CSPI05G12560 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G12560
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	DNA repair protein XRCC2 like
Location	Chr5 : 11823272 .. 11829440 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGGTCTGGCCCCAATCCATTAGGGTATTTGGCTTTCTCTTGATCAAAAGATCGATCCTCCAACTCCTCCTCTTGCATTCAAGACACCATGTTTCATTTAATTAGATAATTCAATTTTCCTCCCGAGTGTCCTTCCCAAAGGAAGTTTCTTAATAAACGCTCCACTGTTTGAGACACATTTGTCGGCATTAAAAAGATCGATATATAATATTGTGGGAATATGGGAAAGAACTGACTTACTTGAAGTGGCGACCTCCTCGTGATAGATTGTATCTTTTCCATTTCTCCAATTTTTCTTGAATTTTTTCAATTACCTGCTGCCAAAAAAGAGCTTGCTTAGGATAACCACCAAGGGGCAGCCCTAGGTAACAGAGTGGAAGATGAGAGGCTTCACAGTTCAGCTTTGATGCCTCTTCAAACAGCTCATTTTCTTCTATGTTTAAACCTCAAAGCACAGATTTTCCCAATTAATCTTCTGTGTGAAGCTCCACTCAAAGAATTCAATTGTCTTCTTAAGAGTTTCCAGCATTCCATCTTTTCGTATTTACAAAAAATTAATGTGTCATCAGCGATTTGAAGGCAATGGACATGAATACTGATTTTTCCCACCTTGGAACCTTCAAACTTTCCTTTTTCATATAGCCTATTTAACAAGGCACTTAACATTTTGCTGATTAATAAGAAAATGAAGGGTGAAAGTGGGTCTCCTTGAATTCTTCTTGTGGCTTTGATTCTTCCTCTTGGTCTCCCGTTAATGAATATTGAATATTTTGGATTAGAAATACAGCCCATGATCCATGTGATCCATCTAGTATCAAATTTTTTTTCCATGAGAATTTTCTCAAGGAACTCCCAATCTACTCTATCAAAGTCCTGTTCCAAATCCAATTTTAGAATCCATCCTTTCTTCTTTTTAGCACGGTACTCCTCCACGGCTTCATTTGCTATAAGAATTGGATTCAAGATTTGCCTTCCTTCAATGAAAGTGCTGTGTGGGGGTGATTACACTAGGCATGATTCTTTTGAGGTGTTCGGCTAGCACCTTAGCAACAAGCTTAGATGTTAAAGTGGTTAAGCTGATTGGTCTAAAGTCTTGAGCACAGACAGAATCTTCTTTTTTCTGAATTAGGCAGATAAAGTTTCTTTGACGCAAGAGTTTAGCTTCTCATTCCTGAAAAAATCCTCAAACAATTTCTCAAAGTTAACCTTAGTTAAGGGCTTAAAATTCCTTTCCTTGACAAGGCATGCGTTATCTTCCTGGCCAATAAATTTTGTAGTGCTATTTTCTTTTCAATGACGTGATTATTTCTTATTATAAAAAGGAAAAAAGAAAAAGAAAAACTCTTCCCCCTGATGCTTCTTGTAAGTATCCTCAATAGTAAAAGAAACCTAAACTACACTACATGCAAGCCAACGGTAACTCTTTACTCATGCACATGTGATTATCATCCAAAAAGAAATGTGTTCCAACAATGTACAATTGTATTCCTAGTGTTCTGACTATTTTAGATATTTACTCTGCAGGAAAGGCTTTTCTCTTGCGAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTACTAGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACGCAGTTAAACGGTGAGTTTAAGGCTGTAAGGGATTTCTTTTTTCTGTGAAACAAAAAATTACGTGACAGTCTTAACTCTTGAGGAATTATGTTTCTTGTACTTTACTGTTCAATTCAACTAGAATATTTCACTTTTGGTGATCCATAGATTTGCCTGCGTATTTCACATGGTCATGTATGTTGATTTTATGGAATTAATCTCTATTTCATTAATTATTTAGTAGAGGTACAAGTTTATATATAACCATAGAAAAATACACTTAAGGAAATAATATCAAATAATATCTCCGGAATAATATCACCTAAGAATAATCTAATTATATTAATACCCTCCCTCAAACTCAAGGTTGAAATCACAAACTTGAGTTTGCTAAGAACTAAGAAAAGAAACAATATATCTAGAATAGAATAAAAAACCCGAAGAACAAACACACAAAGAACTTCTAGGTTAGAACAAACCCACGAAAAACTTCCGGGATAGAAACATAGATCCTCGTATAGAGATCTATAACAGAACCTAGGAAGAACGAAACAAGAACTTCGGGGGGCAAAATGAAAGAGCAAAACTGAAGCAAAGTAGAATCAAATCAAGACGAAAACAGGGTCGGAATTGGACAGGAGCGTTTTGTCGGATCAGAATGGAACCGAACGAAGTAAACTAGAGCAAGTCAGAATCACACTAAACGGGAAATTTGGGGCGAACAGAACAAAAACTGTACTGAATGGAGCAGAGAGGCTTAGCGGATCTGAACAAAAACAGAATCGAGGCGTCGTTGGATCTGGGCTTCGATCTAAACTTCGAAGGCAGACATGAAGAATGGGTCTGAACAAAATCAGACAGGTCTGGAACAGATTGGAGGCAGACGCAAGGATCTGAGGACATGGGGTTTCATGGATTTTGTCGGGACAACATAAGAAGATGGAGCAACGGCAACGAAACGCAGCGGCAAGCGGAGCTTCTTGGACGACGGACAAAACCAAAACTCTTCGGCTGGGCGTTCGGCTTCAACTGACTAAGGTTCAATCGGCTGCTTGGCTAACGGAAAAACAAGAGGTCGGACGGAGAACTATGAAGGAGATGGTCGGGAAGCAAGGGCGGCGGATGCTAGTGAAAACGAATGGGGTTTCTGGGGTTTGGATGGTGGCAGATTTGAGCAGCAATGAGCGACAAAGGGAAGGTGCAACGGCGGCGGATTTGCAGATCTAAGGGGCGGCTTCAGCTAATGGAGGATGATTCTGAAGGTCGGATCTGGAACATAGGGGATGGTTCTGCCTCTGTCGATGAATGATCAACGGAGGCAGAGAACGGGATGTGGCAGCTAGAATTCAATGAGACAGAAAAACCTAAAGCTCTGATACCATGTTGATTTTATGGAATTAATCTCTATTTCATTAATTATTTAGTAGAGGTAAAAGTTTATATATAACCATAGAAAAATACACTTGAGGAAATAATATCAAATAATATCTCCAAAATAATATCACTTAAGAATAATCTAATTATATTAATAATGTACTTTGACGACTTGTTGCAATTCTCTACGTCTATTATGCATAAAATTGCTTGAAGACTTGTTAGCATATTTTGAGTTCTAAGATGTGAAGCTACTTATCACCAATTCTTTTGTCATTCTTGTCCATTTTTTGGTTGCTTCATTTTCATTCTCTTTTCTTGGATAGGAAACCACTAACTTCACTGTTTCTTCTATAAAGAATAAAGAGAATGATGTTATGCTAGCGTGACCTTGATTTTCAAATTGATCAAATTGTTAGGTATTGATATGAAACAACAATTGTAAGTTTCAGTTTAAATGTGCTAGGAGCATAAGGGTTATCTCTACCTTGGTTTATCATATTGAACTTTAGAATATGAATGTAGATCTCAACTAATCTTCTAATTGTGGGAGAATTTGCAACTAACTGGTCCAACATTAGTTTCGCCTTTTATATTATTGAAAACCTCCGACTTGGATTCAGTGAGAAATAGTTAAACTATGGGCTTTTTGTTTCAATAATTACGTTTCTATGCTTCTTTAGATGATATGACATATTAACCCTGGCGAATTTGTCAGTGATAAAACTTTATCAGAGTCAGAATTAAAGCATGGGAAACCCGATGGTGGACTAGGTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGGTAATAAAGATAACTAGTCTTTAACCATGAAACATAAAGTATTGCCTGAATGAACAGGGAGATATTTACAAAGTTAAATAACATCATGGTTCTAATTTCTAAAGACAGTGGCCATAAAATATAGGGCTATTTTCAAATATAACAAAATGAACAAAAATATTTACAAAATATCAGTCTGTCTATGATGAACCTTGTAAACCAAGATAGACTACTATTTGTATCTATAATAGTCTAACTTGGTCTTGTAGACACATATAGTAGTCTATCTTAATCTATTATAAATAGATTGTGATATTTTGCTATATTTATAAATATTTTAATAAGTTTTGTTATTTAAAATAATTTTCCTAAAATATAGGATAGTGTGTTGGGGATAACTAAAATTCTGTTTAATTATTATTTGATTTTTGCTTTTTTCTTTTCAAAATCTATAACTTCTCCCACGTATGAAAATTCTTGCTTTGTTATCTATCTATGAAGTGTTTTGAAAGTCCAACAAAAGGAAAAAGAGTATTGTTTGTTATGTTATCATCACCTTCCTCTGAAATCAATTCATCATTTAGTGATTTGCTGGATGCATTGTCCTCACCATTACTCACGGCACATTTCTCTCCCACTATCCTCATCATTACTTTGTTCTATATTTTGGAATCCGATGCTATAGGTTCTATTCCATAGCTATTTGGCTGTTTGTTCGTTGTTTTTTAAAATTAAGCTTATAAATACTCTATCTTTTGATTTCTTTATTTTGTTATCTAGTTTTATGAGTGTTTTCAAATTCCTAGCCAAATTATGAAAACTTAAATTTCTTTATTTCTTTGGACTGCTACCCTTTGTGCGATCTTGTGGATTTTATAGGGAGAACGGAACAATAAGATTTGTAGAGGTATGGAGAGGGATCCTAAGGATCGTTGGTCTCTTGTTCGTTGTCATGTTTTCCATTGGAATTTGTTATCGAGAGTGTTTTGTAATTATTCTTTGGGTCATATTAACTTTTGCTAGAATCCTTTATTGCAACGTTATTTTCTCGAGGCTTCGCTATTGCTGCGCCTTCTAATTTTTTCATTATCTCTCACTGAAATTGTCTATTTTATCAAGAAAAAAGTAAACTTAAAAAAACGATTTTTAAAATCTTGTTTTTGTTTTCTTTTAGAATTTAGCTAGAAATTCTAATCTTAAATTACAAAATGAAAGAAAAAAATATAATTAAATGGTTATCAAACGTGAAAAATCATACAAAACATCATCTAACTAGATTCCATTTGAAGATTTGAGTACCACATTCTATTTTTCTAGACAAATAATGGAAGACTAGTGAAATTTCAGTGAAGATGCCATGTGAATAAATTTTATTCCATTTAAGTGTGGTTCCATAGTACAGGATCCGGGTGATATTCTAAAATTACCTATGAAAGAGATTCATTTGTTTGGGTTTTTGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAACTCAGGTCTGAATTACATATTATGCTCAAAAGTCTAATGTGGTCTGATTCACTTTCTGTATCAGTCATTAATCTGATACTTTTTTGTTGCCTTTCAGATGAACATCTTAAATTGAGCAGTTGTGAGCATCAACCAACATATTCTTCTGAATGGCTGCTACCATCCCTAGGTTTCCTCGATAAATTTATTGTGACAAATGTGAGAAACCAAGCTATTTCTCTTAAGCTACTCGTATATAATAAAGTGCCATGAAATCTAGAAGCTAAAGGTATATTGATTTGATATTAAAATACTGATATCATAAATTTTGGAAGATAAAGTTGAACCGCTTACTCTTTTTATTTTCATGAAGTAAGATGTGTCAATCTTGATAACAAAAAAGATGTTTATTTGGTCCCTTTCTTCTAGAATTTGATTCGTTTTGATTCTTATACTTTCAAAATGTTATTTTTAGTTCATATACTTTTAACTTTCATCCATTTTAGTTTAGGTTCATTTTTGTTGTTTTATTATTTTAATTTATTTTGGTTCTTAATTTCAAAAAGTCATTATTTTGATATTTTCATTTTATTTTCAAGTGATTCCTTTTTAGAAGTTCTAACCAAAATCAATCATTAAAGAACATTTTGAAAGTAGAAGAGTAGAGAGAACCAAAGTTAAAACTCAGAAGTACTGGGACTCAAATAAACATTTAGAAAATTGGGAAGCAAAATAAACACTAAAATATGATTTAAACCCAAAAAAAGAAAAAGGAAAAAGAAAGGAAACTATCATTAAACTCAACTTTAAATGAATAGATTGTGGTATTTCCGTAAGTAAAACTAACATGAGAAATTTGGATTTTACATTGTACCTGCAGGCTGGCGTCTTTTCAGTACCC

