCTGCTAGATAGAGTATCCAATTTCTTCTTATTTGTCGATTTATTTCATGAACATAAAAGATAAAGATGATTGCATTCTTATGTTTTTTTTTTCTATCTTCCTCTGCCATGTCATTTATGCCAAAGGACTTTAAATTGGTTTTGCTACTAAGAGTACTGTAGAAAATACTCGTCTTAACGCACTTTCATTGTTCTTTTTTTTGGGGGGGGGGGGGGGGGCTANTGCCAAGAGTTTAGGTGGCCATTAGATTGAAATTCCTCTAATAACCTTTGAAAGTCTTCTCGCAAAAAATACTAATCTTTCTAGAAAATTCAATTGTGTATCCATCAGGGCCTAACGCCTAATTCTTAGGTTTTTCATACCCATTCTTATTTCTTCTAGAGAAAATGGAGCAATAAGAACAGAATTTTCTTTTAATAAGAATATAAGAAGACACCGTAGACCAGCAAAGATTAGAAGGAATAGGACAATTGCCTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATAAAAAAGAGAACCCCAGAATTTCCTGCTCAAATTTTCTTTAAGCAAGAGGAGAAGCCCCAGTAATAGAAAACAGTTCTGCAATCAGATTTTTTCTTTTTTTAGCTGCCAAGAAATGATGAAAGCTTAATCAATGCAACTTACATTTTTAATCCAATTTCTTTCCTCAGAGAAATAAAACTCCATAATTTCACCTTTAATCGCAATTCTGATGTTTAGCTCAGAGGAGATAACACATTAGTTTCTGATTTTGCATCAAAGAACTCCAGTTCAGGTATGAGACTTTGTTCCTTTCTTTTCCTTTCTGTTTCAAATTCAGCATATCATTTCTTGATATCTTCTATTAATTTTCTGAGCTTTGAACTAATAAAAAAAATCCAGCCCATCCTTGAGAACAATCTTGAACAAGGGATTTCTCTATAACTTTTCCATATTCCGAATGAATAAGCCAACTGTTGTAGAACTGAAAAGGGGAAGGACCCCAAATGAATGCTCCTGCGTCAAGTAACAATGGAAAATGATCTAAAATGTGCAAGCTTGTCTAGATACTCTGGAGTTATCAAACAAACCATTCCATATTTTTGGTCAATGATCTCTATTCTGCTGGAATAAAGCCACATTAAAATTTCTTCTCTTGAATTCTAAAAGCTGAACAATCCATGCAATTAGGAGTATGATAAACTAAACCCCCAAAATGCTGCCCAGTTTCTTCAAAACAATATCTTTTCCAGTAAGGCAAATGAAGCTTTTGCAAAGAAATCCAACCACCATATCCATATCAACTTAGGATGGGAACTATCATTTTGTGACCATTTCTCAATTTTCCGATGGAAATTACCAATTTACCTCCACTTACCCTCAAATTCAAAAACTGAAAATTCATCATTTAACTTCAAAAACTTATCTGCCATAAATGGATTGATTAAAACTTTGGATTGTAAATAAACTTCTAGAGAAAATTGAATATCCTTCCAAGAGCTCTGGGCTAGCAATCTGGATAACAAAAATGAATTGAAAAATCTTTCACCTACATCATTGTCTTTCCTAACTCAACATTAGAAAGGAGGAGTCTTCTAGGATGAAAACTAAGTGTGGGGCTGCAATAGACAAGAGCATTATAATTTTCTATTTTGAAAAAAAGGAAAAATCCCAAATCGATAAAAAGAATAGCAAAAACATTAAGGTTAGAAAGGAATGGCCAAAGAATCTCCAAAGTTAGTAACTTGTAATGGCAGTTAAGAAAACACAAGGTTAAGCACAAAATTACATTTATTAGTGGCGACTAGTCAATGATGAAGCATAGCATGACCCACGACGAGATAGTCTAGCGATTATGTAACTACAATGATGGACTCCGGTGACAATGTGACCTATGTCGATGAATCCCTTCACCCTCAAGGTGAATCTCTTATGTGACGACGAGTCTCCCGATGGTGCCCAAATCTTGATGGGCGACACCTCCAACGTGCTACATATTTCCTACGACGGTGACACTAGACATGCCAAATCTTTGGTGAACACACCTACGACCAGCTACTCGTGACAGCCAACCTTTAGCATGACCTGTGTGCCTACAGCCCCCTGCGGCAGGCCATATTTGCAAATTTGAGGCCTCTCCTTGTGAAGGTTGAGACCTACGCCAAGCAGTCCAGTACTGTACATTAGTTTTCCTCGGTCACAGGGGACTTGCCATCTTCTCTATTATGGATTATCCTAGCAACAGCTCACTCGAGAAAGGGAACACAATAAATGGCTTTTTCATTTTCTTAGTCATAGGGATGGCACCATCTCCTCCACCTCTAAAACTCACAACCATTATCGATAGAAAGACCTATTTAATTGAGCTAGATGACAGATATAGGGAAACAAGGATAAAATTATCAATGATCACCAGAGACGAAGCCTTTTTCACATCACTCAAATGAGATTTTTTCCAATGGCCAATAACATCTTACCAGGCCCTACTATCAGCCCCACTGAATCAAAGTTCTTCAACGTTTTCCAAAACAAACCATTTGGATAGAGAAACTCATCAACAAGAAGGGTACTATGGTCGATATTTCTAGTTCCATAGAAATAGTGGTCTTAGTTAACTTTTTGTTCCAGCGAGTGTTGAACAAAAATGATGGACAGCCTTCCTCAACCTCATTGAAGATTAGCCTCTTTCATCCACCAAAAAACCTTTTCAACAACTAAAACGCAATCAATTTCAGAATAAGAAGCCAACCGACAAATACGCTTTCCGTCCCTTGCCTTCCATAAAAAAAAAAAAAAAAAAAAAAATCCATCACATTAACTAGAAAATCCCTATACAGAAACATTACCTTTCGATCCTCAACAAAAAGGGCAAGACAGTCATCACAGAGTTTCCCCGCTCCCTTGTTCCTATTGTTTGGGATACAGTGGCAATAATCACCTGTAAAGAAAATAGAGGTGTCCATCTCTTGATAATAGTCAAAGATTGAGTTTTTCCTTGCTCCTGTCTTTTAGGTTGCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACGCTACTTCAGGTTTCTTATAAAAAGGAAAGGAAAAAAGGTTGGAATTGTATTAAGGTGCACATATGTGAGAATTATAAATCTTTTCTTCTGCTCAACGTACTGCGCTTGCCTAATTTCTTATTGAATAGCCAATTGTATGTATAAATGTCGAATTTGGGAATCATTTCTTTCTTCTTTCTGTTTAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTTGCCTTTGTGGGGTTACAACAGGTAGTGCCTTCAAATTTTAAATTGTTTAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCACACTTTGCATATGGGTGAATTTTTGCATTATTTAATGGCTACCTCTATCCATACTTTATATACAATGACTTGATTGAAGTATGATTGAATAAGGATAGGAATCATTAAATCTAAAAATTATGATTTTTTTTTTTATTTTACTAATAATTTATTAATTGACTTAATTTAATGTGAGGCATTCAAGATAGAATGCTCGGGAAAAAACAAATGACATATACCACGATTATTGTCTAGTTGNGCACACTTGTCAAATTAGAATTCTCACTAAATTTTGGGAAAAGGAGATTATTAGCTGCCATGTTTCTTTTCTGGTTATACTTTTTCAGGCATTCCAATTTAAGTCTTGCATGAGCTTCTTATTGTGAGTTACTGATGGAGTAGGGTTTGCGATAGAGAAAGTCTCCAGTTACTTTTTATCATGTGATTTGTGCCTCAGAGATGCATTTTTACAAATTCGGAGGATATTACTTCATTTTAATCTCACTCTCTATTTGAAGTACAGGAAAGTTGATTAGACATACTAGGAATGTTTGGTGGTTTCTGCTGCTTTGATTAGTTCTTTTACAAGGTTTAATAACATCATCTCTCTTTCTGTTAAAGAACAGATTAAACATCCTAGTCTAGGATATCCCCGTTTTTCTCTCTCAAATACTTATTTCCAAATCATCTCTTCGAGTTAACGTCTCAAGCTCCATTTCCTTCCTTTGCAGGGGTTGACTTTATCTCCCTGGTCTATAAATTTTGTAGGCTCCCTCTTCTTTCCATTGACGTGATTGTTTCTTATTAGAAAGAAAATTAGAAAACTATTCCCCCTACTACTTCATATAGATACCATCAATAATAAAAGAATACTAAACTACACCTCATACAAGCCAATGGTAACTTTTTTCTCGCATGCATAATTTTGTGAGAATCATCCAAAAAAAAGGTGTTTCAACAATGTACAATTGTGTTCCCATTGTTATGTATTCCTAGTGTCATGACAATTTTATGTATTTACTCTCTCAGGAAAGGCTTTTCTCTTGCAAATATGTTAGAAGCGGCCGTAGAAGAAGTTAAAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCTACCATTTTTGGGGATAGATCTTCTGACATAGTGAGACGGTGAGTTTAAGGCCAAAAGGGACTTTTTTTCCCATATGTGAAACAAAAAGTTGCATAGCATAGTCTTAACTCTTGAAGAATTATGTTTCTTGTACTTTACTGCCTAACTCGGTATGCTTTACAAGATTGGTGATACGTGCCTAGTCTTAACCGTTTCATATTTGAGATATGAATGCTCACTCTGATCCATAGACTTGCATGCTTCTTTCACATGGTCAAGTACTTTAATAACTTGTTACAATTCTCTATGACTATTATGCTTCATATTGCTTGAAGACTTGCTTTGCGAATTGGGAGATCTATGATATGAATCTACGTATCACCAATTCTTTTGTTATTCTTGCCCATGTTTTGGTTGCTTCATTTTCAATCTCTCTTTTCTTGGATAGGAAGCAACTACCTTCATTGGTTCTTCCATCAAAAGAAAAATAAGGAGAATGATGTTATGCTATATGGTGTGACCTTGATTTCCAAATTGATGAACTTTTCAGGTATTGATATGAGTTGGAAACTGTAAATTTCACTTTAACTATATTTAGTCTTTTTTAAGACAAGATTTCATTGAGATAAATGAAAGAATGCAAGACATAAAAAACAAGCCCACAAAAAAAGAGGCCCAACACTAACTATAAGAACGAATCCAATCCAAAAGAATGTGACAAGTAATTACAAAAAGTGTAATTAATATACTCACACAAAAAATAAATAAATCTAGCTAACCCTTAAAACTCCTCCCAAGACCTCTCAACCTCTCTAATTATCCTACCGTTCATCTCAAGCTAAATTTCCCACAAATGGGGGGGAAAAGAAAAGAAGCCTTCAACAGTGCTTTCCTTTATCTTGAGAAGGAGGGTTCAGGAGCACTTCCTTATCATAGAATAACAGACTTTGTCGCGAGCCAACACAATCCCATAAGTCATGAAAAATTGATTCCAAAGGAAGAGAGCAAACCGACAATCTTTCTGTCGTTTGATGTACTCTTCTCTCAATAGGGGTTATGTTTTTTTCTACTTTTTGGAAGATTTATTCCAAAGAATATTAAGTTCTTTGTGTGACAAGTTATTCATAGATGAGTAAACACTCTTGCTTTAATCACTATAAATTCTGTTGGAACTAATAATTATCAACAATTGAAAAGCGTTCCTTTTGTAATAGCCCTTTAGCCTTGGTTTGAGAAATATTAAAACTACGGACATTGTTATTTTGATATTTCTGTTTCTAGCTATGCTTCTTTTGATGATATGACATACACTAACCCTCACAAACTTGTGTGTCAGTGAAAAATCTTTATCAGAGACGGAATCAAGACATGGGAAAACCGATGGTGGACAAGTTTTGTACCGTGAGTATATGCCTTCTGCATGGCAGGTAATCTATGAAATTTTCCCTGCCTATATTTTCTTTTATGAAAGCCATAACTTGCGTAGTTAGAAGTGTTGTCAGATTTTAAAGATAACAAGTCTCTCGATCACGTTAACCAGACTTGAGGTATTGCCTGAATGAAGAAGAAAACAAACATAAATTTAAGGATAAAAAACTAGAAATAAAATTGTTATCAAACAGTGCCTAAATCATATAAGAAGAGACAAGACATCCAAAGCTCCTGTTGTTACCATCACCTTCCTCTGAATTTAATGCATCATTCACTGATTTTCTGGAGACATTGTCCTCGCGGTGTACCCAAGGCTCAATGTTTTCCTTTCCTTCTTCTTCTGTGTTTTGGAGTCGAGTATTATAAGTCTCGTTTGCTAACTATTTAGTTTTTAAAAATTAAGTGTATGAATAGTCTACCTAATGGTTTCTTTGTTTTATTATCTACTTCTAAAAGTCGTCTTCAAAATCTAAATCATGTTTTGAGAACTAAAAAAATGTAGTTATGTTTTTAGAATTTGGCAAAGAATTCTAGTATTTAGATAGAAAAGATGAAAACCAAAATCAAATCCAAATAGTTATTAAACGAAATCATATCTATTTGTTTGGATTGAAAATTATATCAAGCCTTAGTTTCTATTTGAAAATTTGATGATCGCTATCTTTTTTTTGTTTTCGTTGTTGGAATGTCTTCTTATAGTAAACTACAACTGTAAACACATTCTCATTTTTAAGCACTATCATTAGAATCTTTCTTAAATTATAAACAAATAATGGAAAATTAGTCATTTTGTATTTAAGTCTTATTCCATTTTAGTCTAGTTCCAAAGTACTCCACCAGAATGATATTTTGATCATTCTAACCTTAGAAAGAGACTAATTTGTTTGGGTTTTGCAGTCTTTTGTAACGCACAGAGTTTTTGTTCGAGGCTCAGGTTTGATTACATATTATGCTCAAAAGTGGAATGATTTGGTCAACTTTCTATATATTCAGTCATTTATCTGATAGCTTTTATTGCCTTGCAGACGAATATCTTACAGTGAGCAGTTGTGAGCATCAGTCAATATATTTTTCTGAATGGCTGCTACCATCCCTGGGTGTCCTCGATAAATTTATTGTCAAAAATGTGAGAAACCAACCCATTTTGCATATATTATCACTAAACTCATCAACCTCCATACTCATCGATAGTAATTGATATGTATTATTTCTTTTAAAGTTAGAGGTTCAAATTCTCGTAGTACTAACTTTAAATGGATAAGGGGTTAAATGTATTTGTTGTCTAAATAAACTTACATGAAAAAATTTTGGATTTTACATTTGTACCTGCAGGCTGGCGTCTTTATGGTACCATGAACTGCATTTGTTTGATATGCCACTGACCAGTTCTTGGGCGTTCTTATGATTCCAGGTCAGCCTTTTGTTTTTATTTGAATAACGTTTGGATGTCCAAGTTTTGTATTATTATCATTGTAGTTGAAGTTTTTATTGTTCAACTATCTAAAAAGCATCTACTTTATTATGATAGTTAACGTCTAAAAGTGGCGTTTTAAACTATGGTATGCTCGTCAACAAAAATTAATGTTGATGTTTTCTACCTCAAATATCATACAAAAATGTAAATAATTTCAGTGATATTTTCTTTTTGTTGACTTGTATTCAT

mRNA sequence

CAGGGTTCCGGCCAAATAAGCGCGTTGCAATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTTACTAGAGTCCACAAAGAGCGAACCTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCTCCACGTCGGCAATGTGGTCGAGCTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGCGGAGATTGGGGAAATTTTGATGCACTATATACTACATGCCTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAATTCGGTTGCATCTACTCATGATCGACAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTTGCCTTTGTGGGGTTACAACAGGAAAGGCTTTTCTCTTGCAAATATGTTAGAAGCGGCCGTAGAAGAAGTTAAAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCTACCATTTTTGGGGATAGATCTTCTGACATAGTGAGACGTGAAAAATCTTTATCAGAGACGGAATCAAGACATGGGAAAACCGATGGTGGACAAGTTTTGTACCGTGAGTATATGCCTTCTGCATGGCAGTCTTTTGTAACGCACAGAGTTTTTGTTCGAGGCTCAGACGAATATCTTACAGTGAGCAGTTGTGAGCATCAGTCAATATATTTTTCTGAATGGCTGCTACCATCCCTGGGTGTCCTCGATAAATTTATTGTCAAAAATGCTGGCGTCTTTATGGTACCATGAACTGCATTTGTTTGATATGCCACTGACCAGTTCTTGGGCGTTCTTATGATTCCAGGTCAGCCTTTTGTTTTTATTTGAATAACGTTTGGATGTCCAAGTTTTGTATTATTATCATTGTAGTTGAAGTTTTTATTGTTCAACTATCTAAAAAGCATCTACTTTATTATGATAGTTAACGTCTAAAAGTGGCGTTTTAAACTATGGTATGCTCGTCAACAAAAATTAATGTTGATGTTTTCTACCTCAAATATCATACAAAAATGTAAATAATTTCAGTGATATTTTCTTTTTGTTGACTTGTATTCAT

Coding sequence (CDS)

ATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTTACTAGAGTCCACAAAGAGCGAACCTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCTCCACGTCGGCAATGTGGTCGAGCTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGCGGAGATTGGGGAAATTTTGATGCACTATATACTACATGCCTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAATTCGGTTGCATCTACTCATGATCGACAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTTGCCTTTGTGGGGTTACAACAGGAAAGGCTTTTCTCTTGCAAATATGTTAGAAGCGGCCGTAGAAGAAGTTAAAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCTACCATTTTTGGGGATAGATCTTCTGACATAGTGAGACGTGAAAAATCTTTATCAGAGACGGAATCAAGACATGGGAAAACCGATGGTGGACAAGTTTTGTACCGTGAGTATATGCCTTCTGCATGGCAGTCTTTTGTAACGCACAGAGTTTTTGTTCGAGGCTCAGACGAATATCTTACAGTGAGCAGTTGTGAGCATCAGTCAATATATTTTTCTGAATGGCTGCTACCATCCCTGGGTGTCCTCGATAAATTTATTGTCAAAAATGCTGGCGTCTTTATGGTACCATGA
Homology
[Close]
BLAST of CmoCh04G019720 vs. Swiss-Prot
Match: XRCC2_ARATH (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 315.5 bits (807), Expect = 6.8e-85
Identity = 160/328 (48.78%), Postives = 227/328 (69.21%), Query Frame = 1 

Query: 4   RQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVN 63
           R WI GDETA +ML+RV K+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++
Sbjct: 7   RSWIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAIS 66

Query: 64  CILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGN--GSGDWGNF----- 123
           CILPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+ N  G+G W        
Sbjct: 67  CILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNV 126

Query: 124 ---------------DALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLH 183
                          + LY +C++RF Y+RCYDS E L++LKT+H+++Q +++  G ++ 
Sbjct: 127 KSCKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQ-QQEACGSQVG 186

Query: 184 LLMIDSIGAYHWVDRVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKAT 243
           +LMIDSIGA+HW DR+SSSL L  +NRK  SL N++E  V+E+KKLLLVH  +V+A+K T
Sbjct: 187 VLMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGT 246

Query: 244 IFGDR-SSDIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLT 303
           I+ ++  ++   R+ S ++  S +  +   Q  +RE+MPS+WQ+FVTH++ +R S +Y +
Sbjct: 247 IYEEKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQS 306

Query: 304 VSSCEHQSIYFS-EWLLPSLGVLDKFIV 308
           + + +   + +S EWL P L  +D+FIV
Sbjct: 307 LQTGQQNLLAYSLEWLQPQLSRIDRFIV 333

[Close]
BLAST of CmoCh04G019720 vs. Swiss-Prot
Match: XRCC2_HUMAN (DNA repair protein XRCC2 OS=Homo sapiens GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.9e-21
Identity = 80/285 (28.07%), Postives = 131/285 (45.96%), Query Frame = 1 

Query: 11  ETAAEMLTRVHKERTSL--LVPPLHR---VPLHVGNVVELVGPSGSAKTQILIQAAVNCI 70
           E+  E+L R+ + R+SL  + P L      P+H G+++E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLARL-EGRSSLKEIEPNLFADEDSPVH-GDILEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALYTTCLR 130
           LPK       GGLE  V+FID D   D+ RL  +L+ R+ + +        + +   CL 
Sbjct: 69  LPKS-----EGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSS--------EEIIKYCLG 128

