Carg25932 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25932
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dna repair protein xrcc2 like
Location	Cucurbita_argyrosperma_scaffold_263 : 124843 .. 133178 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTGATAAGTCACACAAACGCAGGAGATTGGGGAAATTTTGATGCACTATATACTACATGCCTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGGTACATTTCTTCTTATTTAAAACAAAGTTAGCCTTCTTCATGCATTTCATTCGCATACCTTTTTTTAAGAAACAGATTTCATTAATAAATGAAATAACAAAAAGGAATAAAGCCTCAATCTATAAACCAAAGAAGTTGTTAAAACTATATGTAAAAAAATTAAATTTGACATGAACTTATAGTTTTCAGTTCAATGGTAGCTCTCTCCAATTCATATTGATTTCCACTTGTTGGGTTTGCAACCACAAGTGAGGACACTGTCAAATTGTATTTAATAGTAAATAGGTAAATATAGGAGCTTATTAGTCTTTTTTTCATTTATTGTAATTTTACTATTATTGGTTTAGGACTTCCATGTGTACTAATATATACTCTGCTATATAGATTATGTATTATCCTCTACTATACAAATCATGTATTATTCTCTACTATATAGACGATGTATTATTCTTCCATATTTGGTCTCACAATAACCCAAAACTAAATATACCATAACACATCAGCCTAAACTTTTGGGTTCAATGGTGATTTAACCGTGAATGAAAAAGCTTTCAATTGATGGATAAAAGGATATAATTACATAACAAGGGATAGCAAGATTCTCTATTGGTCTCCCTTCTAACTTCGTTTGCTACTTGAGATTTCCCCCTTTAAATTAAATCTTTGGAAAGCTAAGATCCCAAAGAATGCTAGAAAATGAATTACAAAGACACAATTGATGCAACCCTCAAAGTTTAGGAGTATAAATTGATTTTTTCTCAAAAAGTTACTAATTTGTAGTATGACGGAATGCTAAAAAACACTGAGTAACAATGAGTCAGCCTACCTTCATAATTGAAATCTCTTCCACTAGTCAATTTCATAATTTCCTCCATGATGGGCCACCAAAAAGAAGCAGTCTGGTGACCTCCTAGTGGTAGACCAAGATAAGGAAAAGTAAGGATTCAACCTTACAGTGAAGCCTGGAGGCTACAAGAGACAGCTTTGGTCTTCTATATTAATCCTCATATGGCAGATTTAGCTGAATTTATTCTAAAACCTGATAGGCATTCCAAAAACCTGGTGGCCGTTAAAAATTTCCCTCTGTTTTCTAATAAAAGAACTGTTTTAATTCAAATATCCAGCATCTTCAATCTCCTGTTTTTATCCACCTTTGTACTTCAAGTTGGCTCTCTATAATTTTCTGCAACCTCCATTGTGTACAATTTGTCTATTTAATTCTTTAGACCTTTTGAATTTCAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAATTCGGTTGCATCTACTCATGATCGACAGGTTTGTGCTAAAAATAATTTGGAACCTCGTGATGCGTCTCCTGCTAGATAGAGTATCCAATTTCTTCTTATTTGTCGATTTATTTCATGAACATAAAAGATAAAGATGATTGCATTCTTATGTTTTTTTTTTCTATCTTCCTCTGCCATGTCATTTATGCCAAAGGACTTTAAATTGGTTTTGCTACTAAGAGTACTGTAGAAAATACTCGTCTTAACGCACTTTCATTGTTCTTTTTTTTGGGGGGGGGGGGGGGGGGGGGACCCTTGCTTGGCTGCCAAGAGTTTAGGTGGCCATTAGATTGAAATTCCTCTAATAACCTTTGAAAGTCTTCTCGCAAAAAATACTAATCTTTCTAGAAAATTCAATTGTGTATCCATCAGGGCCTAACGCCTAATTCTTAGGTTTTTCATACCCATTCTTATTTCTTCTAGAGAAAATGGAGCAATAAGAACAGAATTTTCTTTTAATAAGAATATAAGAAGACACCGTAGACCAGCAAAGATTAGAAGGAATAGTACAATTGCCTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATAAAAAAGAGAACCCCAGAATTTCCTGCTCAAATTTTCTTTAAGCAAGAGGAGAAGCCCCAGTAATAGAAAACAGTTCTGCAATCAGATTTTTTCTTTTTTTAGCTGCCAAGAAATGATGAAAGCTTAATCAATGCAACTTACATTTTTAATCCAATTTCTTTCCTCAGAGAAATAAAACTCCATAAGTTCACCTTTAATCGCAATTCTGATGTTTAGCTCAGAGGAGATAACACATTAGTTTCTGATTTTGCATCAAAGAACTCCAGTTCAGGTATGAGACTTTGTTCCTTTCTTTTCCTTTCTGTTTCAAATTCAGCATATCATTTCTTGATATCTTCTATTAATTTTCTGAGCTTTGAACTAATAAAAAAAATCCAGCCCATCCTTGAGAACAATCTTGAACAAGGGATTTCTCTATAACTTTTCCATATTCCGAATGAATAAGCCAACTGTTGTAGAACTGAAAAGGGGAAGGACCCCAAATGAATGCTCCTGCGTCAAGTAACAATGGAAAATGATCTAAAATGTGCAAGCTTGTCTAGATACTCTGGAGTTATCAAACAAACCATTCCATATTTTTGGTCAATGATCTCTATTCTGCTGGAATAAAGCCACATTAAAATTTCTTCTCTTGAATTCTAAAAGCTGAACAATCCATGCAATTAGGAGTATGATAAACTAAACCCCCAAAATGCTGCCCAGTTTCTTCAAAACAATATCTTTTCCAGTAAGGCAAATGAAGCTTTTGCAAAGAAATCCAACCACCATATCCATATCAACTTAGGATGGGAACTATCATTTTGTGACCATTTCTCAATTTTCCGATGGAAATTACCAATTTACCTCCACTTACCCTCAAATTCAAAAACTGAAAATTCATCATTTAACTTCAAAAACTTATCTGCCATAAATGGATTGATTAAAACTTTGGATTGTAAATAAACTTCTAGAGAAAATTGAATATCCTTCCAAGAGCTCTGGGCTAGCAATCTGGATAACAAAAATGAATTGAAAAATCTTTCACCTACATCATTGTCTTTCCTAACTCAACATTAGAAAGGAGGAGTCTTCTAGGATGAAAACTAAGTGTGGGGCTGCAATAGACAAGAGCATTATAATTTTCTATTTTGAAAAAAAGGAAAAATCCCAAATCGATAAAAAGAAAAGCAAAAACATTAAGGTTAGAAAGGAATGGCCAAAGAATCTCCAAAGTTAGTAACTTGTAATGGCGGTTAAGAAAACACAAGGTTAAGCACAAAATTACATTTATTAGTGGCGACTAGTCAATGATGAAGCATAGCATGACCCACGACGAGATAGTCTAGCGATTATGTAACTACAATGATGGACTCCGGTGACAATGTGACCTATGTCGATGAATCCCTTCACCCTCAAGGTGAATCTCTTATGTGACGACGAGTCTCCCGATGGTGCCCAAATCTTGATGGGCGACACCTCCAACGTGCTACATATTTCCTACGACGGTGACACTAGACATGCCAAATCTTTGGTGAACACACCTACGACCAGCTACTCGTGACAGCCAACCTTTAGCATGACCTGTGTGCCTACAGCCCCCTGCGGCAGGCCATATTTGCAAATTTGAGGCCTCTCCTTGTGAAGGTTGAGACCTACGCCAAGCAGTCCAGTACTGTACATTAGTTTTCCTCGGTCACAGGGGACTTGCCATCTTCTCTATTATGGATTATCCTAGCAACAGCTCACTCGAGAAAGGGAACACAATAAATGGCTTTTTCATTTTCTTAGTCATAGGGATGGCACCATCTCCTCCACCTCTAAAACTCACAACCATTATCGATAGAAAGACCTATTTAATTGAGCTAGATGACAGATATAGGGAAACAAGAATAAAATTATCAATGATCACCAGAGACGAAGCCTTTTTCACATCACTCAAATGAGATTTTTTCCAATGGCCAATAACATCTTACCAGGCCCTACTATCAGCCCCACTGAATCAAAGTTCTTCAACGTTTTCCAAAACAAACCATTTGGATAGAGAAACTCATCAACAAGAAGGGTACTATGGTCGATATTTCTAGTTCCATAGAAATAGTGGTCTTAGTTAACTTTTTGTTCCAGCGAGTGTTGAACAAAAATGATGGACAGCCTTGCTCCTGTCTTTTAGGTTGCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACGCTACTTCAGGTTTCTTATAAAAAGGAAAGGAAAAAAGGTTGGAATTGTATTAAGGTGCACATATGTGAGAATTATAAATCTTTTCTTCTGCTCAACGTACTGCGCTTGCCTAATTTCTTATTGAATAGCCAATTGTATGTATAAATGTCGAATTTGGGAATCATTTCTTTCTTCTTTCTGTTTAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTTGCCTTTGTGGGGTTACAACAGGTAGTGCCTTCAAATTTTAAATTGTTTAATTATATATATATATATATATATATGCACACTTGTCAAATTAGAATTCTCACTAAATTTTGGGAAAAGGAGATTATTAGCTGCCATGTTTCTTTTCTGGTTATACTTTTTCAGGCATTCCAATTTAAGTCTTGCATGAGCTTCTTATTGTGAGTTACTGATGGAGTAGGGTTTGCGATAGAGAAAGTCTCCAGTTACTTTTTATCATGTGATTTGTGCCTCAGAGATGCATTTTTACAAATTCGGAGGATATTACTTCATTTTAATCTCACTCTCTATTTGAAGTACAAGAAAGTTGATTAGACATACTAGGAATGTTTGGTGGTTTCTGCTGCTTTGATTAGTTCTTTTACAAGGTTTAATAACATCATCTCTCTTTCTATTAAAGAACAGATTAAACATCCTAGTCTAGGATATCCCCGTTTTTCTCTCTCAAATACTTATTTCCAAATCATCTCTTCGAGTTAACGTCTCAAGCTCCATTTCCTTCCTTTGCAGGGGTTGACTTTATCTCCCTGGTCTATAAATTTTGTAGGCTCCCTCTTCTTTCCATTGACGTGATTGTTTCTTATTAGAAAGAAAATTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCTACCATTTTTGGGGATAGATCTTCTGACATAGTAAGACGGTGAGTTTATGGCCAAAAGGGACTTTTTTTCCCATATGTGAAACAAAAAGTTGCATAGCATAGTCTTAACTCTTGAAGAATTATGTTTCTTGTACTTTACTGCCTAATTCGGTATGCTTTACAAGATTGGTGATACGTGCCTAGTCTTAACCGTTTCATATTTGAGATATGAATGCTCACTCTGATCCATAGACTTGCATGCTTCTTTCACATGGTCAAGTACTTTAATAACTTGTTACAATTCTCTATGACTATTATGCTTCATATTGCTTGAAGACTTGCTTTGCGAATTGGGAGATCTATGATATGAATCTACGTATCACCAATTCTTTTGTTATTCTTGCCCATGTTTTGGTTGCTTCATTTTCAATCTCTCTTTTCTTGGATAGGAAGCAACTACCTTCATTGGTTCTTCCATCAAAAGAAAAATAAAGAAGAATAAGGAGAATGATGTTATGCTATATGGTGTGACCTTGATTTCCAAATTGATGAACTTTTCAGGTATTGATATGAGTTGGAAACTGTAAATTTCACTTTAACTATATTTAGTCTTTTTTAAGACAAGATTTCATTGAGATAAATGAAAGAATGCAAGACATAAAAAACAAGCCCACAAAAAAAGAGGCCCAACACTAACTATAAGAACGAATCCAATCCAAAAGAATGTGACAAGTAATTACAAAAAGTGTAATTAATATACTCACACAAAAAAGAAATAAATCTAGCTAACCCTCAAAACTCCTCCCAAGACCTCTCAACCTCTCTAATTATCCTACCGTTCATCTCAAGCTAAATTTCCCACAAATGGGGGGGAAAAGAAAAGAAGCCTTCAACAGTGCTTTCCTTTATCTTGAGAAGGAGGGTTCAGGAGCACTTCCTTATCATAGAATAACAGACTTTGTCGCGAGCCAACACAATCCCATAAGTCATGAAAAATTGATTCCAAAGGAAGAGAGCAAACCGACAATCTTTCTGTCGTTTGATGTACTCTTCTCTCAATAGGGGTTATGTTTTTTTCTACTTTTTGGAAGATTTATTCCAAAGAATATTAAGTTCTTTGTGTGACAAGTTATTCATAGATGAGTAAACACTCTTGCTTTAATCACTATAAATTCTGTTGGAACTAATAATTATCAACAATTGAAAAGCGTTCCTTTTGTAATAGCCCTTTAGCCTTGGTTTGAGAAATATTAAAACTACGGACATTGTTATTTTGATATTTCTGTTTCTAGCTATGCTTCTTTTGATGATATGACATACACTAACCCTCACAAACTTGTGTGTCAGTGAAAAATCTTTATCAGAGACGGAATCAAGACATGGGAAAACCGATGGTGGACAAGTTTTGTACCGTGAGTATATGCCTTCTGCATGGCAGGTAATCTATGAAATTTTCCCTGCCTATATTTTCTTTTATGAAAGCCATAACTTGCGTAGTTAGAAGTGTTGTCAGATTTTAAAGATAACAAGTCTCTCGATCACGTTAACCAGACTTGAGGTATTGCCTGAATGAAGAAGAAAACAAACATAAATTTAAGGATAAAAAACTAGAAATAAAATTGTTATCAAACAGTGCCTAAATCATATAAGAAGAGACAAGACATCCAAAGCTCCTGTTGTTACCATCACCTTCCTCTGAATTTAATGCATCATTCACTGATTTTCTGGAGACATTGTCCTCGCGGTGTACCCAAGGCTCAATGTTTTCCTTTCCTTCTTCTTCTGTGTTTTGGAGTCGAGTATTATAAGTCTCGTTTGCTAACTATTTAGTTTTTAAAAATTAAGTGTATGAATAGTCTACCTAATGGTTTCTTTGTTTTATTATCTACTTCTAAAAGTCGTCTTCAAAATCTAAATCATGTTTTGAGAACTAAAAAAATGTAGTTATGTTTTTAGAATTTGGCAAAGAATTCTAGTATTTAGATAGAAAAGATGAAAACCAAAATCAAATCCAAATAGTTATTAAACGAAATCATATCTATTTGTTTGGATTGAAAATTATATCAAGCATTATTTGATGATCGCTATCTTTTTTTGTTTTTTTGTTTTTGTTGTTGGAATGTCTTCTTATAGTAAACCACAACTGTAAACACATTCTCATTTTTAAGCACTATCATTAGAATCTTTCTTAAATTATAAACAAATAATGGAAAACTAGTCATTTTGTATTTAAGTCTTATTCCATTTTAGTCTAGTTCCGAAGTACACCAGAATGATATTTTGATCATTCTAACCTTAGAAAGAGACTAATTTGTTTGGGTTTTGCAGTCTTTTGTAACGCACAGAGTTTTTGTTCGAGGCTCAGGTTTGATTACATATTATGCTCAAAAGTGGAATGATTTGGTCATCTTTCTATATATTCAGTCATTTATCTGATAGCTTTTATTGCCTTGCAGACGAATATCTTACAGTGAGCAGTTGTGAGCATCAGTCAATATATTTTTCTGAATGGCTGCTACCATCCCTGGGTGTCCTCGATAAATTTATTGTCAAAAATGTGAGAAACCAACCCATTTTGCATATATTATCACTAAACTCGTCAAGCTCCATACTCATTGATAGTAATTGATATGTATAATTTCTTTTAAAGTTAGAGGTTCAAATTCTTGTACTTTAAATGGATAAGGGGTTAAATGTATTTGTTGTCTAAATAAACTTACATGAAAAAATTTTGGATTTTACATTTGTACCTGCAGGCTGGCGTCTTTATGGTACCATGAACTGCATTTGTTTGATATGCCACTGACCAGTTCTTGGGCGTTCTTATGATTCCAGGTCAGCCTTTTGTTTTTATTTGAATAACGTTTGGATGTCCAAGTTTTGTATTATTATCATTGTAGTTGAAGTTTTTATTGTTCAACTATCTAAAATGCATCTACTTTATTATGATAGTTAACGTCTAGAAGTGGCGTTTTAAACTATGGTATGCTCGTCAACAAAGATTAATGTTGATGTTTTCTACCTCAAATATCATACAAAAATGTAAATGATTTCAATGATATTTTCTTTTGTTGACTTGTATTCATGGTTTAGGGTTTAGCGTCCAACTGAGGACCTAATCGAATAAGGGAAAGGTGGTTTGGTTCGTGGTTGGTTGGATTGAGCTTCTCTTTCTTTCATTTTCTTCGTTTTCAGTGTTTGAATAAATAGGTAAAGGAGAATG

