Cucsa.074770 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.074770
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Metallothionein-like protein
Location	scaffold00785 : 647223 .. 648307 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AaGAGACCATTAACAAGCTATCTGTTTCCCTTCTCTTGCAACTTTTTAGCTTCTTCACCATGTCGACATGTGGCAACTGCGACTGTTCCGACAAGACCCAATGCGTGTAAGTAGTTTTTACCTACAAATTTATCAGCAAATCTAACTAAGAGTTTACTTGTCACAAGACTGATTCTGGTATGGCTACCAAAGTTGTCTTAATATTAATATTGTTCTTGGTTGCGCTTTCGGGTTCAAGCTATATCAAACATGGCCATGAAGATTTGATTAAGAGATTAGTGTTTTTTTTtAGCAACGCTTGTGTTGGCTGAATGAGATGTTTCTCTTAATACCATGAAAGTATCCATTTTGATTGTGTTGTGGTGAAGAAGATCAATGTTTTTCCTCAAAATCAACCAAAACCTGTAGAACGTACTATTGGTTTTATGTTTTGTCAATTGAAGGAAAAATTTGCATAGTTAAATTCTTATAAGAAGTACTGACATGGTTTATAACGACAGGAAACAAGGGAGCAGCTATGGCGCTGTCATCACGGAGAATGAGAACAGGTAATTGTTTCAGCTGATTTTGAGCCCCTTTTCCCCCAATGAGATCTTAAAACTCCAAGGTATGGATATGAGAAAGAATCAAGTAAATCATAATCAAAAGCATGAGTGAATTGAGAAGAGAAAAAAGTGAAAACAGCAAAGGAAGAACTTCACAACAAATTATTGACAAAAAGAGTTTTACAAAGCACCTGCCATCTAATGATATATCTCTTGGTTCTGCAGCTCATTTGATGCCATAGTTATGGACTTCCCAGCGGCCGAGCACAACGACAAGTGCAGCTGCAACCCCTGCAGCTGTCCAGACTGTGGCTGCAACAATTGAACACATACATCTGTTATTTCAACTAGCACAGCTATGTGAACGCCAGTAATAATGTAGCTGTGTTTGAAAAAAAAAaTAGTGTCTGTTTTATGTTCAAAACCTCTGTTCTTAGCAAGAGGTATGTTATGAATAATGTTTATTTCTGTTCTTCACCCACAGTCATGTAATGTTGGTCACTTCTGTGTCCATGGAGTTAATGGATAAGTTATACTAGT

mRNA sequence

AAGAGACCATTAACAAGCTATCTGTTTCCCTTCTCTTGCAACTTTTTAGCTTCTTCACCATGTCGACATGTGGCAACTGCGACTGTTCCGACAAGACCCAATGCGTGAAACAAGGGAGCAGCTATGGCGCTGTCATCACGGAGAATGAGAACAGCTCATTTGATGCCATAGTTATGGACTTCCCAGCGGCCGAGCACAACGACAAGTGCAGCTGCAACCCCTGCAGCTGTCCAGACTGTGGCTGCAACAATTGAACACATACATCTGTTATTTCAACTAGCACAGCTATGTGAACGCCAGTAATAATGTAGCTGTGTTTGAAAAAAAAAATAGTGTCTGTTTTATGTTCAAAACCTCTGTTCTTAGCAAGAGGTATGTTATGAATAATGTTTATTTCTGTTCTTCACCCACAGTCATGTAATGTTGGTCACTTCTGTGTCCATGGAGTTAATGGATAAGTTATACTAGT

Coding sequence (CDS)

ATGTCGACATGTGGCAACTGCGACTGTTCCGACAAGACCCAATGCGTGAAACAAGGGAGCAGCTATGGCGCTGTCATCACGGAGAATGAGAACAGCTCATTTGATGCCATAGTTATGGACTTCCCAGCGGCCGAGCACAACGACAAGTGCAGCTGCAACCCCTGCAGCTGTCCAGACTGTGGCTGCAACAATTGA

Protein sequence

MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGCNN*

Homology

[Close]