Query: 131 RFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSSLPLWG 190
           RFF + C  S   L TL ++              L LL++DS+ A++W+DRV+       
Sbjct: 129 RFFLVYCSSSTHLLLTLYSLESMFCSHPS-----LCLLILDSLSAFYWIDRVN------- 188

Query: 191 YNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSETESRHG 250
               G    N+ E+ + +  + L     +V   +  +F    + + +   S  E      
Sbjct: 189 ----GGESVNLQESTLRKCSQCL---EKLVNDYRLVLFATTQTIMQKASSSSEEPSHASR 248

Query: 251 KTDGGQVLYREYMPSAWQSFVTHRVFV------RGSDEYLTVSSC 285
           +     + YR Y+  AWQ  V HR+F       + S+++  VS C
Sbjct: 249 RLCDVDIDYRPYLCKAWQQLVKHRMFFSKQDDSQSSNQFSLVSRC 259

[Close]
BLAST of CmoCh04G019720 vs. Swiss-Prot
Match: XRCC2_MOUSE (DNA repair protein XRCC2 OS=Mus musculus GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.4e-20
Identity = 84/272 (30.88%), Postives = 127/272 (46.69%), Query Frame = 1 

Query: 11  ETAAEMLTRVHKERTSL--LVPPLHR---VPLHVGNVVELVGPSGSAKTQILIQAAVNCI 70
           E+  E+L R+ + R+SL  L P L      P+H G++ E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLARL-EGRSSLKELEPNLFADEDSPVH-GDIFEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALYTTCLR 130
           LPK       GGL+  V+FID D   D+ RL  VL+ R+ + +        +     CL 
Sbjct: 69  LPKS-----EGGLQIEVLFIDTDYHFDMLRLVTVLEHRLSQSS--------EEAMKLCLA 128

Query: 131 RFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSSLPLWG 190
           R F   C  S + L TL ++   L          L LL++DS+ +++W+DRVS       
Sbjct: 129 RLFLAYCSSSMQLLLTLHSLEALLCSRPS-----LCLLIVDSLSSFYWIDRVSG------ 188

Query: 191 YNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSETESRHG 250
               G S+A + E+ +++  +LL     +V   +  +F    S + +   S     S   
Sbjct: 189 ----GESVA-LQESTLQKCSQLL---ERLVTEYRLLLFATTQSLMQKGSDSADGPSSSKH 245

Query: 251 KTDGGQVLYREYMPSAWQSFVTHRVFVRGSDE 278
             D G + YR Y+  AWQ  V HRV     DE
Sbjct: 249 PCD-GDMGYRAYLCKAWQRVVKHRVIFSRDDE 245

[Close]
BLAST of CmoCh04G019720 vs. TrEMBL
Match: A0A0A0KMH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 9.3e-150
Identity = 268/321 (83.49%), Postives = 287/321 (89.41%), Query Frame = 1 

Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDE+A+EML RV KERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEG--NGS---GDWGN 120
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDI+RL QVLKLRI+E   NGS   GD  N
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180
           FDALY TCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R+SSSLPLWG+NRKGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFGDRSSD V+R+K
Sbjct: 181 RISSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDK 240

Query: 241 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300
           +LSE+E +HGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L +SSCEHQ  Y SEWL
Sbjct: 241 TLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWL 300

Query: 301 LPSLGVLDKFIVKNAGVFMVP 317
           LPSLG LDKFIV NAGVF VP
Sbjct: 301 LPSLGFLDKFIVTNAGVFSVP 321

[Close]
BLAST of CmoCh04G019720 vs. TrEMBL
Match: M5XPA7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014924mg PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 7.5e-99
Identity = 184/311 (59.16%), Postives = 232/311 (74.60%), Query Frame = 1 

Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MA + WIDGDE+AA+ML RV  ER  LL+PPLHRVPL VGNVVELVGPS SAKT ILIQA
Sbjct: 1   MAAKGWIDGDESAAKMLGRVATERPFLLLPPLHRVPLRVGNVVELVGPSASAKTHILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 120
           AVNCILPKEWNG+ YGGLE  V+FIDLDCR DI RLS++LK +I E NGS  +   + LY
Sbjct: 61  AVNCILPKEWNGVHYGGLERLVMFIDLDCRFDILRLSEILKHQITEPNGSMYYD--EELY 120

Query: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180
             C+RRF Y+RCYDS EFLATLKT+H++LQKE++   + + LLMIDSIG +HWVDR S+ 
Sbjct: 121 ALCMRRFLYVRCYDSLEFLATLKTLHYRLQKEKEVHHVGIQLLMIDSIGPFHWVDRGSTF 180

Query: 181 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDR-SSDIVRREKSLSE 240
            PL G  RK  SL ++ +A V+++KKLLLVHP +V+A+K  I G+    D V++ KSL +
Sbjct: 181 FPLGGNKRKCLSLQSVFDAVVQDIKKLLLVHPMLVMATKEIILGNAYGGDEVKQNKSLLD 240

Query: 241 TES-RHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPS 300
               R+  ++  Q+ YREYMPS WQSFVTH++ VR SD+++ +   E  S+Y SEWLLPS
Sbjct: 241 ASGLRNLASNTQQLPYREYMPSVWQSFVTHKILVRASDDHMPIRHYEEHSVYLSEWLLPS 300