mRNA sequence

ATGTATTTGATAAGTCACACAAACGCAGGAGATTGGGGAAATTTTGATGCACTATATACTACATGCCTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAATTCGGTTGCATCTACTCATGATCGACAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTTGCCTTTGTGGGGTTACAACAGAAAGAAAATTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCTACCATTTTTGGGGATAGATCTTCTGACATAGTAAGACGTGAAAAATCTTTATCAGAGACGGAATCAAGACATGGGAAAACCGATGGTGGACAAGTTTTGTACCGTGAGTATATGCCTTCTGCATGGCAGTCTTTTGTAACGCACAGAGTTTTTGTTCGAGGCTCAGACGAATATCTTACAGTGAGCAGTTGTGAGCATCAGTCAATATATTTTTCTGAATGGCTGCTACCATCCCTGGGTGTCCTCGATAAATTTATTGTCAAAAATGCTGGCGTCTTTATGGTACCATGAACTGCATTTGTTTGATATGCCACTGACCAGTTCTTGGGCGTTCTTATGATTCCAGGTCAGCCTTTTGTTTTTATTTGAATAACGTTTGGATGTCCAAGTTTTGTATTATTATCATTGTAGTTGAAGTTTTTATTGTTCAACTATCTAAAATGCATCTACTTTATTATGATAGTTAACGTCTAGAAGTGGCGTTTTAAACTATGGTATGCTCGTCAACAAAGATTAATGTTGATGTTTTCTACCTCAAATATCATACAAAAATGTAAATGATTTCAATGATATTTTCTTTTGTTGACTTGTATTCATGGTTTAGGGTTTAGCGTCCAACTGAGGACCTAATCGAATAAGGGAAAGGTGGTTTGGTTCGTGGTTGGTTGGATTGAGCTTCTCTTTCTTTCATTTTCTTCGTTTTCAGTGTTTGAATAAATAGGTAAAGGAGAATG

