ClCG11G001140 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G001140
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	DNA repair protein XRCC2-like protein
Location	CG_Chr11 : 1419927 .. 1420519 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGCCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGTCCAATTATCAAGTTCAATCTCTCCATTTGAACTTCTTGCATGATTTATATCTGATATATCCATCACATATTGATGGTGATTTACCTCGAAAGCATGAGAACAATTTGTCTGCCATTATAAGTAGACCGATTCTGTCTTACCAAAAAAAAAGTAGACTGCTTCTGTGAGCAGGCTGCAGTTAATTGCATTCTTCCAAAGGAGTGGAATGGAATCCGCTATGGTGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGGTGAGCTATTTGTGCCATTTAATATTGATAAAATGTTACCTTCAAGATTATATCGACGAGCTGCAATTCTGCTCAATGATATCTCGTAA

mRNA sequence

ATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGCCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCAAAGGAGTGGAATGGAATCCGCTATGGTGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGGTGAGCTATTTGTGCCATTTAATATTGATAAAATGTTACCTTCAAGATTATATCGACGAGCTGCAATTCTGCTCAATGATATCTCGTAA

Coding sequence (CDS)

ATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGCCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCAAAGGAGTGGAATGGAATCCGCTATGGTGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGGTGAGCTATTTGTGCCATTTAATATTGATAAAATGTTACCTTCAAGATTATATCGACGAGCTGCAATTCTGCTCAATGATATCTCGTAA

Protein sequence

MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGELFVPFNIDKMLPSRLYRRAAILLNDIS

Homology

[Close]

BLAST of ClCG11G001140 vs. Swiss-Prot
Match: XRCC2_ARATH (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-35
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 1


Query: 6   WIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA--ISNG 112
           LPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A  + NG
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNG 116

[Close]

BLAST of ClCG11G001140 vs. Swiss-Prot
Match: XRCC2_HUMAN (DNA repair protein XRCC2 OS=Homo sapiens GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 1


Query: 11  ESALEMLARVLKERTSL--VVPPLHR---VPLRVGNVVELVGPSGSAKTQILIQAAVNCI 70
           ES  E+LAR L+ R+SL  + P L      P+  G+++E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLAR-LEGRSSLKEIEPNLFADEDSPVH-GDILEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA 108
           LPK       GGLE  V+FID D   D+ RL  +L+ R+ ++
Sbjct: 69  LPKS-----EGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQS 103

[Close]

BLAST of ClCG11G001140 vs. Swiss-Prot
Match: XRCC2_MOUSE (DNA repair protein XRCC2 OS=Mus musculus GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.5e-07
Identity = 39/107 (36.45%), Postives = 53/107 (49.53%), Query Frame = 1


Query: 11  ESALEMLARVLKERTSLVV----------PPLHRVPLRVGNVVELVGPSGSAKTQILIQA 70
           ES  E+LAR L+ R+SL             P+H      G++ E  GP G+ KT++L   
Sbjct: 9   ESGTELLAR-LEGRSSLKELEPNLFADEDSPVH------GDIFEFHGPEGTGKTEMLYHL 68

Query: 71  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA 108
              CILPK       GGL+  V+FID D   D+ RL  VL+ R+ ++
Sbjct: 69  TARCILPKS-----EGGLQIEVLFIDTDYHFDMLRLVTVLEHRLSQS 103

[Close]

BLAST of ClCG11G001140 vs. TrEMBL
Match: A0A0A0KMH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 101/113 (89.38%), Postives = 103/113 (91.15%), Query Frame = 1


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGEL 114
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDITRL QVLKLRI+EA SNG L
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSL 113

[Close]

BLAST of ClCG11G001140 vs. TrEMBL
Match: M5XPA7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014924mg PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-37
Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 1


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MA   WIDGDESA +ML RV  ER  L++PPLHRVPLRVGNVVELVGPS SAKT ILIQA
Sbjct: 1   MAAKGWIDGDESAAKMLGRVATERPFLLLPPLHRVPLRVGNVVELVGPSASAKTHILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGELF 115
           AVNCILPKEWNG+ YGGLE  V+FIDLDCR DI RLS++LK +I E   NG ++
Sbjct: 61  AVNCILPKEWNGVHYGGLERLVMFIDLDCRFDILRLSEILKHQITE--PNGSMY 112