Query: 301 LGVLDKFIVKN 310
           +   DKF VK+
Sbjct: 301 ISFRDKFTVKD 309

[Close]
BLAST of CmoCh04G019720 vs. TrEMBL
Match: A0A059AAZ1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00844 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.2e-91
Identity = 174/319 (54.55%), Postives = 227/319 (71.16%), Query Frame = 1 

Query: 2   ALRQWIDGDETAAEMLTRVHKERTSLLVP-PLHRVPLHVGNVVELVGPSGSAKTQILIQA 61
           A + WI+GDE+A +ML R    R SL +P PLHR+PL  GNVVE+ GPS SAKTQ+LIQ 
Sbjct: 9   ATKSWINGDESARQMLGRAQASRPSLSLPAPLHRIPLRAGNVVEIAGPSPSAKTQLLIQT 68

Query: 62  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 121
           AV+CILPKE NG+ YGGL  SV+F+DLDCR D+ RL ++L+ RI++ NG     + + + 
Sbjct: 69  AVSCILPKERNGVHYGGLGHSVLFVDLDCRFDVLRLVEMLRHRIVQVNGCSCTADDEEIL 128

Query: 122 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 181
              +R+F YIRCYDS E LA LKT+HH+L+KE++  GI  HLLMIDSIGA+HWVDR S+S
Sbjct: 129 KLSMRQFSYIRCYDSCELLAALKTLHHRLEKEKESNGIGGHLLMIDSIGAFHWVDRASTS 188

Query: 182 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK--SLS 241
           LPL G NRK  SL N+LE  VE+++KL+  HP +VI +KATI G   +D  R  K    +
Sbjct: 189 LPLGGKNRKYLSLQNVLEVVVEDLRKLMSAHPMLVIVTKATIVGTTGNDFRRNYKRWPSA 248

Query: 242 ETESRHGKTDG-GQVLYREYMPSAWQSFVTHRVFVRGSDEYLTV-SSCEHQSIYFSEWLL 301
            T     + +G  +  +REYMP  WQSFVTHR+ VRGSD+++ +  S E+ + Y SEWLL
Sbjct: 249 GTFDASSELEGLREPYFREYMPPIWQSFVTHRILVRGSDDHIAMPKSQENNTAYVSEWLL 308

Query: 302 PSLGVLDKFIVKNAGVFMV 316
           P L  LDKF+V+NAGVF+V
Sbjct: 309 PRLNFLDKFVVRNAGVFLV 327

[Close]
BLAST of CmoCh04G019720 vs. TrEMBL
Match: A0A0D2VD57_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G099200 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.3e-90
Identity = 174/333 (52.25%), Postives = 230/333 (69.07%), Query Frame = 1 

Query: 4   RQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVN 63
           + W+  DE+A EML RV  ER  LL+PPLHRVPL VGNVVELVGPS S+KT ILIQAA+ 
Sbjct: 6   KAWLVEDESAREMLDRVLTERPFLLLPPLHRVPLRVGNVVELVGPSSSSKTHILIQAAIT 65

Query: 64  CILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEG-NGSGDWGNF------ 123
           CILPK W G+ YGGL  S +FIDLDCR D+ R S++L  RI+E  NGS            
Sbjct: 66  CILPKLWKGVSYGGLGHSAMFIDLDCRFDVLRFSELLNHRIMEAANGSSSKVGCHEKDSE 125

Query: 124 ----------DALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMID 183
                     + L+  C++RF YIRCYDS EFLATLKT+H++LQKER+  G+ +HLL+ID
Sbjct: 126 AQFARMKPYNEELFALCMKRFLYIRCYDSSEFLATLKTLHYRLQKEREVHGVNVHLLLID 185

Query: 184 SIGAYHWVDRVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDR 243
           SIGA+HWVDR SSS PL   NRK + L N+ EA V+E+++LLLVHP +V+A+KA + G++
Sbjct: 186 SIGAFHWVDRGSSSFPLECDNRKSWHLQNVSEAVVQEIRRLLLVHPMLVMATKAVVLGNK 245

Query: 244 --SSDIVRREKSLSETESRHGK--TDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVS 303
             ++++    +  S  ++ + +  T   Q+ YREYMP+AWQSFVTHR+ VR +D+ L   
Sbjct: 246 YSTNELTWNYRKWSAVDNPYSRNITSDQQLPYREYMPAAWQSFVTHRILVRATDDDLVNG 305

Query: 304 SCEHQSIYFSEWLLPSLGVLDKFIVKNAGVFMV 316
             ++ SIY  EWLLP L  LDKF V++ GVF++
Sbjct: 306 EHQNNSIYLLEWLLPPLNSLDKFTVRDTGVFIL 338

[Close]
BLAST of CmoCh04G019720 vs. TrEMBL
Match: D7SWK6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03100 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 2.2e-90
Identity = 176/324 (54.32%), Postives = 229/324 (70.68%), Query Frame = 1 

Query: 16  MLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRY 75
           ML+RV  ER+ +L+PPLHRVPL +GNVVE+ GPS SAKTQILIQAAV CILPKEW G+ Y
Sbjct: 1   MLSRVSAERSLMLLPPLHRVPLRLGNVVEIAGPSPSAKTQILIQAAVYCILPKEWRGVHY 60

