ClCG10G006940 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G006940
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Metallothionein-like protein
Location	CG_Chr10 : 9929857 .. 9931206 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGACATTAAAGAAGGATAGAAAGCCAGACCTACATGATTCGGATTCTTTTGGACGGTTCGGAAGAGGCGTGTGCTTCTTTCCCAAGCTTATCATCTTCCATTGCCAATGGCCACAACCCTGCAGTATAAATACACAACCATACTTCAAGACTTGGAGATCATAAGTAAAAAAAGAACATTTACAAGCTATCTGTTTTCCCTTCTCCAGCAACTTTTCTAGCTTCTTAACAATGTCAAGCTGTGGCAACTGTGACTGCTCCGACAAGAGCCAGTGCGTGTAAGTAGTTTTTCCCTTTTTCCCTCCTACAAATTTTGCAGCAAATCTAACTAAGAGCTTACTTGTCACAAGACAATTATTCTGGTGTGGTTATCTGGAAGATATCCTTGCTCTATCAGGACCCTGCTGCAAGGTCCAAAGTTTTCTTAATATTGCAAGTTTGTTTAGCTATATCGAACATTTTCTTAGTTCAACAATTATAACCGCGAAGATTTGGATCTTTGAACATAAGAGATGGAAGTTGTGCATTAGTGTTGAGCTACGCTTGTATTGGCTGAATGGATGTCTTTTTTTATTCCTATGAAAGTTAATCTAGCCAAATTTTCCATTTTGATTGTGTTGTGGTGAAGAAGATAATCATAAAGGTCTATGATCAATGTTTTCCCTCGATATCAACCAAAACCTATATAAACTATTATTGGTATGTTTCAATCTTATCAAGGGACGGAAAAAGTCTGCATAATTAAATTCTTATAATAAGCAATGACATGCTCTATAATGACAGGAAAAAAGGAAGCAGCTACGGAGCTGTCATCATGGAGAATGAGAAGAGGTAATTGTTTCAGCTCATAGGCCATAGACCCTCAAATTCAAAGTACTGAATATGAGAAAGAATTAAGTAAATCGTAAACAAAAGCATGAGTAAATTTAGAGGAAAAAGTGCAAACAACAAAAACAATTCCCAACAAATTATTGACAAAAACTGTCTGGCATCTAACGATAAATCTCTTGGTTCTGCAGCTCATTTGACACCATAGTTATGGACGCTCCAGTGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGCTGTAAGAATTGCAACTGCGGCAATTGAACACATACATCTATAATTTCAACTAGCACAGCTATATGAAAGCGAGCAATAATGTAGCAGCTGTGTTTGAAAAAGTCTGTTTTATGTTCAAAACCTCTGTTCTGAGCTAGAGGTGTGTTATGAATAATGTCTACTTCTGTTCTTCATCCATAGTCATGTAATGTTGGTCACTCCTGTGGCCATGGGGTTAATGGATAAGTTATACTAGTATACTCTCTTCCTCTC

mRNA sequence

ATGAAGTTGACATTAAAGAAGGATAGAAAGCCAGACCTACATGATTCGGATTCTTTTGGACGGTTCGGAAGAGGCGTCAACTTTTCTAGCTTCTTAACAATGTCAAGCTGTGGCAACTGTGACTGCTCCGACAAGAGCCAGTGCGTGAAAAAAGGAAGCAGCTACGGAGCTGTCATCATGGAGAATGAGAAGAGCTCATTTGACACCATAGTTATGGACGCTCCAGTGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGCTGTAAGAATTGCAACTGCGGCAATTGAACACATACATCTATAATTTCAACTAGCACAGCTATATGAAAGCGAGCAATAATGTAGCAGCTGTGTTTGAAAAAGTCTGTTTTATGTTCAAAACCTCTGTTCTGAGCTAGAGGTGTGTTATGAATAATGTCTACTTCTGTTCTTCATCCATAGTCATGTAATGTTGGTCACTCCTGTGGCCATGGGGTTAATGGATAAGTTATACTAGTATACTCTCTTCCTCTC

Coding sequence (CDS)

ATGAAGTTGACATTAAAGAAGGATAGAAAGCCAGACCTACATGATTCGGATTCTTTTGGACGGTTCGGAAGAGGCGTCAACTTTTCTAGCTTCTTAACAATGTCAAGCTGTGGCAACTGTGACTGCTCCGACAAGAGCCAGTGCGTGAAAAAAGGAAGCAGCTACGGAGCTGTCATCATGGAGAATGAGAAGAGCTCATTTGACACCATAGTTATGGACGCTCCAGTGGCCGAGCACAATGACAAGTGCAGCTGCAACCCCTGCAGCTGTAAGAATTGCAACTGCGGCAATTGA

