Cla016886 (gene) Watermelon (97103) v1

Overview
NameCla016886
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDNA repair protein XRCC2-like protein (AHRD V1 ***- F4KDQ6_ARATH)
LocationChr11 : 25748692 .. 25754591 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGCCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGTCCAATTATCAAGTTCAATCTCTCCATTTGAACTTCTTGCATGATTTATATCTGATATATCCATCACATATTGATGGTGATTTACCTCGAAAGCATGAGAACAATTTGTCTGCCATTATAAGTAGACCGATTCTGTCTTACCAAAAAAAAAGTAGACTGCTTCTGTGAGCAGGCTGCAGTTAATTGCATTCTTCCAAAGGAGTGGAATGGAATCCGCTATGGTGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGGTGAGCTATTTGTGCCATTTAATATTGATAAAATGTTACCTTCAAGATTATATCGACGAGCTGCAATTCTGCTCAATGATATCTCGTAATGTCTTGGGTTTTTTCTAGGATTTGTTGCGTCTTTGAATTATTTTTCTGTACGCGTGTCTTCTTCTGTTGTACATTTGATATAGAGCTAGTCTTGATGATGTCTATTTTGCTTGCCTGTGAAGAAAATAGCGCTCTCCAGTCTCCAGACTGAAGTTTTGACTGCAAATAGTCTCTTTATTGTAGAAATAATAGACAACCTTGGAATCATGTTCCTCTCCCCTCTCTCCTCCCTTCCCCCTACCCACCCACTCACCCACCGTGCCATAAACTGCAACCACGATACCTTTCCTTCATCTTTCGAACCTACACCGATGCTGTCCACCAAGTCTGCCGAACTAGAACAAAGCAATCTCAATAGAAAGGAAACTTTTTTGATTGAAGTAGACCCAACCTGACGAGGCACCCGCATTCAAATCTCAGAGTCTTCCAAAGACAAAGCTTCTTCCTTATAGATTCACTGGAGTACATTGGATGGATCACATATACTCTTACATTCGTTCTTATGCACCCTCGAAAGTTGAATCAGAAATTCTTCAAAGAAATAAGGGTAGATGATCAAATAGTTTGGATTGATAAATCTCCACAGAGAGTAGCCTTTTGGTTTCTTGCTAGCCCAACAGATGGACACTAGTGATATGATCGGGGTGTTCCTCCTTCACCAGCCCTTTTGTGAGAAGGGTCGGTTTTTATGGCTTATTAGGTTGTGTGCTATTTTACGAGTTCATTGGGGAAGCAGAATAACAAGGTGTTTAGAGGGTTGGAGAGGGATCCTAGTGATGTTTAGTTCCTTGTTAAATTTCTTGTTTCTCTCTAGGTTTCAATTTCAAAATCTTTTGTAATTATTCTATATGCACTATTTTGTATAACTGGAGCCCCTTCCTTTTAGTGGGGTATCCTTCTTTTGTGGCTTTTTTTTCTTCGTGCATTTTTTCTCAATGAAAGTTGTTTCAGTTAAGTTAAAAAAAAGTTAGACCATACACATTAAAATTCGATCTCTTTCCCACTAAGGAAAGAAAACTTTACCGATAAGGTATAGCCTCCTTTAATAAACTCCATTGCGTTAATTTTGGTATCATCCCACATAATCAACATCCCACTTGATCTACCAAAAAATTCCACAGTAATCCAACAAATACCATTTGAACTCCATAAAGATTTAATGAAACAAATATCAAAAGAACCTGTCCTTGTTTCTTGAATTAAAACATCTACAAGATTTTCTTCCCCAAGAATTCTGATATTCCATGAAATAATCTTCATAATATCAACAAATTACTTAGACTTTTCTGAACATTTTCCTTTTTATTATATCAATGAGAACTTGTTTCTTTATCTTATAAAAAAAAAAAAAAGCTATTGATTTGAAAAATAACGCAGTTAGAACTAAGGAACCTTGTGCTATGCTCTCAGCAAACTTTATACTTAAGGTTTATGTGCTAAAACTAGGGCTAAATTTTCTAGGATCCTCAAACACAGGAGATCGGGAAAATTTTGATGCACTATATGCTACATGCTTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGGTAAGATTCTTCTTATTTAAAAGAAAGAAAGCCTTCTGCATGCATTTCGTTCATACACTACCTTTTGTTTTTGTTTTTGTTTTTTTTTTTATTTTTATGAAAAACAAATTTCATTGATAAATGAAATAACAAAAGATGAATTAGATTGAAGTTTCAATGTGGAAGCCAAAAATGTTATAACTACTTGTAAAAATGTTAAACTAACAGGAACTCCATAGCTTATATTTTTAGGTTTAATGGTGATTTAAAATGGTATCAAAGTAGTAGGTCTTGTGTTTATACTATTTTAATTTAGCCTCTCCTCTTTAGGAGTCAGTTTTTTTGGTAAAAGTCTAAAAAAGGTGAAGTTCTTTATTGGCCATTCATAGAAGAATCCATACCTTGGGCTCTCGAGGAAGTTGCCATCATTGGGCTGTTTTCATTTTATTCTTTGTTGGAGGGTGGAAGAAGGTTTGGATAATTTATTTTTGAGCTGTAATTACATTCACTCGATTTGGAACTATTTTTTTTGGATTGTTCAACATCCAGTTAAGTACAAAGCTTTTAGTGATATGATCAAGGTGCTCCTCCTCCATTTTTCGTTTGGGGAAAGATAGTTTTTTATGGAAGGCCGGGGTCTATGTTTGTTGTGGAATATTTGGGGGAGAGAAATAATAGGATTTTTAGAGGGATTGAGCGGAATCTGGTTGATGTTTGGTCCCTTGTGAATTTTAATGCTTCTCTTTAGGCGTGGGTAACAAGATCCTTTTTTATTCACTAGGTCATATTTTGTTAGATTGGAGGCCCTTCCTCTAGGGTGCTCCCTTGTGGCCTTTGTTTTCTTGTATGCCCTTGTATCCTTCTCCTTCTCCTTCTCCTTCTTCTTCTTCATGTATGCCCTTGTATCCTTCTCCTTCTCCTTCTCCTTCTTCTTCTTCATTTTTCTTTTGCAATTATTCACTAGGTCATTTTTTGTTAGATTGGAGGCCCTTCCTCTAAGGTGCTCCCTTTTGTGGCCTTTGTCTTCTTGTATGCCCTTGTATTTTTTTCCCTCTCTCTCAATGAAAGTTGGTCTTTTTATAAAAAAAGAAAGGATATAATTACAATTACACAAAAAGGGGTAACAACAATGCAACATTCTTTATTGGTCTCTCTTCTCACTTCTTTTGCTACTTGAGCTTTACCCCTTTCTATTTAAATCTTTGGGAAGCCAAGATCTCAAAGAATGCTGGAAAACACCGAATTACATAGACTCAATTGATATGACTCTCAAAGTATAGGGGTATAAATTGAATTTTTCTCAAAAAGTTATTGAGATGCAGTATAACAGAATGTTAGAAAGCACTGAATTACAAAGATTCAACCTACCTCCATAATTGAAATCTCTTTGACTAGCCAATTTCTTCGTAATTTACTCCATGAGGGGCCACCAAAAGAGGCAGTTTTAGGGTGACCTCTTAGTGGTAGACCAAGATAAAGGAAAGTAAGGATTCAACCTTACATGAAGCCTGGAAGCTACAAGAGACGGCTTTGTATTTTCTTCATTTAACCCTCAAATGGTAGAGTTCTTCCAATTGATTTTAAAACCTGATCGGCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGATTTAAAAACCTGTGCGGCATTCCAAAAACCTGATGGCCGTTAAAAATTTCACTGTCTTTCTTATTAAACAATTCCAGTGTTTTGATCAAAATATCCAGCATTTTAAATCTCCTTTTTTTATCAGCCGCTGTACTTTTAGTTGGCTCTTCACAATTATGTGCAACCTGCAATCTATAAAATTTGTCTATATAATTCTTTAGAGCTTTTGGATTTCAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAGTTGGGTTACATCTACTTGTGATTGACAGGTTTGTGCTAAAAATAATTTGGAACCTTGTGATGTGTCTCCTGCTAGATAAAAATTTTAATTTCTCCTTAGTTTTTGATATATTTCATGAACTTGAAAAGATAAAGATGTATGCATTATTATATATATATATATTTTCTATCTTCCTCTTCCATGCCATATATGATGCCAAGGACTATAAATTGCTTTTGCTAGTAAGAATTGTATTCACTTTCATTGTTTTTAATTTGTTAATTATTATTATTAATTTTTTGGATAGGAAACAATTTCATTGATTAAATGAAATGATACAAAAGATATACCCATCCAAAGGGGTTACAAAAGATCCCCCCAGTTTGCAAGGGGAGTGTTTAAGCTGTAATTGCTAAAACGATTCATATTTGTACACCAGAAAAAGCATAAAAGATTGCTATATCCAAAATGTTCTGTGGTGTGCATTCACGATATTGAAAAATCCTCGAGTTTCTTTCACTATATATTCTCCCGAGGATAGCCTTGATCAAAAAGGTCATGGAGTAGCTTTTGTGGACGTGGTTGTACAGAAGCAAATGGAGGCAATCTTTTGGCAAGAGCCAGTGGGACAATGCTCCATCCAAAGGCAGAGAATATCTCATCCCAAACTTCTCTTGTGTAGGAGCAACGAATGAGAATATGACTGAGTGATTCCTCTGGTACCTAGCAAATACCACCAATTTGGGGAAAGAGATACCCAAGGACATTTTTTCTGTAGTCCGTCAAAAGTATTGAGGCAAGAGCGGCTGATTTCCCATAATCAAATCTTTGATTTTATTGGGGCAAGGGCTCTTTCCAATTCTTCACGTATATCTCTTTATCAATGTTTTGATTCCCAGATACAAGGTTGTTGAGTAATGATTTTATAGAAAAGTTCCCCCTCTGTCCTGACAGTCTGTGAATTGAATGGAGGAAATTTTATTGGTAAGCGCAGCCCATTCCTCAGTTTCTTTTTCCTTAATGAAAGTTCAATAGCCACTTAGTCAACAGGGATCCGTTTAATCAGTGATGCCCAAGCCACCTTCATTAATAGAGTTTTTGACTTTTTCCCATATTAAAGAGATGGTTAAAGAAACGGTTAAAGAAACATTTCATTGACGAATGAAATTAGGGGAGAACCTCAAACACCTAAAAGTGATTACAAAAGAGAACGCCAATTACATATAAGTTAAAATGAGAGAAAGGGTGCTTTGTTTTACACCATGAAAAAGCAATAGACAAAACAAACTCCATAAAACAATAAAAAATGGTTACTTTGCTTTGTTTTACACCATGAAAAAAAATTACTTTCAATTGTAAATATTAATGTTGAATCTGGGGATCATTACTTTTCTTCTTTCTGATTAGTATTGGAGCTTATCATTGGGTTGATCGTGGCTCTTCATCCTTGCCTCTGTGGGGTCACAACAGGTAATGCCTTTAAATTTTAAATTGTTTAATTCTATATAAATACTTATACACACTTATCAAATCAGAATACCCAACAAAATTTGGGAAAAGGACTATTAGTTGCTACCTATTTCATTTTCTGGTTAGACTTTTTTGGGCGTTTCCAATTTAATCTTCCATTAGCTTCTAATTGTGAGTTACTGCTAGAGTGGGTTTGTGAGAGAAAGTTTCCAGCTACTTTTTATCATGTGATTTTTATTATTATTGTTCTATTTTTAACTTTTTTTTTTTTTATTGTTATTATTATTATTTTTTCCTCCCATGGATTTCAGCTCCTGACATATTTCTCCATGGATTCTATACTAGCGTTCCATCTGTGGTTTTCTTGAGTTGA