mRNA sequence

ATGGGTAGGTCTGGCCCCAATCCATTAGGGAAAGGCTTTTCTCTTGCGAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTACTAGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACGCAGTTAAACGTGATAAAACTTTATCAGAGTCAGAATTAAAGCATGGGAAACCCGATGGTGGACTAGGTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAACTCAGATGAACATCTTAAATTGAGCAGTTGTGAGCATCAACCAACATATTCTTCTGAATGGCTGCTACCATCCCTAGGTTTCCTCGATAAATTTATTGTGACAAATGCTGGCGTCTTTTCAGTACCC

Coding sequence (CDS)

ATGGGTAGGTCTGGCCCCAATCCATTAGGGAAAGGCTTTTCTCTTGCGAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTACTAGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACGCAGTTAAACGTGATAAAACTTTATCAGAGTCAGAATTAAAGCATGGGAAACCCGATGGTGGACTAGGTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAACTCAGATGAACATCTTAAATTGAGCAGTTGTGAGCATCAACCAACATATTCTTCTGAATGGCTGCTACCATCCCTAGGTTTCCTCGATAAATTTATTGTGACAAATGCTGGCGTCTTTTCAGTACCC

Homology

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BLAST of CSPI05G12560 vs. Swiss-Prot
Match: XRCC2_ARATH (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-16
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 1


Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK-- 70
           K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G   
Sbjct: 213 KSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIY-EEKYPANENNRKVSSNDHFSGNVA 272

Query: 71  PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQ-PTYSSEWLLPSLGFLDKF 130
                  +RE+MPS+WQ+FVTH++ +R S ++  L + +     YS EWL P L  +D+F
Sbjct: 273 SKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQTGQQNLLAYSLEWLQPQLSRIDRF 332

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BLAST of CSPI05G12560 vs. TrEMBL
Match: A0A0A0KMH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 313

Query: 131 NAGVFSVP 139
           NAGVFSVP
Sbjct: 314 NAGVFSVP 321

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BLAST of CSPI05G12560 vs. TrEMBL
Match: A0A059AAZ1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00844 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.9e-24
Identity = 69/141 (48.94%), Postives = 84/141 (59.57%), Query Frame = 1


Query: 8   PLG----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDK------ 67
           PLG    K  SL NVLE  VE++RKL+  HP +VI +KATI G   +D  +  K      
Sbjct: 190 PLGGKNRKYLSLQNVLEVVVEDLRKLMSAHPMLVIVTKATIVGTTGNDFRRNYKRWPSAG 249

Query: 68  TLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKL-SSCEHQPTYSSEW 127
           T   S    G  +     +REYMP  WQSFVTHR+ VR SD+H+ +  S E+   Y SEW
Sbjct: 250 TFDASSELEGLREP---YFREYMPPIWQSFVTHRILVRGSDDHIAMPKSQENNTAYVSEW 309

Query: 128 LLPSLGFLDKFIVTNAGVFSV 138
           LLP L FLDKF+V NAGVF V
Sbjct: 310 LLPRLNFLDKFVVRNAGVFLV 327

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BLAST of CSPI05G12560 vs. TrEMBL
Match: I1LPM0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G029200 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 1


Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDK-TLSESELKHGKP 70
           K   L  V EA V+ ++KLL VHP ++IA+K+ IFG+R S A    K  + E   K+   
Sbjct: 182 KKLFLQTVSEAVVQNIKKLLQVHPMLIIATKSVIFGNRYSTASNEVKGNMEERCSKNVTR 241