Protein sequence

MKLTLKKDRKPDLHDSDSFGRFGRGVNFSSFLTMSSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCNPCSCKNCNCGN

Homology

[Close]

BLAST of ClCG10G006940 vs. Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 1


Query: 36 SCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCNP-CSCKNCN 95
          +CGNCDC+DK+QCVKKGSSY A I+E EKS   T+VMDAP AE++ KC C P CSC NC 
Sbjct: 4  TCGNCDCADKTQCVKKGSSYTADIIETEKSIM-TVVMDAPAAENDGKCKCGPSCSCTNCT 63

Query: 96 CGN 98
          CG+
Sbjct: 64 CGH 65

[Close]

BLAST of ClCG10G006940 vs. Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-18
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 34 MSSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCN-PCSCKN 93
          MS+CGNCDC DKSQCVKKG+SYG  I+E EKS  D +++ A  AEH+ KC C   C+C +
Sbjct: 1  MSTCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAEAAEHDGKCKCGAACACTD 60

Query: 94 CNCGN 98
          C CGN
Sbjct: 61 CKCGN 65

[Close]

BLAST of ClCG10G006940 vs. Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.0e-17
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 37 CGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCNP-CSCKNCNC 96
          C NCDC+D +QCVKKG+SY  VI+E E  S DT+ +DAP AEH+ KC C   CSC +C C
Sbjct: 5  CDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFVDAPAAEHDGKCKCGTGCSCVSCTC 64

Query: 97 GN 98
          G+
Sbjct: 65 GH 66

[Close]

BLAST of ClCG10G006940 vs. Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-16
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 35 SSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCNP-CSCKNC 94
          S C NCDCSD SQC KKG S+  VI+E E  S DT++MDAP AE+   C C P C+C +C
Sbjct: 3  SKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVIMDAPAAENGGNCKCGPSCACVDC 62

Query: 95 NC 96
           C
Sbjct: 63 KC 64

[Close]

BLAST of ClCG10G006940 vs. Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-14
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 37 CGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCNP-CSCKNCNC 96
          CGNCDC+DKSQCVKKG+SYG VI++ EKS F+ +  +    E++ KC C   CSC  CNC
Sbjct: 5  CGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE-MAEEVGYEENDGKCKCTTGCSCAGCNC 64

[Close]

BLAST of ClCG10G006940 vs. TrEMBL
Match: E5GBS4_CUCME (Metallothionein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-26
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 34 MSSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCNPCSCKNC 93
          MSSCGNCDCSDK+QCVKKG+SYGAVIMENE SSFD IVM+ P AEHNDKCSCNPCSC NC
Sbjct: 1  MSSCGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNC 60

Query: 94 NCGN 98
           C N
Sbjct: 61 GCNN 64

[Close]

BLAST of ClCG10G006940 vs. TrEMBL
Match: D2J0B0_CUCSA (Metallothionein-like protein type 3 OS=Cucumis sativus GN=MTP-3 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 34 MSSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCNPCSCKNC 93
          MS+CGNCDCSDK+QCVK+GSSYGAVI ENE SSFD IVMD P AEHNDKCSCNPCSC +C
Sbjct: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60

Query: 94 NCGN 98
           C N
Sbjct: 61 GCNN 64

[Close]

BLAST of ClCG10G006940 vs. TrEMBL
Match: A0A0F3GH62_PSEPS (Uncharacterized protein (Fragment) OS=Pseudomonas pseudoalcaligenes GN=N619_00020 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-19
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 26 VNFSSFLTMSS-CGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCS 85
          +++   L MSS CGNCDC+DKSQCVKKGSSYG  I+E  KS  +TIVMDAP AEH+ KC 
Sbjct: 14 ISYFQILAMSSTCGNCDCADKSQCVKKGSSYGIDIVETGKSYVETIVMDAPAAEHDGKCK 73

Query: 86 CNP-CSCKNCNCG 97
          C P CSC +C CG
Sbjct: 74 CGPSCSCTSCTCG 86

[Close]

BLAST of ClCG10G006940 vs. TrEMBL
Match: B9T0E5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0507790 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.6e-18
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1