Coding sequence (CDS)

ATGTATTTGATAAGTCACACAAACGCAGGAGATTGGGGAAATTTTGATGCACTATATACTACATGCCTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAATTCGGTTGCATCTACTCATGATCGACAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTTGCCTTTGTGGGGTTACAACAGAAAGAAAATTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCTACCATTTTTGGGGATAGATCTTCTGACATAGTAAGACGTGAAAAATCTTTATCAGAGACGGAATCAAGACATGGGAAAACCGATGGTGGACAAGTTTTGTACCGTGAGTATATGCCTTCTGCATGGCAGTCTTTTGTAACGCACAGAGTTTTTGTTCGAGGCTCAGACGAATATCTTACAGTGAGCAGTTGTGAGCATCAGTCAATATATTTTTCTGAATGGCTGCTACCATCCCTGGGTGTCCTCGATAAATTTATTGTCAAAAATGCTGGCGTCTTTATGGTACCATGA

Protein sequence

MYLISHTNAGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSSLPLWGYNRKKIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLGVLDKFIVKNAGVFMVP

Homology

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BLAST of Carg25932 vs. NCBI nr
Match: XP_022957215.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 390.2 bits (1001), Expect = 4.3e-105
Identity = 190/213 (89.20%), Postives = 196/213 (92.02%), Query Frame = 0


Query: 3   LISHTNAGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLL 62
           ++    +GDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLL
Sbjct: 104 ILEGNGSGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLL 163

Query: 63  MIDSIGAYHWVDRVSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIF 122
           MIDSIGAYHWVDRVSSSLPLWGYNRK             +++KLLLVHPSIVIASKATIF
Sbjct: 164 MIDSIGAYHWVDRVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIF 223

Query: 123 GDRSSDIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSS 182
           GDRSSDIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSS
Sbjct: 224 GDRSSDIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSS 283

Query: 183 CEHQSIYFSEWLLPSLGVLDKFIVKNAGVFMVP 203
           CEHQSIYFSEWLLPSLGVLDKFIVKNAGVFMVP
Sbjct: 284 CEHQSIYFSEWLLPSLGVLDKFIVKNAGVFMVP 316

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BLAST of Carg25932 vs. NCBI nr
Match: XP_022998310.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 379.0 bits (972), Expect = 9.9e-102
Identity = 186/206 (90.29%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 10  GDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGA 69
           GDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGI L LLMIDSIGA
Sbjct: 111 GDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIGLRLLMIDSIGA 170

Query: 70  YHWVDRVSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDRSSDI 129
           YHWVDRVSSSLPLWGYNRK             +I+KLLLVHPSIVIASKATIFGDRSSDI
Sbjct: 171 YHWVDRVSSSLPLWGYNRKGFSLANMLEAAVEEIKKLLLVHPSIVIASKATIFGDRSSDI 230

Query: 130 VRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIY 189
           VRREKS SETESRHGK+DGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIY
Sbjct: 231 VRREKSSSETESRHGKSDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIY 290

Query: 190 FSEWLLPSLGVLDKFIVKNAGVFMVP 203
           FSEWLLPSLGVLDKFIVKNAG+FMVP
Sbjct: 291 FSEWLLPSLGVLDKFIVKNAGIFMVP 316

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BLAST of Carg25932 vs. NCBI nr
Match: XP_023550059.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.3 bits (970), Expect = 1.7e-101
Identity = 188/206 (91.26%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 10  GDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGA 69
           GD GNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGA
Sbjct: 111 GDLGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGA 170

Query: 70  YHWVDRVSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDRSSDI 129
           YHWVDRVSSSLPLWG NRK             +I+KLLLVHPSIVIASKATIFGDRSSDI
Sbjct: 171 YHWVDRVSSSLPLWGNNRKGFSLANMLEAAVEEIKKLLLVHPSIVIASKATIFGDRSSDI 230

Query: 130 VRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIY 189
           VRREKSLSETE RHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIY
Sbjct: 231 VRREKSLSETELRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIY 290