[Close]

BLAST of ClCG11G001140 vs. TrEMBL
Match: W9RLW6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024152 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-34
Identity = 76/107 (71.03%), Postives = 89/107 (83.18%), Query Frame = 1


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M   +WID DESA EMLARV  ER  L++PPLHR+PLRVGNVVELVGPS S+KT ILIQA
Sbjct: 1   MEAKRWIDVDESAAEMLARVSTERPFLLLPPLHRLPLRVGNVVELVGPSPSSKTLILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA 108
           A++CILPKEWNG  YGGLE  V+FIDLDCR DI+ LS++LK R++EA
Sbjct: 61  AISCILPKEWNGAHYGGLERPVMFIDLDCRFDISCLSKMLKQRMMEA 107

[Close]

BLAST of ClCG11G001140 vs. TrEMBL
Match: A0A103Y2T3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_020260 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.3e-34
Identity = 74/104 (71.15%), Postives = 89/104 (85.58%), Query Frame = 1


Query: 5   QWIDGDESALEMLARVLKERTSLVVP-PLHRVPLRVGNVVELVGPSGSAKTQILIQAAVN 64
           +WI+GDESA +ML RVLKER  L++P PLHR+PL V N+VE+VGPS SAKT+IL+Q AV+
Sbjct: 4   RWINGDESAKQMLGRVLKERPLLLLPHPLHRIPLVVSNIVEIVGPSPSAKTEILLQVAVS 63

Query: 65  CILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA 108
           CILPK WNG++YGGLE SV+F+DLDCRLDI RLS  LKLRI EA
Sbjct: 64  CILPKSWNGVQYGGLEHSVLFLDLDCRLDIFRLSHCLKLRITEA 107

[Close]

BLAST of ClCG11G001140 vs. TrEMBL
Match: M0RTF8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-33
Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 1


Query: 6   WIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDESA  MLARVL ER+ L++PPLHR+PLRVGNVVE+ GPS SAK+Q+L+QAAV+CI
Sbjct: 10  WIHGDESAKAMLARVLTERSFLLLPPLHRLPLRVGNVVEIAGPSPSAKSQVLLQAAVHCI 69

Query: 66  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAI 109
           LP+EW G+R+GGLE  V++ DLDCR D+ RLSQ+LK RI E +
Sbjct: 70  LPREWRGLRFGGLERMVIYFDLDCRFDVLRLSQILKHRIKEVL 112

[Close]

BLAST of ClCG11G001140 vs. TAIR10
Match: AT5G64520.1 (AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2))

HSP 1 Score: 150.2 bits (378), Expect = 9.3e-37
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 1


Query: 6   WIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA--ISNG 112
           LPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A  + NG
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNG 116

[Close]

BLAST of ClCG11G001140 vs. NCBI nr
Match: gi|659113945|ref|XP_008456835.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-50
Identity = 105/113 (92.92%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGEL 114
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISNG L
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSL 113

[Close]

BLAST of ClCG11G001140 vs. NCBI nr
Match: gi|659113947|ref|XP_008456836.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-50
Identity = 105/113 (92.92%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGEL 114
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISNG L
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSL 113

[Close]

BLAST of ClCG11G001140 vs. NCBI nr
Match: gi|659113949|ref|XP_008456837.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-50
Identity = 105/113 (92.92%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGEL 114
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISNG L
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSL 113

[Close]

BLAST of ClCG11G001140 vs. NCBI nr
Match: gi|659113951|ref|XP_008456838.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X4 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-50
Identity = 105/113 (92.92%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGEL 114
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISNG L
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSL 113

[Close]

BLAST of ClCG11G001140 vs. NCBI nr
Match: gi|778701939|ref|XP_011655114.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.7e-48
Identity = 101/113 (89.38%), Postives = 103/113 (91.15%), Query Frame = 1


Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNGEL 114
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDITRL QVLKLRI+EA SNG L
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSL 113

The following BLAST results are available for this feature:

BLAST of ClCG11G001140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XRCC2_ARATH	1.7e-35	67.59	DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2	[more]
XRCC2_HUMAN	1.9e-07	39.22	DNA repair protein XRCC2 OS=Homo sapiens GN=XRCC2 PE=1 SV=1	[more]
XRCC2_MOUSE	9.5e-07	36.45	DNA repair protein XRCC2 OS=Mus musculus GN=Xrcc2 PE=2 SV=1	[more]