BLAST of Cucsa.074770 vs. Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-16
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCN-PCSCPD 60
          MSTCGNCDC DK+QCVK+G+SYG  I E E S  D +++   AAEH+ KC C   C+C D
Sbjct: 1  MSTCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAEAAEHDGKCKCGAACACTD 60

Query: 61 CGCNN 65
          C C N
Sbjct: 61 CKCGN 65

[Close]

BLAST of Cucsa.074770 vs. Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.0e-16
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 1


Query: 3  TCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNP-CSCPDCG 62
          TCGNCDC+DKTQCVK+GSSY A I E E S    +VMD PAAE++ KC C P CSC +C 
Sbjct: 4  TCGNCDCADKTQCVKKGSSYTADIIETEKSIM-TVVMDAPAAENDGKCKCGPSCSCTNCT 63

Query: 63 CNN 65
          C +
Sbjct: 64 CGH 65

[Close]

BLAST of Cucsa.074770 vs. Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.9e-16
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1


Query: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNP-CSCPDCGC 63
          C NCDC+D TQCVK+G+SY  VI E EN S D + +D PAAEH+ KC C   CSC  C C
Sbjct: 5  CDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFVDAPAAEHDGKCKCGTGCSCVSCTC 64

Query: 64 NN 65
           +
Sbjct: 65 GH 66

[Close]

BLAST of Cucsa.074770 vs. Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-15
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNP-CSCPDC 61
          S C NCDCSD +QC K+G S+  VI E EN S D ++MD PAAE+   C C P C+C DC
Sbjct: 3  SKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVIMDAPAAENGGNCKCGPSCACVDC 62

Query: 62 GC 63
           C
Sbjct: 63 KC 64

[Close]

BLAST of Cucsa.074770 vs. Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.1e-13
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSC-NPCSCPDCGC 63
          CGNCDC+DK+QCVK+G+SYG VI E E S F+ +     A E N  C C   CSC DC C
Sbjct: 5  CGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEVA----AGEENGGCKCGTSCSCTDCKC 60

[Close]

BLAST of Cucsa.074770 vs. TrEMBL
Match: D2J0B0_CUCSA (Metallothionein-like protein type 3 OS=Cucumis sativus GN=MTP-3 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60
          MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC
Sbjct: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60

Query: 61 GCNN 65
          GCNN
Sbjct: 61 GCNN 64

[Close]

BLAST of Cucsa.074770 vs. TrEMBL
Match: E5GBS4_CUCME (Metallothionein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.4e-30
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60
          MS+CGNCDCSDKTQCVK+G+SYGAVI ENENSSFDAIVM+FPAAEHNDKCSCNPCSCP+C
Sbjct: 1  MSSCGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNC 60

Query: 61 GCNN 65
          GCNN
Sbjct: 61 GCNN 64

[Close]

BLAST of Cucsa.074770 vs. TrEMBL
Match: A0A0F3GH62_PSEPS (Uncharacterized protein (Fragment) OS=Pseudomonas pseudoalcaligenes GN=N619_00020 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.2e-16
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNP-CSCPDC 61
          STCGNCDC+DK+QCVK+GSSYG  I E   S  + IVMD PAAEH+ KC C P CSC  C
Sbjct: 24 STCGNCDCADKSQCVKKGSSYGIDIVETGKSYVETIVMDAPAAEHDGKCKCGPSCSCTSC 83

Query: 62 GC 63
           C
Sbjct: 84 TC 85

[Close]

BLAST of Cucsa.074770 vs. TrEMBL
Match: D6BQM9_JATCU (Metallothionein-like MT-3 OS=Jatropha curcas GN=JCGZ_20992 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-15
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHND-KCSCNP-CSCPD 61
          STCGNCDC+DK+QCVK+GSSY A I E E S    IVMD PA   ND KC C P C+C D
Sbjct: 3  STCGNCDCADKSQCVKKGSSYTADIVETEKSFVSTIVMDVPAGAENDGKCKCGPSCTCVD 62

Query: 62 CGCNN 65
          CGC +
Sbjct: 63 CGCGH 67

[Close]