mRNA sequence

ATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGCCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCAAAGGAGTGGAATGGAATCCGCTATGGTGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGCTCCTGACATATTTCTCCATGGATTCTATACTAGCGTTCCATCTGTGGTTTTCTTGAGTTGA

Coding sequence (CDS)

ATGGCGCTCAGTCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGCCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCAAAGGAGTGGAATGGAATCCGCTATGGTGGCTTGGAGTGCTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGCTCCTGACATATTTCTCCATGGATTCTATACTAGCGTTCCATCTGTGGTTTTCTTGAGTTGA

Protein sequence

MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNAPDIFLHGFYTSVPSVVFLS
Homology
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BLAST of Cla016886 vs. Swiss-Prot
Match: XRCC2_ARATH (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-35
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = 1 

Query: 6   WIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML+RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA 108
           LPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQA 110

[Close]
BLAST of Cla016886 vs. Swiss-Prot
Match: XRCC2_HUMAN (DNA repair protein XRCC2 OS=Homo sapiens GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-07
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 1 

Query: 11  ESALEMLARVLKERTSL--VVPPLHR---VPLRVGNVVELVGPSGSAKTQILIQAAVNCI 70
           ES  E+LAR L+ R+SL  + P L      P+  G+++E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLAR-LEGRSSLKEIEPNLFADEDSPVH-GDILEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA 108
           LPK       GGLE  V+FID D   D+ RL  +L+ R+ ++
Sbjct: 69  LPKS-----EGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQS 103

[Close]
BLAST of Cla016886 vs. Swiss-Prot
Match: XRCC2_MOUSE (DNA repair protein XRCC2 OS=Mus musculus GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-07
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = 1 

Query: 11  ESALEMLARVLKERTSLVV----------PPLHRVPLRVGNVVELVGPSGSAKTQILIQA 70
           ES  E+LAR L+ R+SL             P+H      G++ E  GP G+ KT++L   
Sbjct: 9   ESGTELLAR-LEGRSSLKELEPNLFADEDSPVH------GDIFEFHGPEGTGKTEMLYHL 68

Query: 71  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISNAPDIFL 117
              CILPK       GGL+  V+FID D   D+ RL  VL+ R+ ++   A  + L
Sbjct: 69  TARCILPKS-----EGGLQIEVLFIDTDYHFDMLRLVTVLEHRLSQSSEEAMKLCL 112

[Close]
BLAST of Cla016886 vs. TrEMBL
Match: A0A0A0KMH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.6e-47
Identity = 99/110 (90.00%), Postives = 101/110 (91.82%), Query Frame = 1 

Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISN 111
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDITRL QVLKLRI+EA SN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSN 110

[Close]
BLAST of Cla016886 vs. TrEMBL
Match: M5XPA7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014924mg PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.4e-37
Identity = 80/106 (75.47%), Postives = 88/106 (83.02%), Query Frame = 1 

Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MA   WIDGDESA +ML RV  ER  L++PPLHRVPLRVGNVVELVGPS SAKT ILIQA
Sbjct: 1   MAAKGWIDGDESAAKMLGRVATERPFLLLPPLHRVPLRVGNVVELVGPSASAKTHILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILE 107
           AVNCILPKEWNG+ YGGLE  V+FIDLDCR DI RLS++LK +I E
Sbjct: 61  AVNCILPKEWNGVHYGGLERLVMFIDLDCRFDILRLSEILKHQITE 106

[Close]
BLAST of Cla016886 vs. TrEMBL
Match: W9RLW6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024152 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-34
Identity = 76/107 (71.03%), Postives = 89/107 (83.18%), Query Frame = 1 

Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M   +WID DESA EMLARV  ER  L++PPLHR+PLRVGNVVELVGPS S+KT ILIQA
Sbjct: 1   MEAKRWIDVDESAAEMLARVSTERPFLLLPPLHRLPLRVGNVVELVGPSPSSKTLILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA 108
           A++CILPKEWNG  YGGLE  V+FIDLDCR DI+ LS++LK R++EA
Sbjct: 61  AISCILPKEWNGAHYGGLERPVMFIDLDCRFDISCLSKMLKQRMMEA 107

[Close]
BLAST of Cla016886 vs. TrEMBL
Match: A0A103Y2T3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_020260 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.7e-34
Identity = 74/104 (71.15%), Postives = 89/104 (85.58%), Query Frame = 1 

Query: 5   QWIDGDESALEMLARVLKERTSLVVP-PLHRVPLRVGNVVELVGPSGSAKTQILIQAAVN 64
           +WI+GDESA +ML RVLKER  L++P PLHR+PL V N+VE+VGPS SAKT+IL+Q AV+
Sbjct: 4   RWINGDESAKQMLGRVLKERPLLLLPHPLHRIPLVVSNIVEIVGPSPSAKTEILLQVAVS 63

Query: 65  CILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEA 108
           CILPK WNG++YGGLE SV+F+DLDCRLDI RLS  LKLRI EA
Sbjct: 64  CILPKSWNGVQYGGLEHSVLFLDLDCRLDIFRLSHCLKLRITEA 107

[Close]
BLAST of Cla016886 vs. TrEMBL
Match: M0RTF8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.0e-33
Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 1 

Query: 6   WIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDESA  MLARVL ER+ L++PPLHR+PLRVGNVVE+ GPS SAK+Q+L+QAAV+CI
Sbjct: 10  WIHGDESAKAMLARVLTERSFLLLPPLHRLPLRVGNVVEIAGPSPSAKSQVLLQAAVHCI 69

Query: 66  LPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAI 109
           LP+EW G+R+GGLE  V++ DLDCR D+ RLSQ+LK RI E +
Sbjct: 70  LPREWRGLRFGGLERMVIYFDLDCRFDVLRLSQILKHRIKEVL 112

[Close]
BLAST of Cla016886 vs. NCBI nr
Match: gi|659113951|ref|XP_008456838.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X4 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-49
Identity = 103/110 (93.64%), Postives = 103/110 (93.64%), Query Frame = 1 

Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISN 111
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISN 110

[Close]
BLAST of Cla016886 vs. NCBI nr
Match: gi|659113949|ref|XP_008456837.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-49
Identity = 103/110 (93.64%), Postives = 103/110 (93.64%), Query Frame = 1 

Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISN 111
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISN 110

[Close]
BLAST of Cla016886 vs. NCBI nr
Match: gi|659113947|ref|XP_008456836.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-49
Identity = 103/110 (93.64%), Postives = 103/110 (93.64%), Query Frame = 1 

Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISN 111
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISN 110

[Close]
BLAST of Cla016886 vs. NCBI nr
Match: gi|659113945|ref|XP_008456835.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-49
Identity = 103/110 (93.64%), Postives = 103/110 (93.64%), Query Frame = 1 

Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISN 111
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDITRL QVLKLRILEAISN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISN 110

[Close]
BLAST of Cla016886 vs. NCBI nr
Match: gi|778701939|ref|XP_011655114.1| (PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 99/110 (90.00%), Postives = 101/110 (91.82%), Query Frame = 1 

Query: 1   MALSQWIDGDESALEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLSQVLKLRILEAISN 111
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDITRL QVLKLRI+EA SN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSN 110

