Carg25933 (gene) Silver-seed gourd

Overview
NameCarg25933
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA repair protein XRCC2 homolog
LocationCucurbita_argyrosperma_scaffold_263 : 136254 .. 136962 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTGTCGCAGAGTTCCGGCCAAATAAGGGCGTTGCAATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTCACTAGAGTCCTCAAAGAGCGAACCTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCTCCACGTCGGCAATGTGGTCGAACTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGTCTAATTATCAAGTTGAATTTGTCCATTTGAACTTCTTGCATCGTTTATAATTGACAACTTCGATGAAAAATTATTGGTGATTTACCTCGAAAGACTTTGAGAACAATTTGTGGGATATTAAAAGTAGACTGCTTCTGTGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTGCCCAAGTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGCGGTGAGCTATTTGTGCCATTTAATATTGATAATATATTTACTTCAAGGTTATCTCCACGAGCTGAAATTTTGCTTAATGATATCTGTAATGTCTCGGGTCATTTCTAGGATTTATTGCGTCTTTGAGTTATTAATCTGTACATATGCTTCTGTTATACATTTGATATAGAGCTAGTCTTGATGATTGCTATTCTGCT

mRNA sequence

ACTGTCGCAGAGTTCCGGCCAAATAAGGGCGTTGCAATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTCACTAGAGTCCTCAAAGAGCGAACCTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCTCCACGTCGGCAATGTGGTCGAACTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTGCCCAAGTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGCGGTGAGCTATTTGTGCCATTTAATATTGATAATATATTTACTTCAAGGTTATCTCCACGAGCTGAAATTTTGCTTAATGATATCTGTAATGTCTCGGGTCATTTCTAGGATTTATTGCGTCTTTGAGTTATTAATCTGTACATATGCTTCTGTTATACATTTGATATAGAGCTAGTCTTGATGATTGCTATTCTGCT

Coding sequence (CDS)

ATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTCACTAGAGTCCTCAAAGAGCGAACCTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCTCCACGTCGGCAATGTGGTCGAACTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTGCCCAAGTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGCGGTGAGCTATTTGTGCCATTTAATATTGATAATATATTTACTTCAAGGTTATCTCCACGAGCTGAAATTTTGCTTAATGATATCTGTAATGTCTCGGGTCATTTCTAG

Protein sequence

MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGELFVPFNIDNIFTSRLSPRAEILLNDICNVSGHF
Homology
[Close]
BLAST of Carg25933 vs. NCBI nr
Match: XP_023550059.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 114/127 (89.76%), Postives = 120/127 (94.49%), Query Frame = 0 

Query: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGELFVPFNID 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVLKLRILEGNG+G+L    N D
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNGDL---GNFD 120

Query: 121 NIFTSRL 128
            ++T+ L
Sbjct: 121 ALYTTCL 124

[Close]
BLAST of Carg25933 vs. NCBI nr
Match: XP_023550300.1 (DNA repair protein XRCC2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 114/127 (89.76%), Postives = 120/127 (94.49%), Query Frame = 0 

Query: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGELFVPFNID 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVLKLRILEGNG+G+L    N D
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNGDL---GNFD 120

Query: 121 NIFTSRL 128
            ++T+ L
Sbjct: 121 ALYTTCL 124

[Close]
BLAST of Carg25933 vs. NCBI nr
Match: XP_022957215.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 2.2e-55
Identity = 113/127 (88.98%), Postives = 118/127 (92.91%), Query Frame = 0 

Query: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDETAAEMLTRV KERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGELFVPFNID 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVLKLRILEGNGSG+     N D
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDW---GNFD 120

Query: 121 NIFTSRL 128
            ++T+ L
Sbjct: 121 ALYTTCL 124

[Close]
BLAST of Carg25933 vs. NCBI nr
Match: XP_022957217.1 (DNA repair protein XRCC2 homolog isoform X3 [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 2.2e-55
Identity = 113/127 (88.98%), Postives = 118/127 (92.91%), Query Frame = 0 

Query: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDETAAEMLTRV KERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGELFVPFNID 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVLKLRILEGNGSG+     N D
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDW---GNFD 120

Query: 121 NIFTSRL 128
            ++T+ L
Sbjct: 121 ALYTTCL 124

[Close]
BLAST of Carg25933 vs. NCBI nr
Match: XP_022998340.1 (DNA repair protein XRCC2 homolog isoform X3 [Cucurbita maxima])

HSP 1 Score: 224.6 bits (571), Expect = 2.2e-55
Identity = 112/127 (88.19%), Postives = 119/127 (93.70%), Query Frame = 0 

Query: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDE+AAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGELFVPFNID 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVLKLRILEGNG+G+     N D
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNGDW---GNFD 120

Query: 121 NIFTSRL 128
            ++T+ L
Sbjct: 121 ALYTTCL 124

[Close]
BLAST of Carg25933 vs. TAIR10
Match: AT5G64520.1 (homolog of X-ray repair cross complementing 2 (XRCC2))

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-38
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 0 

Query: 4   RQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVN 63
           R WI GDETA +ML+RVLK+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++
Sbjct: 7   RSWIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAIS 66