Query: 35 SSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCN-PCSCKNC 94
          S+CGNCDC+DKSQCVKKGSSY A ++E EKSS  TIVM+ P AEH+ KC C   C+C NC
Sbjct: 3  STCGNCDCADKSQCVKKGSSYTADVVETEKSSVSTIVMEVPAAEHDGKCKCGASCTCVNC 62

Query: 95 NCGN 98
           CG+
Sbjct: 63 TCGH 66

[Close]

BLAST of ClCG10G006940 vs. TrEMBL
Match: B9SIK2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0821630 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-17
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1


Query: 35 SSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCN-PCSCKNC 94
          S+CGNCDC+DKSQCVKKGSSY A I+E EKS   TI+MD P AEH+ KC C   C+C  C
Sbjct: 3  STCGNCDCADKSQCVKKGSSYTADIVETEKSFVSTIIMDVPAAEHDGKCKCGASCTCVTC 62

Query: 95 NCGN 98
           CG+
Sbjct: 63 TCGH 66

[Close]

BLAST of ClCG10G006940 vs. TAIR10
Match: AT3G15353.1 (AT3G15353.1 metallothionein 3)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-14
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1


Query: 35 SSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSC---NPCSCK 94
          S+CG+CDC+DK+QCVKKG+SY   I+E ++S  + ++MD    E+N  C C   + CSC 
Sbjct: 3  SNCGSCDCADKTQCVKKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCSCV 62

Query: 95 NCNC 96
          NC C
Sbjct: 63 NCTC 66

[Close]

BLAST of ClCG10G006940 vs. NCBI nr
Match: gi|307136066|gb|ADN33916.1| (metallothionein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-26
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 34 MSSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCNPCSCKNC 93
          MSSCGNCDCSDK+QCVKKG+SYGAVIMENE SSFD IVM+ P AEHNDKCSCNPCSC NC
Sbjct: 1  MSSCGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNC 60

Query: 94 NCGN 98
           C N
Sbjct: 61 GCNN 64

[Close]

BLAST of ClCG10G006940 vs. NCBI nr
Match: gi|270300603|gb|ACZ69388.1| (metallothionein-like protein type 3 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-25
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 34 MSSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCNPCSCKNC 93
          MS+CGNCDCSDK+QCVK+GSSYGAVI ENE SSFD IVMD P AEHNDKCSCNPCSC +C
Sbjct: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60

Query: 94 NCGN 98
           C N
Sbjct: 61 GCNN 64

[Close]

BLAST of ClCG10G006940 vs. NCBI nr
Match: gi|782990300|gb|KJU81265.1| (hypothetical protein N619_00020, partial [Pseudomonas pseudoalcaligenes])

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-19
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 26 VNFSSFLTMSS-CGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCS 85
          +++   L MSS CGNCDC+DKSQCVKKGSSYG  I+E  KS  +TIVMDAP AEH+ KC 
Sbjct: 14 ISYFQILAMSSTCGNCDCADKSQCVKKGSSYGIDIVETGKSYVETIVMDAPAAEHDGKCK 73

Query: 86 CNP-CSCKNCNCG 97
          C P CSC +C CG
Sbjct: 74 CGPSCSCTSCTCG 86

[Close]

BLAST of ClCG10G006940 vs. NCBI nr
Match: gi|255581827|ref|XP_002531714.1| (PREDICTED: metallothionein-like protein type 3 [Ricinus communis])

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1


Query: 35 SSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCN-PCSCKNC 94
          S+CGNCDC+DKSQCVKKGSSY A ++E EKSS  TIVM+ P AEH+ KC C   C+C NC
Sbjct: 3  STCGNCDCADKSQCVKKGSSYTADVVETEKSSVSTIVMEVPAAEHDGKCKCGASCTCVNC 62

Query: 95 NCGN 98
           CG+
Sbjct: 63 TCGH 66

[Close]

BLAST of ClCG10G006940 vs. NCBI nr
Match: gi|255569714|ref|XP_002525821.1| (PREDICTED: metallothionein-like protein type 3 [Ricinus communis])

HSP 1 Score: 94.7 bits (234), Expect = 9.2e-17
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1


Query: 35 SSCGNCDCSDKSQCVKKGSSYGAVIMENEKSSFDTIVMDAPVAEHNDKCSCN-PCSCKNC 94
          S+CGNCDC+DKSQCVKKGSSY A I+E EKS   TI+MD P AEH+ KC C   C+C  C
Sbjct: 3  STCGNCDCADKSQCVKKGSSYTADIVETEKSFVSTIIMDVPAAEHDGKCKCGASCTCVTC 62