The following BLAST results are available for this feature:
BLAST of Cla016886 vs. Swiss-Prot
Match NameE-valueIdentityDescription
XRCC2_ARATH2.0e-3569.61DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2[more]
XRCC2_HUMAN1.8e-0739.22DNA repair protein XRCC2 OS=Homo sapiens GN=XRCC2 PE=1 SV=1[more]
XRCC2_MOUSE4.0e-0735.34DNA repair protein XRCC2 OS=Mus musculus GN=Xrcc2 PE=2 SV=1[more]
BLAST of Cla016886 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMH0_CUCSA1.6e-4790.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289900 PE=4 SV=1[more]
M5XPA7_PRUPE4.4e-3775.47Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014924mg PE=4 S... [more]
W9RLW6_9ROSA2.0e-3471.03Uncharacterized protein OS=Morus notabilis GN=L484_024152 PE=4 SV=1[more]
A0A103Y2T3_CYNCS7.7e-3471.15Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_020260 PE=4 ... [more]
M0RTF8_MUSAM1.0e-3367.96Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
BLAST of Cla016886 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113951|ref|XP_008456838.1|2.5e-4993.64PREDICTED: DNA repair protein XRCC2 homolog isoform X4 [Cucumis melo][more]
gi|659113949|ref|XP_008456837.1|2.5e-4993.64PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo][more]
gi|659113947|ref|XP_008456836.1|2.5e-4993.64PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo][more]
gi|659113945|ref|XP_008456835.1|2.5e-4993.64PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo][more]
gi|778701939|ref|XP_011655114.1|2.3e-4790.00PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
GO:0008094DNA-dependent ATPase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0006281 DNA repair
cellular_component GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component GO:0005657 replication fork
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016886Cla016886.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51, C-terminalPFAMPF08423Rad51coord: 38..99
score: 8.
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROFILEPS50162RECA_2coord: 17..130
score: 14
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 37..103
score: 3.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 37..103
score: 6.1
NoneNo IPR availablePANTHERPTHR22942RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBERcoord: 1..107
score: 1.5
NoneNo IPR availablePANTHERPTHR22942:SF36DNA REPAIR PROTEIN XRCC2 HOMOLOGcoord: 1..107
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla016886Cla97C11G207550Watermelon (97103) v2wmwmbB361
Cla016886MELO3C020032Melon (DHL92) v3.5.1mewmB079
Cla016886ClCG11G001140Watermelon (Charleston Gray)wcgwmB107
Cla016886CSPI05G12570Wild cucumber (PI 183967)cpiwmB445
Cla016886Cucsa.373370Cucumber (Gy14) v1cgywmB674
Cla016886CmaCh04G018730Cucurbita maxima (Rimu)cmawmB732
Cla016886CmoCh04G019720Cucurbita moschata (Rifu)cmowmB727
Cla016886Lsi11G001270Bottle gourd (USVL1VR-Ls)lsiwmB116
Cla016886MELO3C020032.2Melon (DHL92) v3.6.1medwmB072
Cla016886Carg25933Silver-seed gourdcarwmB0343
Cla016886CsaV3_5G013190Cucumber (Chinese Long) v3cucwmB463
Cla016886Bhi07G000127Wax gourdwgowmB566
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla016886Silver-seed gourdcarwmB0170
Cla016886Cucumber (Chinese Long) v3cucwmB083
Cla016886Wax gourdwgowmB569
Cla016886Wax gourdwgowmB676
Cla016886Watermelon (97103) v1wmwmB094
Cla016886Cucumber (Gy14) v1cgywmB252
Cla016886Cucurbita maxima (Rimu)cmawmB135
Cla016886Cucurbita maxima (Rimu)cmawmB734
Cla016886Cucurbita maxima (Rimu)cmawmB743
Cla016886Cucurbita moschata (Rifu)cmowmB119
Cla016886Cucurbita moschata (Rifu)cmowmB736
Cla016886Melon (DHL92) v3.5.1mewmB285
Cla016886Watermelon (Charleston Gray)wcgwmB247
Cla016886Cucumber (Chinese Long) v2cuwmB072
Cla016886Cucumber (Chinese Long) v2cuwmB434
Cla016886Cucurbita pepo (Zucchini)cpewmB460
Cla016886Cucurbita pepo (Zucchini)cpewmB455
Cla016886Cucurbita pepo (Zucchini)cpewmB468
Cla016886Cucumber (Gy14) v2cgybwmB410