Query: 190 FSEWLLPSLGVLDKFIVKNAGVFMVP 203
           FSEWLLPSLGVLDKFIVKNAGVFMVP
Sbjct: 291 FSEWLLPSLGVLDKFIVKNAGVFMVP 316

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BLAST of Carg25932 vs. NCBI nr
Match: XP_008456836.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 3.1e-87
Identity = 162/208 (77.88%), Postives = 175/208 (84.13%), Query Frame = 0


Query: 8   NAGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSI 67
           N GD  NFDALY TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSI
Sbjct: 114 NTGDGENFDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSI 173

Query: 68  GAYHWVDRVSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDRSS 127
           GAYHWVDR+SSSLP WG+NRK             ++RKLLLVHPSIVIAS+ATIFGDRSS
Sbjct: 174 GAYHWVDRISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSS 233

Query: 128 DIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQS 187
           ++VRR+KSLSE+E RHGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L  SSCEHQ 
Sbjct: 234 NVVRRDKSLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQP 293

Query: 188 IYFSEWLLPSLGVLDKFIVKNAGVFMVP 203
            Y SEWLLPSLG +DKFIV NAGVF VP
Sbjct: 294 TYSSEWLLPSLGFVDKFIVTNAGVFSVP 321

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BLAST of Carg25932 vs. NCBI nr
Match: XP_011655113.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus] >KGN50855.1 hypothetical protein Csa_5G289900 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 1.2e-86
Identity = 161/208 (77.40%), Postives = 175/208 (84.13%), Query Frame = 0


Query: 8   NAGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSI 67
           + GD  NFDALY TCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSI
Sbjct: 114 STGDGENFDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDSI 173

Query: 68  GAYHWVDRVSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDRSS 127
           GAYHWVDR+SSSLPLWG+NRK             ++RKLLLVHPSIVIASKATIFGDRSS
Sbjct: 174 GAYHWVDRISSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSS 233

Query: 128 DIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQS 187
           D V+R+K+LSE+E +HGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L +SSCEHQ 
Sbjct: 234 DAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP 293

Query: 188 IYFSEWLLPSLGVLDKFIVKNAGVFMVP 203
            Y SEWLLPSLG LDKFIV NAGVF VP
Sbjct: 294 TYSSEWLLPSLGFLDKFIVTNAGVFSVP 321

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BLAST of Carg25932 vs. TAIR10
Match: AT5G64520.1 (homolog of X-ray repair cross complementing 2 (XRCC2))

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-37
Identity = 78/193 (40.41%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 16  DALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDR 75
           + LY +C++RF Y+RCYDS E L++LKT+H+++Q +++  G ++ +LMIDSIGA+HW DR
Sbjct: 142 EELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQ-QQEACGSQVGVLMIDSIGAFHWTDR 201

Query: 76  VSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDR-SSDIVRREK 135
           +SSSL L  +NRK             +++KLLLVH  +V+A+K TI+ ++  ++   R+ 
Sbjct: 202 LSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIYEEKYPANENNRKV 261

Query: 136 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFS-EW 194
           S ++  S +  +   Q  +RE+MPS+WQ+FVTH++ +R S +Y ++ + +   + +S EW
Sbjct: 262 SSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQTGQQNLLAYSLEW 321

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BLAST of Carg25932 vs. Swiss-Prot
Match: sp|Q682D3|XRCC2_ARATH (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 2.2e-36
Identity = 78/193 (40.41%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 16  DALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDR 75
           + LY +C++RF Y+RCYDS E L++LKT+H+++Q +++  G ++ +LMIDSIGA+HW DR
Sbjct: 142 EELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQ-QQEACGSQVGVLMIDSIGAFHWTDR 201

Query: 76  VSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDR-SSDIVRREK 135
           +SSSL L  +NRK             +++KLLLVH  +V+A+K TI+ ++  ++   R+ 
Sbjct: 202 LSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIYEEKYPANENNRKV 261

Query: 136 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFS-EW 194
           S ++  S +  +   Q  +RE+MPS+WQ+FVTH++ +R S +Y ++ + +   + +S EW
Sbjct: 262 SSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQTGQQNLLAYSLEW 321

[Close]

BLAST of Carg25932 vs. Swiss-Prot
Match: sp|Q9CX47|XRCC2_MOUSE (DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-07
Identity = 44/144 (30.56%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 22  CLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVS--SS 81
           CL R F   C  S + L TL ++   L          L LL++DS+ +++W+DRVS   S
Sbjct: 111 CLARLFLAYCSSSMQLLLTLHSLEALLCSRPS-----LCLLIVDSLSSFYWIDRVSGGES 170

