CmoCh04G009700 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G009700
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMetallothionein-like protein
LocationCmo_Chr04 : 4933342 .. 4934564 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAGATCATAAGCCAAAAAAAGTTCCATAAGCTATCAGTTTTTCGTTCTCCTACAACTTCTCTAGCTTCTACACCATGTCAGGCAAGTGCGGCAACTGCGACTGCTCCGACAGCAGCAACTGCGTGTAAGTATTTTTTTTGTTTTCCTACGAACTTCGCAGCAAATCTCATCAAGAGCTTGCTTGTCTCAAAGCTATGATTCTGTTGCCCTCTCAGAAATTGTCTTAATATAGCAAGTCTGTCAATATGGTCCTTGGTTGCCCTCCCAATTATGACAGTTTGTTTGATGCTATAAAGGGAAGCAGAAGGGGCAATAAACTCTATTGGGGTGAAACTAAGAGTTCGAATCCAAATTATAGTGTCGCTGCAAATAAGATAATTATAAAACCACTTTTTCTTTCTTTTCCTTCACAGTATGACCAAATCAAAACTAAAAAATTACTAGTAAAAAAAAGGATTGAAAAGTTTGCATATTCGAATTCATTTCTATGTTAATGACGTGCTCTATAATGACAGGAAAAAAGGGAACAGCTATGGCGCTGTCATCATGGAGAATGAGAAGAGGTAATTTTTTCAGCTCATCGGGCATATACCTTCTTCAAAACAGATTATTTAGAGCCCATTTTTTTCATGAAAAACTCAAATTCAAAGGGTGTAAACAAAAGTATGTTTAGATTTAGAAAAAAAAGAGTGGAGCAGAGACAAAAGAAATCTCAACAAGTTATTAACTAAAAGTGCTTGATAGTACCTGGCATCTAACAATGAATCTCTTGGTTCTGCAGCTACTTTGACGCCATAGACATGGACGTCCCAGCGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGTTGCAAGGACTGCCACTGCGGCAAATGAACACATACACCTGTTGTTTCCATTAACACAGTTATATAAAGCCAGGAATAATGTAGCTGTGTTTGAAATGTGTCCTATTATGTTCAAAACCTCTGTGCTTAGCTAGAGGTGTGTTACGAATAATATCTACTTCTGTTCTTCATCCATAGTCATGTAATGCTGGTCACTTCTGTGGCCATGGGTTAACTATTAATGGATAAGTTATATACTAGTACACTCTCCCTCTCCTTCCATTTTTATTGTGGTTCTTTTCATCCTTGATTCAATTTGACTACAAATTACAAAGAGGAAACAATCTAGAAGTGCTTCAATACTTCTAAGAGTAGTGTAATACAACAAA

mRNA sequence

TAGAGATCATAAGCCAAAAAAAGTTCCATAAGCTATCAGTTTTTCGTTCTCCTACAACTTCTCTAGCTTCTACACCATGTCAGGCAAGTGCGGCAACTGCGACTGCTCCGACAGCAGCAACTGCGTGAAAAAAGGGAACAGCTATGGCGCTGTCATCATGGAGAATGAGAAGAGCTACTTTGACGCCATAGACATGGACGTCCCAGCGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGTTGCAAGGACTGCCACTGCGGCAAATGAACACATACACCTGTTGTTTCCATTAACACAGTTATATAAAGCCAGGAATAATGTAGCTGTGTTTGAAATGTGTCCTATTATGTTCAAAACCTCTGTGCTTAGCTAGAGGTGTGTTACGAATAATATCTACTTCTGTTCTTCATCCATAGTCATGTAATGCTGGTCACTTCTGTGGCCATGGGTTAACTATTAATGGATAAGTTATATACTAGTACACTCTCCCTCTCCTTCCATTTTTATTGTGGTTCTTTTCATCCTTGATTCAATTTGACTACAAATTACAAAGAGGAAACAATCTAGAAGTGCTTCAATACTTCTAAGAGTAGTGTAATACAACAAA

Coding sequence (CDS)

ATGTCAGGCAAGTGCGGCAACTGCGACTGCTCCGACAGCAGCAACTGCGTGAAAAAAGGGAACAGCTATGGCGCTGTCATCATGGAGAATGAGAAGAGCTACTTTGACGCCATAGACATGGACGTCCCAGCGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGTTGCAAGGACTGCCACTGCGGCAAATGA
BLAST of CmoCh04G009700 vs. Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.9e-16
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MSGKC NCDC+DS+ CVKKGNSY  VI+E E    D + +D PAAEH+ KC C   CSC 
Sbjct: 1  MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFVDAPAAEHDGKCKCGTGCSCV 60