BLAST of Cucsa.074770 vs. TrEMBL
Match: B9T0E5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0507790 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-15
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCN-PCSCPDC 61
          STCGNCDC+DK+QCVK+GSSY A + E E SS   IVM+ PAAEH+ KC C   C+C +C
Sbjct: 3  STCGNCDCADKSQCVKKGSSYTADVVETEKSSVSTIVMEVPAAEHDGKCKCGASCTCVNC 62

Query: 62 GCNN 65
           C +
Sbjct: 63 TCGH 66

[Close]

BLAST of Cucsa.074770 vs. TAIR10
Match: AT3G15353.1 (AT3G15353.1 metallothionein 3)

HSP 1 Score: 73.2 bits (178), Expect = 6.8e-14
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSC---NPCSCP 61
          S CG+CDC+DKTQCVK+G+SY   I E + S  +A++MD  A E+N  C C   + CSC 
Sbjct: 3  SNCGSCDCADKTQCVKKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCSCV 62

Query: 62 DCGC 63
          +C C
Sbjct: 63 NCTC 66

[Close]

BLAST of Cucsa.074770 vs. NCBI nr
Match: gi|270300603|gb|ACZ69388.1| (metallothionein-like protein type 3 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 4.7e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60
          MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC
Sbjct: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60

Query: 61 GCNN 65
          GCNN
Sbjct: 61 GCNN 64

[Close]

BLAST of Cucsa.074770 vs. NCBI nr
Match: gi|307136066|gb|ADN33916.1| (metallothionein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 137.9 bits (346), Expect = 6.4e-30
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60
          MS+CGNCDCSDKTQCVK+G+SYGAVI ENENSSFDAIVM+FPAAEHNDKCSCNPCSCP+C
Sbjct: 1  MSSCGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNC 60

Query: 61 GCNN 65
          GCNN
Sbjct: 61 GCNN 64

[Close]

BLAST of Cucsa.074770 vs. NCBI nr
Match: gi|782990300|gb|KJU81265.1| (hypothetical protein N619_00020, partial [Pseudomonas pseudoalcaligenes])

HSP 1 Score: 90.9 bits (224), Expect = 8.9e-16
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNP-CSCPDC 61
          STCGNCDC+DK+QCVK+GSSYG  I E   S  + IVMD PAAEH+ KC C P CSC  C
Sbjct: 24 STCGNCDCADKSQCVKKGSSYGIDIVETGKSYVETIVMDAPAAEHDGKCKCGPSCSCTSC 83

Query: 62 GC 63
           C
Sbjct: 84 TC 85

[Close]

BLAST of Cucsa.074770 vs. NCBI nr
Match: gi|802716316|ref|XP_012084959.1| (PREDICTED: metallothionein-like protein type 3 [Jatropha curcas])

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-15
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHND-KCSCNP-CSCPD 61
          STCGNCDC+DK+QCVK+GSSY A I E E S    IVMD PA   ND KC C P C+C D
Sbjct: 3  STCGNCDCADKSQCVKKGSSYTADIVETEKSFVSTIVMDVPAGAENDGKCKCGPSCTCVD 62

Query: 62 CGCNN 65
          CGC +
Sbjct: 63 CGCGH 67

[Close]

BLAST of Cucsa.074770 vs. NCBI nr
Match: gi|255581827|ref|XP_002531714.1| (PREDICTED: metallothionein-like protein type 3 [Ricinus communis])

HSP 1 Score: 88.6 bits (218), Expect = 4.4e-15
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCN-PCSCPDC 61
          STCGNCDC+DK+QCVK+GSSY A + E E SS   IVM+ PAAEH+ KC C   C+C +C
Sbjct: 3  STCGNCDCADKSQCVKKGSSYTADVVETEKSSVSTIVMEVPAAEHDGKCKCGASCTCVNC 62

Query: 62 GCNN 65
           C +
Sbjct: 63 TCGH 66

The following BLAST results are available for this feature:

BLAST of Cucsa.074770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MT3_MUSAC	1.4e-16	56.92	Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1	[more]
MT3_CARPA	4.0e-16	61.90	Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1	[more]
MT3_MALDO	8.9e-16	56.45	Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1	[more]
MT3_PRUAV	2.0e-15	54.84	Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1	[more]
MT3A_ORYSI	7.1e-13	55.00	Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1	[more]

BLAST of Cucsa.074770 vs. TrEMBL


Match Name	E-value	Identity	Description
D2J0B0_CUCSA	3.3e-33	100.00	Metallothionein-like protein type 3 OS=Cucumis sativus GN=MTP-3 PE=2 SV=1	[more]
E5GBS4_CUCME	4.4e-30	90.63	Metallothionein-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0F3GH62_PSEPS	6.2e-16	64.52	Uncharacterized protein (Fragment) OS=Pseudomonas pseudoalcaligenes GN=N619_0002...	[more]
D6BQM9_JATCU	1.8e-15	63.08	Metallothionein-like MT-3 OS=Jatropha curcas GN=JCGZ_20992 PE=2 SV=1	[more]
B9T0E5_RICCO	3.1e-15	59.38	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0507790 PE=4 SV=1	[more]

BLAST of Cucsa.074770 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15353.1	6.8e-14	50.00	metallothionein 3	[more]

BLAST of Cucsa.074770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|270300603\|gb\|ACZ69388.1\|	4.7e-33	100.00	metallothionein-like protein type 3 [Cucumis sativus]	[more]
gi\|307136066\|gb\|ADN33916.1\|	6.4e-30	90.63	metallothionein-like protein [Cucumis melo subsp. melo]	[more]
gi\|782990300\|gb\|KJU81265.1\|	8.9e-16	64.52	hypothetical protein N619_00020, partial [Pseudomonas pseudoalcaligenes]	[more]
gi\|802716316\|ref\|XP_012084959.1\|	2.6e-15	63.08	PREDICTED: metallothionein-like protein type 3 [Jatropha curcas]	[more]
gi\|255581827\|ref\|XP_002531714.1\|	4.4e-15	59.38	PREDICTED: metallothionein-like protein type 3 [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0065008	regulation of biological quality
biological_process	GO:0006950	response to stress
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044765	single-organism transport
biological_process	GO:0006878	cellular copper ion homeostasis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.074770.1	Cucsa.074770.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.074770	Csa3G105950	Cucumber (Chinese Long) v2	cgycuB071
Cucsa.074770	MELO3C016513	Melon (DHL92) v3.5.1	cgymeB076
Cucsa.074770	ClCG10G006940	Watermelon (Charleston Gray)	cgywcgB074
Cucsa.074770	CSPI03G06180	Wild cucumber (PI 183967)	cgycpiB072
Cucsa.074770	CmaCh04G009030	Cucurbita maxima (Rimu)	cgycmaB0122
Cucsa.074770	CmoCh04G009700	Cucurbita moschata (Rifu)	cgycmoB0118
Cucsa.074770	Lsi05G007510	Bottle gourd (USVL1VR-Ls)	cgylsiB075
Cucsa.074770	Cp4.1LG01g08450	Cucurbita pepo (Zucchini)	cgycpeB0119
Cucsa.074770	MELO3C016513.2	Melon (DHL92) v3.6.1	cgymedB075
Cucsa.074770	CsaV3_3G006310	Cucumber (Chinese Long) v3	cgycucB074
Cucsa.074770	Carg00021	Silver-seed gourd	carcgyB0740

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.074770	Watermelon (97103) v2	cgywmbB070
Cucsa.074770	Wax gourd	cgywgoB081
Cucsa.074770	Cucurbita maxima (Rimu)	cgycmaB0121
Cucsa.074770	Cucurbita moschata (Rifu)	cgycmoB0117
Cucsa.074770	Watermelon (97103) v1	cgywmB077
Cucsa.074770	Cucurbita pepo (Zucchini)	cgycpeB0118
Cucsa.074770	Bottle gourd (USVL1VR-Ls)	cgylsiB074
Cucsa.074770	Silver-seed gourd	carcgyB0545