Query: 82  LPLWGYNRKKIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSETESRHGKTDGGQVL 141
           + L     +K  +LL     +V   +  +F    S + +   S     S     D G + 
Sbjct: 171 VALQESTLQKCSQLL---ERLVTEYRLLLFATTQSLMQKGSDSADGPSSSKHPCD-GDMG 230

Query: 142 YREYMPSAWQSFVTHRVFVRGSDE 164
           YR Y+  AWQ  V HRV     DE
Sbjct: 231 YRAYLCKAWQRVVKHRVIFSRDDE 245

[Close]

BLAST of Carg25932 vs. TrEMBL
Match: tr|A0A1S3C491|A0A1S3C491_CUCME (DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 2.0e-87
Identity = 162/208 (77.88%), Postives = 175/208 (84.13%), Query Frame = 0


Query: 8   NAGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSI 67
           N GD  NFDALY TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSI
Sbjct: 114 NTGDGENFDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSI 173

Query: 68  GAYHWVDRVSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDRSS 127
           GAYHWVDR+SSSLP WG+NRK             ++RKLLLVHPSIVIAS+ATIFGDRSS
Sbjct: 174 GAYHWVDRISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSS 233

Query: 128 DIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQS 187
           ++VRR+KSLSE+E RHGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L  SSCEHQ 
Sbjct: 234 NVVRRDKSLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQP 293

Query: 188 IYFSEWLLPSLGVLDKFIVKNAGVFMVP 203
            Y SEWLLPSLG +DKFIV NAGVF VP
Sbjct: 294 TYSSEWLLPSLGFVDKFIVTNAGVFSVP 321

[Close]

BLAST of Carg25932 vs. TrEMBL
Match: tr|A0A0A0KMH0|A0A0A0KMH0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 7.8e-87
Identity = 161/208 (77.40%), Postives = 175/208 (84.13%), Query Frame = 0


Query: 8   NAGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSI 67
           + GD  NFDALY TCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSI
Sbjct: 114 STGDGENFDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDSI 173

Query: 68  GAYHWVDRVSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDRSS 127
           GAYHWVDR+SSSLPLWG+NRK             ++RKLLLVHPSIVIASKATIFGDRSS
Sbjct: 174 GAYHWVDRISSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSS 233

Query: 128 DIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQS 187
           D V+R+K+LSE+E +HGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L +SSCEHQ 
Sbjct: 234 DAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQP 293

Query: 188 IYFSEWLLPSLGVLDKFIVKNAGVFMVP 203
            Y SEWLLPSLG LDKFIV NAGVF VP
Sbjct: 294 TYSSEWLLPSLGFLDKFIVTNAGVFSVP 321

[Close]

BLAST of Carg25932 vs. TrEMBL
Match: tr|A0A1S3C3R7|A0A1S3C3R7_CUCME (DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 6.2e-84
Identity = 156/201 (77.61%), Postives = 169/201 (84.08%), Query Frame = 0


Query: 8   NAGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSI 67
           N GD  NFDALY TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSI
Sbjct: 114 NTGDGENFDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSI 173

Query: 68  GAYHWVDRVSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDRSS 127
           GAYHWVDR+SSSLP WG+NRK             ++RKLLLVHPSIVIAS+ATIFGDRSS
Sbjct: 174 GAYHWVDRISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSS 233

Query: 128 DIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQS 187
           ++VRR+KSLSE+E RHGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L  SSCEHQ 
Sbjct: 234 NVVRRDKSLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQP 293

Query: 188 IYFSEWLLPSLGVLDKFIVKN 196
            Y SEWLLPSLG +DKFIV N
Sbjct: 294 TYSSEWLLPSLGFVDKFIVTN 314

[Close]

BLAST of Carg25932 vs. TrEMBL
Match: tr|A0A1S3C456|A0A1S3C456_CUCME (DNA repair protein XRCC2 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.1e-64
Identity = 124/178 (69.66%), Postives = 143/178 (80.34%), Query Frame = 0


Query: 8   NAGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSI 67
           N GD  NFDALY TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSI
Sbjct: 114 NTGDGENFDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSI 173

Query: 68  GAYHWVDRVSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDRSS 127
           GAYHWVDR+SSSLP WG+NRK             ++RKLLLVHPSIVIAS+ATIFGDRSS
Sbjct: 174 GAYHWVDRISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSS 233

Query: 128 DIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEH 173
           ++VRR+KSLSE+E RHGK DGG  LYREYMPSAWQ+ + H   V   ++++ ++ C H
Sbjct: 234 NVVRRDKSLSESELRHGKPDGGLGLYREYMPSAWQTNILHLAVV-SINQHILLNGCYH 290