Query: 95 NCGN 98
           CG+
Sbjct: 63 TCGH 66

The following BLAST results are available for this feature:

BLAST of ClCG10G006940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MT3_CARPA	1.3e-18	66.67	Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1	[more]
MT3_MUSAC	4.9e-18	60.00	Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1	[more]
MT3_MALDO	7.0e-17	58.06	Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1	[more]
MT3_PRUAV	4.6e-16	56.45	Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1	[more]
MT3B_ORYSJ	1.9e-14	57.38	Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=...	[more]

BLAST of ClCG10G006940 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBS4_CUCME	1.2e-26	84.38	Metallothionein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
D2J0B0_CUCSA	1.7e-25	81.25	Metallothionein-like protein type 3 OS=Cucumis sativus GN=MTP-3 PE=2 SV=1	[more]
A0A0F3GH62_PSEPS	3.1e-19	64.38	Uncharacterized protein (Fragment) OS=Pseudomonas pseudoalcaligenes GN=N619_0002...	[more]
B9T0E5_RICCO	7.6e-18	65.63	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0507790 PE=4 SV=1	[more]
B9SIK2_RICCO	6.4e-17	64.06	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0821630 PE=4 SV=1	[more]

BLAST of ClCG10G006940 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15353.1	4.5e-14	48.44	metallothionein 3	[more]

BLAST of ClCG10G006940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136066\|gb\|ADN33916.1\|	1.7e-26	84.38	metallothionein-like protein [Cucumis melo subsp. melo]	[more]
gi\|270300603\|gb\|ACZ69388.1\|	2.4e-25	81.25	metallothionein-like protein type 3 [Cucumis sativus]	[more]
gi\|782990300\|gb\|KJU81265.1\|	4.4e-19	64.38	hypothetical protein N619_00020, partial [Pseudomonas pseudoalcaligenes]	[more]
gi\|255581827\|ref\|XP_002531714.1\|	1.1e-17	65.63	PREDICTED: metallothionein-like protein type 3 [Ricinus communis]	[more]
gi\|255569714\|ref\|XP_002525821.1\|	9.2e-17	64.06	PREDICTED: metallothionein-like protein type 3 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0006878	cellular copper ion homeostasis
biological_process	GO:0008150	biological_process
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0042221	response to chemical
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044765	single-organism transport
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0006950	response to stress
biological_process	GO:0065008	regulation of biological quality
biological_process	GO:0006833	water transport
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0040007	growth
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009963	positive regulation of flavonoid biosynthetic process
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0009750	response to fructose
biological_process	GO:0009651	response to salt stress
biological_process	GO:0010015	root morphogenesis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005623	cell
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G006940.1	ClCG10G006940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33357	FAMILY NOT NAMED	coord: 18..96 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G006940	Csa3G105950	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G006940	MELO3C016513	Melon (DHL92) v3.5.1	mewcgB416
ClCG10G006940	CSPI03G06180	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G006940	Cucsa.074770	Cucumber (Gy14) v1	cgywcgB074
ClCG10G006940	CmaCh04G009030	Cucurbita maxima (Rimu)	cmawcgB614
ClCG10G006940	CmoCh04G009700	Cucurbita moschata (Rifu)	cmowcgB615
ClCG10G006940	Lsi05G007510	Bottle gourd (USVL1VR-Ls)	lsiwcgB319
ClCG10G006940	Cp4.1LG01g08450	Cucurbita pepo (Zucchini)	cpewcgB349
ClCG10G006940	CsGy3G006280	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G006940	MELO3C016513.2	Melon (DHL92) v3.6.1	medwcgB402
ClCG10G006940	Carg00021	Silver-seed gourd	carwcgB0641
ClCG10G006940	CsaV3_3G006310	Cucumber (Chinese Long) v3	cucwcgB194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G006940	Silver-seed gourd	carwcgB0459
ClCG10G006940	Watermelon (97103) v2	wcgwmbB038
ClCG10G006940	Wax gourd	wcgwgoB086
ClCG10G006940	Wax gourd	wcgwgoB100
ClCG10G006940	Cucurbita maxima (Rimu)	cmawcgB283
ClCG10G006940	Cucurbita moschata (Rifu)	cmowcgB278
ClCG10G006940	Watermelon (97103) v1	wcgwmB066
ClCG10G006940	Cucurbita pepo (Zucchini)	cpewcgB195
ClCG10G006940	Bottle gourd (USVL1VR-Ls)	lsiwcgB318