BLAST of ClCG11G001140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMH0_CUCSA	1.2e-48	89.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289900 PE=4 SV=1	[more]
M5XPA7_PRUPE	2.1e-37	71.93	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014924mg PE=4 S...	[more]
W9RLW6_9ROSA	2.2e-34	71.03	Uncharacterized protein OS=Morus notabilis GN=L484_024152 PE=4 SV=1	[more]
A0A103Y2T3_CYNCS	8.3e-34	71.15	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_020260 PE=4 ...	[more]
M0RTF8_MUSAM	1.1e-33	67.96	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]

BLAST of ClCG11G001140 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64520.1	9.3e-37	67.59	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]

BLAST of ClCG11G001140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113945\|ref\|XP_008456835.1\|	1.8e-50	92.92	PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo]	[more]
gi\|659113947\|ref\|XP_008456836.1\|	1.8e-50	92.92	PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]	[more]
gi\|659113949\|ref\|XP_008456837.1\|	1.8e-50	92.92	PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo]	[more]
gi\|659113951\|ref\|XP_008456838.1\|	1.8e-50	92.92	PREDICTED: DNA repair protein XRCC2 homolog isoform X4 [Cucumis melo]	[more]
gi\|778701939\|ref\|XP_011655114.1\|	1.7e-48	89.38	PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013632	DNA_recomb/repair_Rad51_C
IPR020588	RecA_ATP-bd
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0008094	DNA-dependent ATPase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008094	DNA-dependent ATPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G001140.1	ClCG11G001140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013632	DNA recombination and repair protein Rad51, C-terminal	PFAM	PF08423	Rad51	coord: 38..99 score: 8.
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROFILE	PS50162	RECA_2	coord: 17..139 score: 14
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 37..131 score: 7.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 37..124 score: 1.4
None	No IPR available	PANTHER	PTHR22942	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	coord: 1..107 score: 1.5
None	No IPR available	PANTHER	PTHR22942:SF36	DNA REPAIR PROTEIN XRCC2 HOMOLOG	coord: 1..107 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G001140	MELO3C020032	Melon (DHL92) v3.5.1	mewcgB045
ClCG11G001140	Cla016886	Watermelon (97103) v1	wcgwmB107
ClCG11G001140	Cla97C11G207550	Watermelon (97103) v2	wcgwmbB065
ClCG11G001140	Bhi07G000127	Wax gourd	wcgwgoB175
ClCG11G001140	CSPI05G12570	Wild cucumber (PI 183967)	cpiwcgB373
ClCG11G001140	Cucsa.373370	Cucumber (Gy14) v1	cgywcgB637
ClCG11G001140	CmaCh04G018730	Cucurbita maxima (Rimu)	cmawcgB633
ClCG11G001140	CmoCh04G019720	Cucurbita moschata (Rifu)	cmowcgB634
ClCG11G001140	Lsi11G001270	Bottle gourd (USVL1VR-Ls)	lsiwcgB078
ClCG11G001140	MELO3C020032.2	Melon (DHL92) v3.6.1	medwcgB048
ClCG11G001140	Carg25933	Silver-seed gourd	carwcgB0344
ClCG11G001140	CsaV3_5G013190	Cucumber (Chinese Long) v3	cucwcgB377

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G001140	Wax gourd	wcgwgoB172
ClCG11G001140	Cucurbita maxima (Rimu)	cmawcgB626
ClCG11G001140	Cucurbita moschata (Rifu)	cmowcgB627
ClCG11G001140	Cucumber (Chinese Long) v2	cuwcgB359
ClCG11G001140	Melon (DHL92) v3.5.1	mewcgB044
ClCG11G001140	Cucurbita pepo (Zucchini)	cpewcgB361
ClCG11G001140	Cucurbita pepo (Zucchini)	cpewcgB365
ClCG11G001140	Cucurbita pepo (Zucchini)	cpewcgB369
ClCG11G001140	Cucumber (Gy14) v2	cgybwcgB329
ClCG11G001140	Melon (DHL92) v3.6.1	medwcgB044
ClCG11G001140	Silver-seed gourd	carwcgB0169