[Close]

BLAST of Carg25932 vs. TrEMBL
Match: tr|A0A2P4MB91|A0A2P4MB91_QUESU (Dna repair protein xrcc2 like OS=Quercus suber OX=58331 GN=CFP56_47351 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.5e-53
Identity = 109/200 (54.50%), Postives = 143/200 (71.50%), Query Frame = 0


Query: 16  DALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDR 75
           + LYT C+RRF Y+RCYDSFEFLATLKT+H+++QKE+   G  +H+L+IDSIGA+HW+DR
Sbjct: 131 EELYTLCMRRFLYVRCYDSFEFLATLKTLHYRIQKEK-AYGTCVHMLLIDSIGAFHWIDR 190

Query: 76  VSSSLPLWGYNRK-------------KIRKLLLVHPSIVIASKATIFGDRSSDIVRREKS 135
            S+ LPL G NRK             +IRKLLL+HP + IA+KAT+FG+R+ +  +    
Sbjct: 191 ASTCLPLRGNNRKSHSIQTVLETVVQEIRKLLLLHPMLAIATKATLFGNRAMNESKWNLR 250

Query: 136 LSET-ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 195
             +T  S+ G     Q+ YREYMPS WQ+FVTHR+ +R SD++L VS  ++ S+Y SEWL
Sbjct: 251 KPDTSNSQSGGITALQLPYREYMPSVWQTFVTHRILLRPSDDHLAVSDDQNHSVYISEWL 310

Query: 196 LPSLGVLDKFIVKNAGVFMV 202
           LPSL  LDKFIVK AGVF V
Sbjct: 311 LPSLSFLDKFIVKEAGVFFV 329

The following BLAST results are available for this feature:

BLAST of Carg25932 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957215.1	4.3e-105	89.20	DNA repair protein XRCC2 homolog isoform X1 [Cucurbita moschata]	[more]
XP_022998310.1	9.9e-102	90.29	DNA repair protein XRCC2 homolog isoform X1 [Cucurbita maxima]	[more]
XP_023550059.1	1.7e-101	91.26	DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_008456836.1	3.1e-87	77.88	PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]	[more]
XP_011655113.1	1.2e-86	77.40	PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus] >KGN508...	[more]

BLAST of Carg25932 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64520.1	1.2e-37	40.41	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]

BLAST of Carg25932 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q682D3\|XRCC2_ARATH	2.2e-36	40.41	DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 S...	[more]
sp\|Q9CX47\|XRCC2_MOUSE	1.7e-07	30.56	DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1	[more]

BLAST of Carg25932 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C491\|A0A1S3C491_CUCME	2.0e-87	77.88	DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
tr\|A0A0A0KMH0\|A0A0A0KMH0_CUCSA	7.8e-87	77.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4 SV=1	[more]
tr\|A0A1S3C3R7\|A0A1S3C3R7_CUCME	6.2e-84	77.61	DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
tr\|A0A1S3C456\|A0A1S3C456_CUCME	4.1e-64	69.66	DNA repair protein XRCC2 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
tr\|A0A2P4MB91\|A0A2P4MB91_QUESU	2.5e-53	54.50	Dna repair protein xrcc2 like OS=Quercus suber OX=58331 GN=CFP56_47351 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0005657	replication fork

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair
GO:0000724	double-strand break repair via homologous recombination

Vocabulary: **INTERPRO**
Term	Definition
IPR030547	XRCC2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25932-RA	Carg25932-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 3..200 e-value: 8.6E-9 score: 37.2
None	No IPR available	PANTHER	PTHR22942	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	coord: 16..193
IPR030547	DNA repair protein XRCC2	PANTHER	PTHR22942:SF44	DNA REPAIR PROTEIN XRCC2	coord: 16..193

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25932	CmaCh04G018730	Cucurbita maxima (Rimu)	carcmaB0495
Carg25932	CmoCh04G019720	Cucurbita moschata (Rifu)	carcmoB0478
Carg25932	Cp4.1LG01g16600	Cucurbita pepo (Zucchini)	carcpeB0492
Carg25932	CsGy5G009950	Cucumber (Gy14) v2	carcgybB0364
Carg25932	CsaV3_5G013190	Cucumber (Chinese Long) v3	carcucB0388
Carg25932	Cla97C11G207550	Watermelon (97103) v2	carwmbB0368
Carg25932	Bhi07G000125	Wax gourd	carwgoB0436

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25932	Watermelon (Charleston Gray)	carwcgB0344
Carg25932	Watermelon (97103) v1	carwmB0343
Carg25932	Watermelon (97103) v2	carwmbB0367
Carg25932	Wild cucumber (PI 183967)	carcpiB0389