Query: 64  CILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSG 112
           CILPK WNGI YGGL   V+F+DLDCR D+ RL+Q+LK R+L+ N  G
Sbjct: 67  CILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLG 114

[Close]
BLAST of Carg25933 vs. TAIR10
Match: AT2G28560.1 (DNA repair (Rad51) family protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 29/109 (26.61%), Postives = 52/109 (47.71%), Query Frame = 0 

Query: 40  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL--- 99
           G + ELVGP G  K+Q  ++ A++   P     + YGGL+  V++ID++ +    R+   
Sbjct: 102 GVLTELVGPPGIGKSQFCMKLALSASFP-----VAYGGLDGRVIYIDVESKFSSRRVIEM 161

Query: 100 -----AQVLKLRILEGNGSGELFV--PFNIDNIFTSRLSPRAEILLNDI 139
                 +V  L+ +    +G + V  P ++ N   S    +  IL N +
Sbjct: 162 GLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQNQV 205

[Close]
BLAST of Carg25933 vs. Swiss-Prot
Match: sp|Q682D3|XRCC2_ARATH (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 3.2e-37
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 0 

Query: 4   RQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVN 63
           R WI GDETA +ML+RVLK+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++
Sbjct: 7   RSWIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAIS 66

Query: 64  CILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSG 112
           CILPK WNGI YGGL   V+F+DLDCR D+ RL+Q+LK R+L+ N  G
Sbjct: 67  CILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLG 114

[Close]
BLAST of Carg25933 vs. Swiss-Prot
Match: sp|O43543|XRCC2_HUMAN (DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-09
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 0 

Query: 11  ETAAEMLTRVLKERTSL--LVPPL---HRVPLHVGNVVELVGPSGSAKTQILIQAAVNCI 70
           E+  E+L R L+ R+SL  + P L      P+H G+++E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLAR-LEGRSSLKEIEPNLFADEDSPVH-GDILEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGELFVPFNIDNIFTS 130
           LPK       GGLE  V+FID D   D+ RL  +L+ R+ +   S E  + + +   F  
Sbjct: 69  LPKS-----EGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQ---SSEEIIKYCLGRFFLV 128

Query: 131 RLSPRAEILL 136
             S    +LL
Sbjct: 129 YCSSSTHLLL 128

[Close]
BLAST of Carg25933 vs. Swiss-Prot
Match: sp|Q9CX47|XRCC2_MOUSE (DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-09
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = 0 

Query: 11  ETAAEMLTRVLKERTSL--LVPPL---HRVPLHVGNVVELVGPSGSAKTQILIQAAVNCI 70
           E+  E+L R L+ R+SL  L P L      P+H G++ E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLAR-LEGRSSLKELEPNLFADEDSPVH-GDIFEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGELFVPFNIDNIFTS 130
           LPK       GGL+  V+FID D   D+ RL  VL+ R+ +   S E  +   +  +F +
Sbjct: 69  LPKS-----EGGLQIEVLFIDTDYHFDMLRLVTVLEHRLSQ---SSEEAMKLCLARLFLA 128

Query: 131 RLSPRAEILL 136
             S   ++LL
Sbjct: 129 YCSSSMQLLL 128

[Close]
BLAST of Carg25933 vs. Swiss-Prot
Match: sp|Q9HJ68|RADA_THEAC (DNA repair and recombination protein RadA OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=radA PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.6e-04
Identity = 25/60 (41.67%), Postives = 32/60 (53.33%), Query Frame = 0 

Query: 42  VVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLK 101
           + E  G  GS KTQI+ Q AVNC LPKE      GG +  V+ ID +      R+ Q+ K
Sbjct: 110 ITEFFGEFGSGKTQIMHQLAVNCTLPKE-----KGGFDSDVMMIDTENTFRPERIIQMAK 164

[Close]
BLAST of Carg25933 vs. Swiss-Prot
Match: sp|Q97BJ9|RADA_THEVO (DNA repair and recombination protein RadA OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) OX=273116 GN=radA PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-04
Identity = 25/65 (38.46%), Postives = 35/65 (53.85%), Query Frame = 0 

Query: 42  VVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLK 101
           + E  G  GS KTQI+ Q AVNC +PKE      GG +  V+ ID +      R+ Q+ K
Sbjct: 110 ITEFFGEFGSGKTQIMHQLAVNCTMPKE-----KGGFDSDVMMIDTENTFRPERIIQMAK 169

Query: 102 LRILE 107
            + L+
Sbjct: 170 SKGLD 169

[Close]
BLAST of Carg25933 vs. TrEMBL
Match: tr|A0A1S3C491|A0A1S3C491_CUCME (DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.4e-47
Identity = 96/113 (84.96%), Postives = 101/113 (89.38%), Query Frame = 0 

Query: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+A+EML RVLKERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGEL 114
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDI+RL QVLKLRILE   +G L
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSL 113

[Close]
BLAST of Carg25933 vs. TrEMBL
Match: tr|A0A1S3C3R7|A0A1S3C3R7_CUCME (DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.4e-47
Identity = 96/113 (84.96%), Postives = 101/113 (89.38%), Query Frame = 0 