Query: 71  DGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIV 130
           +    LYREYMPS WQSFVTHR+ VR+SDEH   ++ ++   Y  EWLLP L F DK +V
Sbjct: 242 NHQNYLYREYMPSVWQSFVTHRILVRSSDEHPVTTNNQNSSFYLLEWLLPRLSFPDKIVV 301

Query: 131 TNAGVF 136
            +AGVF
Sbjct: 302 KDAGVF 307

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BLAST of CSPI05G12560 vs. TrEMBL
Match: A0A0K9QTC3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_143750 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 65/143 (45.45%), Postives = 89/143 (62.24%), Query Frame = 1


Query: 8   PLG----KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRS-SDAVKRDKTLSES 67
           PLG    K FSL +V EA V E++K L V P +V+A+KAT+F D+S  + +KR      S
Sbjct: 188 PLGSNNRKIFSLQSVTEAVVREIKKFLRVQPMLVLATKATVFADKSVPNDIKRPFRKWSS 247

Query: 68  ELKHGK------PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSC-EHQPTYSSE 127
           E   G+      P+  L  +REYMP AWQSFVTHR+ VR S +  + S+C   +  Y  +
Sbjct: 248 EDAAGQHTMESSPENAL--HREYMPLAWQSFVTHRISVRPSSQEYRASNCTTDEQVYLGQ 307

Query: 128 WLLPSLGFLDKFIVTNAGVFSVP 139
           WLLPSLGF DKF++ + G+ +VP
Sbjct: 308 WLLPSLGFKDKFVIRDVGIIAVP 328

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BLAST of CSPI05G12560 vs. TrEMBL
Match: D7SWK6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03100 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-22
Identity = 66/132 (50.00%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDR-SSDAVKRD--KTLSESELKHG 70
           K  SL ++ E  VEE+RKLLLVHP +V+A+KATI GD  S++ VKR   K  S       
Sbjct: 193 KRLSLQSISETVVEEIRKLLLVHPMLVLATKATILGDTYSTNEVKRTSMKLSSNDPSNLR 252

Query: 71  KPDGGLGL--YREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLD 130
              GG     YRE+MP  WQSFVTHR+ VR +D+    S  + +  + SEWL+PSL F D
Sbjct: 253 TVTGGPQKLSYREFMPLVWQSFVTHRILVRAADDDPANSKYQSRSIFLSEWLMPSLNFSD 312

Query: 131 KFIVTNAGVFSV 138
           KFIV +AGVF V
Sbjct: 313 KFIVRDAGVFVV 324

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BLAST of CSPI05G12560 vs. TAIR10
Match: AT5G64520.1 (AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2))

HSP 1 Score: 87.0 bits (214), Expect = 9.6e-18
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 1


Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK-- 70
           K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G   
Sbjct: 213 KSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIY-EEKYPANENNRKVSSNDHFSGNVA 272

Query: 71  PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQ-PTYSSEWLLPSLGFLDKF 130
                  +RE+MPS+WQ+FVTH++ +R S ++  L + +     YS EWL P L  +D+F
Sbjct: 273 SKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQTGQQNLLAYSLEWLQPQLSRIDRF 332

[Close]

BLAST of CSPI05G12560 vs. NCBI nr
Match: gi|778701936|ref|XP_011655113.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 2.4e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 313

Query: 131 NAGVFSVP 139
           NAGVFSVP
Sbjct: 314 NAGVFSVP 321

[Close]

BLAST of CSPI05G12560 vs. NCBI nr
Match: gi|778701939|ref|XP_011655114.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 3.5e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD
Sbjct: 173 KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 232

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT
Sbjct: 233 GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 292

Query: 131 N 132
           N
Sbjct: 293 N 293

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BLAST of CSPI05G12560 vs. NCBI nr
Match: gi|778701932|ref|XP_011655112.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 3.5e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 313

Query: 131 N 132
           N
Sbjct: 314 N 314

[Close]

BLAST of CSPI05G12560 vs. NCBI nr
Match: gi|659113947|ref|XP_008456836.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 118/128 (92.19%), Postives = 125/128 (97.66%), Query Frame = 1


Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDKSLSESELRHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQPTYSSEWLLPSLGF+DKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWLLPSLGFVDKFIVT 313

Query: 131 NAGVFSVP 139
           NAGVFSVP
Sbjct: 314 NAGVFSVP 321

[Close]

BLAST of CSPI05G12560 vs. NCBI nr
Match: gi|659113945|ref|XP_008456835.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-57
Identity = 111/121 (91.74%), Postives = 118/121 (97.52%), Query Frame = 1


Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDKSLSESELRHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQPTYSSEWLLPSLGF+DKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWLLPSLGFVDKFIVT 313

Query: 131 N 132
           N
Sbjct: 314 N 314

The following BLAST results are available for this feature:

BLAST of CSPI05G12560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XRCC2_ARATH	1.7e-16	38.52	DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2	[more]

BLAST of CSPI05G12560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMH0_CUCSA	1.6e-66	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289900 PE=4 SV=1	[more]
A0A059AAZ1_EUCGR	5.9e-24	48.94	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00844 PE=4 SV=1	[more]
I1LPM0_SOYBN	1.5e-22	48.41	Uncharacterized protein OS=Glycine max GN=GLYMA_12G029200 PE=4 SV=1	[more]
A0A0K9QTC3_SPIOL	1.5e-22	45.45	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_143750 PE=4 SV=1	[more]
D7SWK6_VITVI	1.9e-22	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03100 PE=4 SV=...	[more]

BLAST of CSPI05G12560 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64520.1	9.6e-18	38.52	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]

BLAST of CSPI05G12560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701936\|ref\|XP_011655113.1\|	2.4e-66	100.00	PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus]	[more]
gi\|778701939\|ref\|XP_011655114.1\|	3.5e-62	100.00	PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis sativus]	[more]
gi\|778701932\|ref\|XP_011655112.1\|	3.5e-62	100.00	PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus]	[more]
gi\|659113947\|ref\|XP_008456836.1\|	1.0e-61	92.19	PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]	[more]
gi\|659113945\|ref\|XP_008456835.1\|	1.5e-57	91.74	PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008094	DNA-dependent ATPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G12560.1	CSPI05G12560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22942	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	coord: 76..121 score: 1.8E-18coord: 17..58 score: 1.8
None	No IPR available	PANTHER	PTHR22942:SF36	DNA REPAIR PROTEIN XRCC2 HOMOLOG	coord: 76..121 score: 1.8E-18coord: 17..58 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G12560	ClCG11G001150	Watermelon (Charleston Gray)	cpiwcgB373
CSPI05G12560	Lsi11G001270	Bottle gourd (USVL1VR-Ls)	cpilsiB342
CSPI05G12560	MELO3C020032.2	Melon (DHL92) v3.6.1	cpimedB353
CSPI05G12560	CsaV3_5G013190	Cucumber (Chinese Long) v3	cpicucB299
CSPI05G12560	Cla97C11G207550	Watermelon (97103) v2	cpiwmbB377
CSPI05G12560	Bhi07G000125	Wax gourd	cpiwgoB509
CSPI05G12560	CmaCh04G018730	Cucurbita maxima (Rimu)	cmacpiB749
CSPI05G12560	CmoCh04G019720	Cucurbita moschata (Rifu)	cmocpiB740
CSPI05G12560	Cp4.1LG01g16600	Cucurbita pepo (Zucchini)	cpecpiB428

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G12560	Cucumber (Gy14) v1	cgycpiB551
CSPI05G12560	Cucurbita maxima (Rimu)	cmacpiB751
CSPI05G12560	Cucurbita maxima (Rimu)	cmacpiB772
CSPI05G12560	Cucurbita moschata (Rifu)	cmocpiB760
CSPI05G12560	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G12560	Melon (DHL92) v3.5.1	cpimeB373
CSPI05G12560	Watermelon (97103) v1	cpiwmB445
CSPI05G12560	Cucurbita pepo (Zucchini)	cpecpiB432
CSPI05G12560	Cucurbita pepo (Zucchini)	cpecpiB456
CSPI05G12560	Cucumber (Gy14) v2	cgybcpiB235
CSPI05G12560	Silver-seed gourd	carcpiB0205