Query: 76  GGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGD----------WGNF--------- 135
           GGLE  V+FIDLDCR DI  LSQ LK R++E +GSG+          WG+          
Sbjct: 61  GGLEHLVMFIDLDCRFDILCLSQSLKHRLMETSGSGNKVNWEQNDDPWGSGTEEPNIGYD 120

Query: 136 DALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDR 195
           + L+  C+RRF YIRCYDSFEFLATLKT+ ++LQ+ R+  G+  H LMIDSIGA++WVDR
Sbjct: 121 EELFAACMRRFLYIRCYDSFEFLATLKTLRYRLQRARETHGVTAHFLMIDSIGAFYWVDR 180

Query: 196 VSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGD--RSSDIVRRE 255
            S+SL L   +RK  SL ++ E  VEE++KLLLVHP +V+A+KATI GD   ++++ R  
Sbjct: 181 ASTSLHLESNSRKRLSLQSISETVVEEIRKLLLVHPMLVLATKATILGDTYSTNEVKRTS 240

Query: 256 KSLSETESRHGKTDGG---QVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYF 315
             LS  +  + +T  G   ++ YRE+MP  WQSFVTHR+ VR +D+    S  + +SI+ 
Sbjct: 241 MKLSSNDPSNLRTVTGGPQKLSYREFMPLVWQSFVTHRILVRAADDDPANSKYQSRSIFL 300

[Close]
BLAST of CmoCh04G019720 vs. TAIR10
Match: AT5G64520.1 (AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2))

HSP 1 Score: 315.5 bits (807), Expect = 3.8e-86
Identity = 160/328 (48.78%), Postives = 227/328 (69.21%), Query Frame = 1 

Query: 4   RQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVN 63
           R WI GDETA +ML+RV K+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++
Sbjct: 7   RSWIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAIS 66

Query: 64  CILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGN--GSGDWGNF----- 123
           CILPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+ N  G+G W        
Sbjct: 67  CILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNV 126

Query: 124 ---------------DALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLH 183
                          + LY +C++RF Y+RCYDS E L++LKT+H+++Q +++  G ++ 
Sbjct: 127 KSCKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQ-QQEACGSQVG 186

Query: 184 LLMIDSIGAYHWVDRVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKAT 243
           +LMIDSIGA+HW DR+SSSL L  +NRK  SL N++E  V+E+KKLLLVH  +V+A+K T
Sbjct: 187 VLMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGT 246

Query: 244 IFGDR-SSDIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLT 303
           I+ ++  ++   R+ S ++  S +  +   Q  +RE+MPS+WQ+FVTH++ +R S +Y +
Sbjct: 247 IYEEKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQS 306

Query: 304 VSSCEHQSIYFS-EWLLPSLGVLDKFIV 308
           + + +   + +S EWL P L  +D+FIV
Sbjct: 307 LQTGQQNLLAYSLEWLQPQLSRIDRFIV 333

[Close]
BLAST of CmoCh04G019720 vs. NCBI nr
Match: gi|659113947|ref|XP_008456836.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 541.2 bits (1393), Expect = 1.2e-150
Identity = 270/321 (84.11%), Postives = 287/321 (89.41%), Query Frame = 1 

Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+A+EML RV KERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEG--NGS---GDWGN 120
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDI+RL QVLKLRILE   NGS   GD  N
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180
           FDALY TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R+SSSLP WG+NRKGFSLAN+LEAAVEEV+KLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300
           SLSE+E RHGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L  SSCEHQ  Y SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

Query: 301 LPSLGVLDKFIVKNAGVFMVP 317
           LPSLG +DKFIV NAGVF VP
Sbjct: 301 LPSLGFVDKFIVTNAGVFSVP 321

[Close]
BLAST of CmoCh04G019720 vs. NCBI nr
Match: gi|778701936|ref|XP_011655113.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 537.7 bits (1384), Expect = 1.3e-149
Identity = 268/321 (83.49%), Postives = 287/321 (89.41%), Query Frame = 1 

Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDE+A+EML RV KERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEG--NGS---GDWGN 120
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDI+RL QVLKLRI+E   NGS   GD  N
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180
           FDALY TCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R+SSSLPLWG+NRKGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFGDRSSD V+R+K
Sbjct: 181 RISSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDK 240

Query: 241 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300
           +LSE+E +HGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L +SSCEHQ  Y SEWL
Sbjct: 241 TLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWL 300

Query: 301 LPSLGVLDKFIVKNAGVFMVP 317
           LPSLG LDKFIV NAGVF VP
Sbjct: 301 LPSLGFLDKFIVTNAGVFSVP 321

[Close]
BLAST of CmoCh04G019720 vs. NCBI nr
Match: gi|659113945|ref|XP_008456835.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 529.6 bits (1363), Expect = 3.6e-147
Identity = 264/314 (84.08%), Postives = 281/314 (89.49%), Query Frame = 1 

Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+A+EML RV KERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEG--NGS---GDWGN 120
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDI+RL QVLKLRILE   NGS   GD  N
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180
           FDALY TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R+SSSLP WG+NRKGFSLAN+LEAAVEEV+KLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300
           SLSE+E RHGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L  SSCEHQ  Y SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