Query: 61 DCHCG 65
           C CG
Sbjct: 61 SCTCG 65

BLAST of CmoCh04G009700 vs. Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 1

Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCN-PCSCKDCHC 64
          CGNCDC D S CVKKGNSYG  I+E EKSY D + +   AAEH+ KC C   C+C DC C
Sbjct: 4  CGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAEAAEHDGKCKCGAACACTDCKC 63

BLAST of CmoCh04G009700 vs. Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS KCGNCDC+D S CVKKG SYG VI+E EKS+F+    +V A E N  C C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE----EVAAGEENGGCKCGTSCSCT 60

Query: 61 DCHCGK 66
          DC CGK
Sbjct: 61 DCKCGK 62

BLAST of CmoCh04G009700 vs. Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS KCGNCDC+D S CVKKG SYG VI+E EKS+F+    +V A E N  C C   CSC 
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE----EVAAGEENGGCKCGTSCSCT 60

Query: 61 DCHCGK 66
          DC CGK
Sbjct: 61 DCKCGK 62

BLAST of CmoCh04G009700 vs. Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-14
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS  CGNCDC+D + CVKKG+SY A I+E EKS    + MD PAAE++ KC C P CSC 
Sbjct: 1  MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMTVV-MDAPAAENDGKCKCGPSCSCT 60

Query: 61 DCHCG 65
          +C CG
Sbjct: 61 NCTCG 64

BLAST of CmoCh04G009700 vs. TrEMBL
Match: E5GBS4_CUCME (Metallothionein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.4e-21
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 1

Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 64
          CGNCDCSD + CVKKGNSYGAVIMENE S FDAI M+ PAAEHNDKCSCNPCSC +C C
Sbjct: 4  CGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNCGC 62

BLAST of CmoCh04G009700 vs. TrEMBL
Match: D2J0B0_CUCSA (Metallothionein-like protein type 3 OS=Cucumis sativus GN=MTP-3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-20
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 1

Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 64
          CGNCDCSD + CVK+G+SYGAVI ENE S FDAI MD PAAEHNDKCSCNPCSC DC C
Sbjct: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGC 62

BLAST of CmoCh04G009700 vs. TrEMBL
Match: A0A0F3GH62_PSEPS (Uncharacterized protein (Fragment) OS=Pseudomonas pseudoalcaligenes GN=N619_00020 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-15
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS  CGNCDC+D S CVKKG+SYG  I+E  KSY + I MD PAAEH+ KC C P CSC 
Sbjct: 22 MSSTCGNCDCADKSQCVKKGSSYGIDIVETGKSYVETIVMDAPAAEHDGKCKCGPSCSCT 81

Query: 61 DCHCGK 66
           C CG+
Sbjct: 82 SCTCGQ 87

BLAST of CmoCh04G009700 vs. TrEMBL
Match: O49126_FRIAG (Metallothionein type I OS=Fritillaria agrestis GN=MET PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-14
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS  CGNCDC+D + CVKK NS+G VIME EKSYFD + MDV  AEH+ KC C + CSC 
Sbjct: 1  MSSTCGNCDCADKNQCVKKSNSFGVVIMETEKSYFDGM-MDV--AEHDPKCKCGSSCSCT 60

Query: 61 DCHCGK 66
          DC+CGK
Sbjct: 61 DCNCGK 63

BLAST of CmoCh04G009700 vs. TrEMBL
Match: B9TSW7_9LILI (Metallothionein-like protein OS=Lilium formosanum GN=MT1 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-14
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS  CGNCDC+D + CVKK NS+G VIME EKSYFD + MDV  AEH+ KC C + CSC 
Sbjct: 1  MSSTCGNCDCADKNQCVKKSNSFGVVIMETEKSYFDGM-MDV--AEHDPKCKCGSSCSCT 60

Query: 61 DCHCGK 66
          DC+CGK
Sbjct: 61 DCNCGK 63

BLAST of CmoCh04G009700 vs. TAIR10
Match: AT3G15353.1 (AT3G15353.1 metallothionein 3)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC---NPCS 60
          MS  CG+CDC+D + CVKKG SY   I+E ++SY +A+ MDV A E+N  C C   + CS
Sbjct: 1  MSSNCGSCDCADKTQCVKKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCS 60

Query: 61 CKDCHC 64
          C +C C
Sbjct: 61 CVNCTC 66

BLAST of CmoCh04G009700 vs. NCBI nr
Match: gi|307136066|gb|ADN33916.1| (metallothionein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 1

Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 64
          CGNCDCSD + CVKKGNSYGAVIMENE S FDAI M+ PAAEHNDKCSCNPCSC +C C
Sbjct: 4  CGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNCGC 62

BLAST of CmoCh04G009700 vs. NCBI nr
Match: gi|270300603|gb|ACZ69388.1| (metallothionein-like protein type 3 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-20
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 1

Query: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 64
          CGNCDCSD + CVK+G+SYGAVI ENE S FDAI MD PAAEHNDKCSCNPCSC DC C
Sbjct: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGC 62

BLAST of CmoCh04G009700 vs. NCBI nr
Match: gi|782990300|gb|KJU81265.1| (hypothetical protein N619_00020, partial [Pseudomonas pseudoalcaligenes])

HSP 1 Score: 88.2 bits (217), Expect = 5.8e-15
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS  CGNCDC+D S CVKKG+SYG  I+E  KSY + I MD PAAEH+ KC C P CSC 
Sbjct: 22 MSSTCGNCDCADKSQCVKKGSSYGIDIVETGKSYVETIVMDAPAAEHDGKCKCGPSCSCT 81

Query: 61 DCHCGK 66
           C CG+
Sbjct: 82 SCTCGQ 87

BLAST of CmoCh04G009700 vs. NCBI nr
Match: gi|2754853|gb|AAB95220.1| (metallothionein type I [Fritillaria agrestis])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSC-NPCSCK 60
          MS  CGNCDC+D + CVKK NS+G VIME EKSYFD + MDV  AEH+ KC C + CSC 
Sbjct: 1  MSSTCGNCDCADKNQCVKKSNSFGVVIMETEKSYFDGM-MDV--AEHDPKCKCGSSCSCT 60

Query: 61 DCHCGK 66
          DC+CGK
Sbjct: 61 DCNCGK 63

BLAST of CmoCh04G009700 vs. NCBI nr
Match: gi|734328192|gb|KHN05949.1| (Metallothionein-like protein type 3 [Glycine soja])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 1

Query: 1  MSGKCGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNP-CSCK 60
          MS  CGNCDC+D +NC K GNSYG VI+E EKSY + +DMDVPAAEH+ KC C   C+C 
Sbjct: 1  MSNTCGNCDCADKTNCTK-GNSYG-VIVETEKSYIETVDMDVPAAEHDGKCKCGTNCTCT 60

Query: 61 DCHCG 65
          DC CG
Sbjct: 61 DCTCG 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MT3_MALDO8.9e-1660.00Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1[more]
MT3_MUSAC1.3e-1460.66Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1[more]
MT3A_ORYSI1.3e-1460.61Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1[more]
MT3A_ORYSJ1.3e-1460.61Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=... [more]
MT3_CARPA4.9e-1458.46Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1[more]
Match NameE-valueIdentityDescription
E5GBS4_CUCME8.4e-2181.36Metallothionein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
D2J0B0_CUCSA3.2e-2079.66Metallothionein-like protein type 3 OS=Cucumis sativus GN=MTP-3 PE=2 SV=1[more]
A0A0F3GH62_PSEPS4.0e-1562.12Uncharacterized protein (Fragment) OS=Pseudomonas pseudoalcaligenes GN=N619_0002... [more]
O49126_FRIAG1.2e-1465.15Metallothionein type I OS=Fritillaria agrestis GN=MET PE=2 SV=1[more]
B9TSW7_9LILI1.2e-1465.15Metallothionein-like protein OS=Lilium formosanum GN=MT1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT3G15353.12.8e-1250.00 metallothionein 3[more]
Match NameE-valueIdentityDescription
gi|307136066|gb|ADN33916.1|1.2e-2081.36metallothionein-like protein [Cucumis melo subsp. melo][more]
gi|270300603|gb|ACZ69388.1|4.6e-2079.66metallothionein-like protein type 3 [Cucumis sativus][more]
gi|782990300|gb|KJU81265.1|5.8e-1562.12hypothetical protein N619_00020, partial [Pseudomonas pseudoalcaligenes][more]
gi|2754853|gb|AAB95220.1|1.7e-1465.15metallothionein type I [Fritillaria agrestis][more]
gi|734328192|gb|KHN05949.1|1.7e-1464.62Metallothionein-like protein type 3 [Glycine soja][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0065008 regulation of biological quality
biological_process GO:0006950 response to stress
biological_process GO:0044763 single-organism cellular process
biological_process GO:0044765 single-organism transport
biological_process GO:0008150 biological_process
biological_process GO:0006878 cellular copper ion homeostasis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G009700.1CmoCh04G009700.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33357FAMILY NOT NAMEDcoord: 1..65
score: 4.9