Query: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+A+EML RVLKERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGEL 114
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDI+RL QVLKLRILE   +G L
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSL 113

[Close]
BLAST of Carg25933 vs. TrEMBL
Match: tr|A0A1S3C456|A0A1S3C456_CUCME (DNA repair protein XRCC2 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.4e-47
Identity = 96/113 (84.96%), Postives = 101/113 (89.38%), Query Frame = 0 

Query: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+A+EML RVLKERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGEL 114
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDI+RL QVLKLRILE   +G L
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSL 113

[Close]
BLAST of Carg25933 vs. TrEMBL
Match: tr|A0A0A0KMH0|A0A0A0KMH0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.7e-46
Identity = 94/113 (83.19%), Postives = 101/113 (89.38%), Query Frame = 0 

Query: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDE+A+EML RVLKERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGEL 114
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDI+RL QVLKLRI+E   +G L
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSL 113

[Close]
BLAST of Carg25933 vs. TrEMBL
Match: tr|A0A2P6R4M1|A0A2P6R4M1_ROSCH (Putative DNA repair protein XRCC2 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0446351 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.3e-40
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 0 

Query: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MA ++WIDGDETAAEML+RV  ER  LL+PPLHRVPL VGNVVEL GPS SAKTQILIQA
Sbjct: 1   MAAKRWIDGDETAAEMLSRVSSERPFLLLPPLHRVPLRVGNVVELAGPSSSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGS 111
           AVNCILP+EWNG+ YGGLE  V+FIDLDCR DI RL+++LK +I+E NGS
Sbjct: 61  AVNCILPREWNGVHYGGLERLVMFIDLDCRFDILRLSEMLKHKIMEPNGS 110

The following BLAST results are available for this feature:
BLAST of Carg25933 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023550059.11.5e-5689.76DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023550300.11.5e-5689.76DNA repair protein XRCC2 homolog isoform X3 [Cucurbita pepo subsp. pepo][more]
XP_022957215.12.2e-5588.98DNA repair protein XRCC2 homolog isoform X1 [Cucurbita moschata][more]
XP_022957217.12.2e-5588.98DNA repair protein XRCC2 homolog isoform X3 [Cucurbita moschata][more]
XP_022998340.12.2e-5588.19DNA repair protein XRCC2 homolog isoform X3 [Cucurbita maxima][more]
BLAST of Carg25933 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G64520.11.8e-3867.59homolog of X-ray repair cross complementing 2 (XRCC2)[more]
AT2G28560.11.7e-0426.61DNA repair (Rad51) family protein[more]
BLAST of Carg25933 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q682D3|XRCC2_ARATH3.2e-3767.59DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 S... [more]
sp|O43543|XRCC2_HUMAN2.8e-0934.62DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1[more]
sp|Q9CX47|XRCC2_MOUSE8.2e-0935.38DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1[more]
sp|Q9HJ68|RADA_THEAC3.6e-0441.67DNA repair and recombination protein RadA OS=Thermoplasma acidophilum (strain AT... [more]
sp|Q97BJ9|RADA_THEVO4.7e-0438.46DNA repair and recombination protein RadA OS=Thermoplasma volcanium (strain ATCC... [more]
BLAST of Carg25933 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C491|A0A1S3C491_CUCME7.4e-4784.96DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496... [more]
tr|A0A1S3C3R7|A0A1S3C3R7_CUCME7.4e-4784.96DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496... [more]
tr|A0A1S3C456|A0A1S3C456_CUCME7.4e-4784.96DNA repair protein XRCC2 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496... [more]
tr|A0A0A0KMH0|A0A0A0KMH0_CUCSA3.7e-4683.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4 SV=1[more]
tr|A0A2P6R4M1|A0A2P6R4M1_ROSCH2.3e-4075.45Putative DNA repair protein XRCC2 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g04... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0033063Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0005657replication fork
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000724double-strand break repair via homologous recombination
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR020588RecA_ATP-bd
IPR030547XRCC2
IPR013632DNA_recomb/repair_Rad51_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000724 double-strand break repair via homologous recombination
cellular_component GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component GO:0005657 replication fork
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25933-RACarg25933-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 38..99
e-value: 9.6E-6
score: 24.9
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 22..140
e-value: 7.7E-16
score: 60.4
NoneNo IPR availablePANTHERPTHR22942RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBERcoord: 2..104
IPR030547DNA repair protein XRCC2PANTHERPTHR22942:SF44DNA REPAIR PROTEIN XRCC2coord: 2..104
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 17..145
score: 16.535
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 37..103

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg25933Cla016886Watermelon (97103) v1carwmB0343
Carg25933ClCG11G001140Watermelon (Charleston Gray)carwcgB0344
Carg25933CSPI05G12570Wild cucumber (PI 183967)carcpiB0389
Carg25933Bhi07G000127Wax gourdcarwgoB0436
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg25933Cucurbita maxima (Rimu)carcmaB0495
Carg25933Cucurbita moschata (Rifu)carcmoB0478
Carg25933Cucurbita pepo (Zucchini)carcpeB0492
Carg25933Watermelon (97103) v2carwmbB0367