Query: 301 LPSLGVLDKFIVKN 310
           LPSLG +DKFIV N
Sbjct: 301 LPSLGFVDKFIVTN 314

[Close]
BLAST of CmoCh04G019720 vs. NCBI nr
Match: gi|778701932|ref|XP_011655112.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 526.2 bits (1354), Expect = 4.0e-146
Identity = 262/314 (83.44%), Postives = 281/314 (89.49%), Query Frame = 1 

Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDE+A+EML RV KERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEG--NGS---GDWGN 120
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDI+RL QVLKLRI+E   NGS   GD  N
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180
           FDALY TCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R+SSSLPLWG+NRKGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFGDRSSD V+R+K
Sbjct: 181 RISSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDK 240

Query: 241 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300
           +LSE+E +HGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L +SSCEHQ  Y SEWL
Sbjct: 241 TLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWL 300

Query: 301 LPSLGVLDKFIVKN 310
           LPSLG LDKFIV N
Sbjct: 301 LPSLGFLDKFIVTN 314

[Close]
BLAST of CmoCh04G019720 vs. NCBI nr
Match: gi|659113949|ref|XP_008456837.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo])

HSP 1 Score: 474.9 bits (1221), Expect = 1.1e-130
Identity = 246/314 (78.34%), Postives = 261/314 (83.12%), Query Frame = 1 

Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+A+EML RV KERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEG--NGS---GDWGN 120
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDI+RL QVLKLRILE   NGS   GD  N
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180
           FDALY TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+ID         
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID--------- 180

Query: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
                       RKGFSLAN+LEAAVEEV+KLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 ------------RKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300
           SLSE+E RHGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L  SSCEHQ  Y SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 293

Query: 301 LPSLGVLDKFIVKN 310
           LPSLG +DKFIV N
Sbjct: 301 LPSLGFVDKFIVTN 293

The following BLAST results are available for this feature:
BLAST of CmoCh04G019720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
XRCC2_ARATH6.8e-8548.78DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2[more]
XRCC2_HUMAN6.9e-2128.07DNA repair protein XRCC2 OS=Homo sapiens GN=XRCC2 PE=1 SV=1[more]
XRCC2_MOUSE3.4e-2030.88DNA repair protein XRCC2 OS=Mus musculus GN=Xrcc2 PE=2 SV=1[more]
BLAST of CmoCh04G019720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMH0_CUCSA9.3e-15083.49Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289900 PE=4 SV=1[more]
M5XPA7_PRUPE7.5e-9959.16Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014924mg PE=4 S... [more]
A0A059AAZ1_EUCGR1.2e-9154.55Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00844 PE=4 SV=1[more]
A0A0D2VD57_GOSRA1.3e-9052.25Uncharacterized protein OS=Gossypium raimondii GN=B456_013G099200 PE=4 SV=1[more]
D7SWK6_VITVI2.2e-9054.32Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03100 PE=4 SV=... [more]
BLAST of CmoCh04G019720 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G64520.13.8e-8648.78 homolog of X-ray repair cross complementing 2 (XRCC2)[more]
BLAST of CmoCh04G019720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113947|ref|XP_008456836.1|1.2e-15084.11PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo][more]
gi|778701936|ref|XP_011655113.1|1.3e-14983.49PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus][more]
gi|659113945|ref|XP_008456835.1|3.6e-14784.08PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo][more]
gi|778701932|ref|XP_011655112.1|4.0e-14683.44PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus][more]
gi|659113949|ref|XP_008456837.1|1.1e-13078.34PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
GO:0008094DNA-dependent ATPase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0006412 translation
cellular_component GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component GO:0005657 replication fork
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G019720.1CmoCh04G019720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51, C-terminalPFAMPF08423Rad51coord: 38..175
score: 3.
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROFILEPS50162RECA_2coord: 17..222
score: 20
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 38..276
score: 1.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 37..179
score: 1.77
NoneNo IPR availablePANTHERPTHR22942RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBERcoord: 1..236
score: 1.4E-91coord: 254..299
score: 1.4
NoneNo IPR availablePANTHERPTHR22942:SF36DNA REPAIR PROTEIN XRCC2 HOMOLOGcoord: 254..299
score: 1.4E-91coord: 1..236
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G019720CmaCh04G018730Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G019720Cla016886Watermelon (97103) v1cmowmB727
CmoCh04G019720ClCG11G001140Watermelon (Charleston Gray)cmowcgB634
CmoCh04G019720CSPI05G12560Wild cucumber (PI 183967)cmocpiB740
CmoCh04G019720Cp4.1LG01g16600Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G019720CsaV3_5G013190Cucumber (Chinese Long) v3cmocucB0884
CmoCh04G019720Cla97C11G207550Watermelon (97103) v2cmowmbB710
CmoCh04G019720Bhi07G000125Wax gourdcmowgoB0906
CmoCh04G019720CsGy5G009950Cucumber (Gy14) v2cgybcmoB661
CmoCh04G019720Carg25932Silver-seed gourdcarcmoB0478
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G019720Bottle gourd (USVL1VR-Ls)cmolsiB661
CmoCh04G019720Cucumber (Gy14) v2cgybcmoB653
CmoCh04G019720Melon (DHL92) v3.6.1cmomedB721
CmoCh04G019720Watermelon (97103) v2cmowmbB707